Map Locations of contig_42127 (7090 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_42127

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57821 2 1736 bp AK368556 Available Available None





CDS Structure of MLOC_57821






Contig Sequence (7090 bp)

>contig_42127 7090 assembly3_WGSMorex_rbca.fasta
CTTTGGAAATGAGATTGCTTAGTCTCTGTGGCTCACAGATTACAACAACACCAGTTGCAG
GTACGGGTAAAGAATTAATTTGACGTGAGCGCGCTGATTGTGCTACTTGGAGTTTCTTCT
TCTTCTTCTTCATACATATAGGATAGGTTCTAGGCCGGCAACCTGGGATAGCANNNNNNN
NNNNNNNNNNNNNNTCGTTTGTTTCCGTCCGTAGTCGAACCCTGCTCTTCTTCATGATGA
TCATATGTATTCTACTGATGTGATTCTGATGTAGCTTGTGGCAACTGTAAGCCAACTCTT
TATATTCATCTTTTCAGTACATGTACTAATTGTAACGATGTCCATTCTTATGAAATGACG
AGATGCGTTTCTATCTCTGTTGAGGCCCTCGCACTAAAATAAGGATAGGACAACATCTTG
GGCATTACAAACATCCTTCTTCTTCATCTACATCACAGATTACATAAATGAAGTAGAAAT
TAATGGCAGTGGCAATGTGAATCATACTATCATAGGCAATGGAACCAGTGGAAATTAAAT
AAATAGATGGCAAAAAAACCTTGATGGATTGGCTGATGGCTGGAGCGGTGGTGAACTGGT
GATGCAGCCGCGGTGGTGCCGTGGTGGACTGGAGCAGGGCTGCAGGGGAGCGGCCGTCGG
CCGGCCGGCAGGCCAGCGGCAACAACAGTGATGGGCAGCAGGCAGCAGCCTGCAGCCAGC
AGAGGAGCAGTCGGCCGGGGGTCATCGCCTCGCCATCGTTGGGTCGCCGGAGGGGTGGGA
AGGAGAGCCGGATTGGAGGAGAGGGAGAGGGTTGGCCGGATTGGAGGAAAGGGAGAGGGC
CGGCGGCGCGCGGGTTGGGGTTGGGACTTGGGAGCAGGCCAGCAGGGGAGGGAACGAGGG
GAGGGGAGGGGAGGGGAGCAGCGAGCAGGGCTGCAGGAAAGGGATCGAGGGGAGGGGATC
TCGGGAAACACAAAGTAGGTTGATTAGATTAGGATGCCTATTAAAAAATTAGCCCAAATC
TTGGGTATTACAGGGAAGTCCCAGGAATACCCCTCGCGTCGCTAGTGGTTGTCGATGAAA
ATGCATTGATGATCGATGATGGTTATGGAGGTGATAAAGTTGTGACGCCGAGAACATCGA
GACCATTGTTAGTTGAAGCAAGGTGGAGACTGAAAGTGCGTTATATCGACTAGAGGGGGT
GATTGGGCGATTTTAATAAATTCGTCATTGAATACTAAGTGAAGAAATTCACGATGATGA
AATGCTACACAGTGGATAAAGTACTCAAGTGCATGCAAAACAAAATAACGGCGAAGTCAT
CGTGATGAAACGGGGCATACACAAGGAATGAGTAGCAAGTAATCATGATAAGGAGGGAAA
CAAAATGATTCAAGAATTAAGATTGATAAAATTGGAAAGTCTTCACTCAAAGTTTTCATA
GATTCATGAACCAATTTCATTAACATATGAATGAGTCACCGTTGGAAACGGGCTTATAAG
TGAACCCTAATTAGTGACGGACGGAGTGGGCTACACGCCACAACTATTTTAGAAAATTAG
CAATAGCAATTCTCAAAAACCACTCGCCACGGCTAGAGGCTTAAGTGTGGCGGGCACAAT
TCGTAAAACCGCCACAGATATATTCTCTCATATGGGATTTATTTGAGTAAGCCAACAGTG
ACGAGCCTGACCTAGAGCCAGCCATAGGTAGATGGATGAGCAGTGGCGGGCCCTGATGGG
CAACCACCACTAGTTTTCCTTCCTCGATGCTCAATTTTGGCAAAATATAGCTGCGGCGGG
TTCTACTTAGCGATCGCTAGTGCTAATTTAACAGGTAGTGACGCGTTTATGTGGGTGTGT
CATAGAATATTTTCGTGCGCGGATTTGTTCTCGACGACACTTAGCAGTGGTGGGCTCTAT
GCGGCGCCCGAGAGTAATAAGATTGCGTGTCCGGAGTTCCGGACTCCCCCCCTCTCCCCA
CCACACACACACGTTTGATTTCGGTTTGCGGGAGAAAACACGTATAAACTGCTCGACGTA
TTTATATAGTCCCACATTTAGTGACTTTTATGATTCAAATAGAACGGTCCTCACGGATGC
GTGCGATTTGCGGGCCGTTATTGAAGATGCCCTAACTTCACTCTTTGTATAAATACATAA
AGCATTCGTGAAAAAAATGACTTTTTAGAGCTCATGAACCGTGTCCGTGTTGTCAAGTCC
ATCCCACCCTTAGAACATCTCTAACAGGCGTTCAAAAACCGCTCTGCGCGTTAAAAGATT
CGATTTTTGGGCACCGGACAGCTTCAACAGACGCTGCAAAATAATGTGTGTGCTAAAAAT
TTTTGGGCACGCGCTTAAAAACATTATCGCGCGCAGCATATTTGGTGCGTCGACTTGTAC
GCGCAGCAAACTCTAAGCTGATGTAGGTGGGACCGCTAGATCGAGCTGGATTGAGCGCCG
CAATAGCGCGCGTCTGTTAGAGATGCTCCGATCCTCATGCTTTAAAAATGCTACAGTGAT
GCACTAAAAAAATTATTGAATATGAATTTTTTAAGCTGCGGTTGGAGATGCTCTTATTAG
GAACATATTTGACCCTTCTCCGGTTCCGACCCTATTTAGCGTGTTCGACGACCAGTTACA
AGTTTCAGTTCCAACCAATTGCCCAACTTGCATGCGCGCAAATCAGCTTCGAACCAAAAA
CAAACAAAGCTCTACATGTGGATGTGGTGACTATACAAAGCTGCCACGCAGCGCAGGGCG
TCCGTCTTCGTGGACCGCAAACAACTTCTTCCCTTGACTGCTCTGATCCCTCTCCCAGTG
CCATGGCAGGGGACGCCGACGCTCGCTTCCTCCTCGTCGTATGCTTCGTCGCCTCAATCC
TCTTGCCGTCGCGGGCGCAGCCGGCCACGCCGACGGAGGTCAAGGTGGGGTTCATCATCG
ACGCCGGCTCGCCGGTCGGCAAGATCGCCACGACCACCATCCCCATGGCCCTCGAGGACT
TCTACGCCGCCTACCCCAATTCCTCCGCTCGGGTGCGGGTCCTGCAGCACGACTCCGGCG
GAGACGTCGTCGCGGCTGCGTCCGCCGGTAAGGACGACAGCGCTTCTGATGCTCTCCACG
CGCGCACCGGAGCGTTCTGCACAATCGTTGTTTTGACGTCGCGTGTTCTTGCCTTGCTGC
GTGCGTGCGTGCAGCGTTGCAGCTGATGACGGCCCAGGGAGCGCGCGCCATCCTCGGCCC
GCAGTCGTCCGTCGAGTCGGCCTTCGTCGCCGACCTCGCCACCCAGGCGGAGCTCCCCGT
CGTGTCCTTCTCCGCTACTAGCCCGTCGGTGTCGCCTGCCACGGCGAGGTTCTTCGCCCG
CGCCGCGCTGAGCGACGCGTTGCAGGCCGACGCCATCGCCGCGCTCGCCACGTACTTCGG
GTGGCGCCGCGTCGTGCCCATCTACCAGGACGACGACTACGGCGCCGCTTTCGTGCCCTT
CCTCGTCGACGCCCTCACCGCCGCGCGCGCCGAGGTCCCCTACCGCTGCGCGCTTCCGGA
GGACGCGACCCCCGACGCCATCGCCGCGGAGCTGTACCGCATGGAGTCCGAGCAGACGCG
CGTCTTTGTGCTGCACACGCGCGCCGAGGTCGCCAGGAGCGTGTTCGCCGCCGCCGCGGA
GGCCGGCATGACGGGCGCCGGCTACGCGTGGATCATCACCGACGGGCTCACGGGGCTCAT
CGGCTTCGTCGACCCGCCGCAGGGCGTCATCGGGCTCGCGCCCTACGTGCCGACAACGCC
GCGGCTGCGCGATGTCAAGAAGCGGTGGGCGCACCGGTACATGAGCGACCACCGGGAAGC
TGACCATGCGCAAGCCGTGATGGGCTGCTACGCTCTGTGGGCGTACGACGCCGCGTGGGC
CGTCGCGTCCGCGGCAGAGCGACTCAGCCCCAGCGACTTATCATCGCCGCCGGGGCTGGC
AGGCGGCAAGGGCGGCCCCACCGACATCTCCGGGCTCGGCAAGTCAAGATCGGGCGACAA
GCTCCTCCGAGCCATCAGCGACGCGACATTCGAGGGCCTCGGCGGCGGGTTCGAGCTCAT
CGGCGGCGAGCTCGCGGTGCCGGCCTTCCGCGTGGTAAGCATCGTGCACGATGGAACGGG
GAGGGGCATCGGGTTCTGGACGCCGAAGTACGGGCTGAGCCGACATGTCGATTGCGGTTC
CAGCAAAGCGGATGGCGAGCTCTCGCCGTTCATCTGGCCGGGAGAGTCGACCGTCCGGCC
AAGAGGGTGGGTGCAGCCGACGAGCGCCGCGAAGCTACGGGTGGCGGTGCCGGGGATGAT
CCCGCCCGGCTACCGGGCGATCTTGTACCTTGACGTGGACCCGGAGACGAACCGGACGAC
GGCCGGCGGGTTTGTGATCGAGGCGTTCGAGGCGGCGGTGCGGCTGCTTCCGTACGCTCT
GCCGTTCGAGTACGTGAAGGCGGACCGCATGCCCTACGACCAGTTGGCCGAGGCAGTTAA
CAACGGGGTAAGTCCTTTTTTCTTTTATTTAACTTTGCCTAGTATTTATTCAAAGTCTAA
GTTTTTTTTAGAGAAACCATATATTTATTCATAAAAATAGCAACATACAGCATATATCGT
TTTTCTCTGAAATAGTCCGAAAAAACAGCATACAAGAAAATTTACATCACCATCGTCAAA
GAATCTAGCCGCCGTCAACACTGAAGCGTTCGTCGAAGGAGAGAAACATAGGCCTCCAAC
TTACCAAGATCCAAGATAGTGTCATAACATCCAAGCTGCGTTATGAACCTCTAAACAAAC
GTTGTCACAAGTGGCAACGCACATGCTGATGTGGATCGTCGGCCGAAGAAATACTTTACA
CAACTTGGATCGTGGTATTAAAGGTCTCGACTGATGGAACCGTCGAAAAACTTCAAAACC
GGCAACCATCTTCCACCGCCAATCTTGGTGTGGACTATCCCTTGGACAAGACCGGCATTG
CAACGCCGGCCAACTCCAAGACACAAACTTCTGGCTCCACGGCGATGTTGGAAACGCAGC
CGACGTAACGCGGACGAAGCCAAAGAAACAAGAACCTAAGCAAGATCTACAACAACATCT
TGAGGAACTCGCTCAAACACAAATCCATGGCTCCTCGACGTCGCAGAAGAACTCGTCTAG
TCGGTGGCCTGAAAAACTTTATTCGCGGTGATGACGTCGGCACCGACCAAGCGCAAACAC
CCGACATACCTATCCTAAACCTATCTACAGACCAGACGGAAGGAACCGGGCTCCCCCACC
CTCCCGCTGCCATCGGAGCGACGAGCGAAGGGAAGGCGAGCCCACGCCCTCGTCGACGAG
AAGGCAGGAATTGTCCGCGCGATCGCCTCTCCTGGTAGTTAGAGAAGACGAGTGTGCGGC
AACGACTGTACTCAAAGTACGAGTTAACACACTCTAAAGAAGCATGGAGCCTAACTTTTA
CAAAAAAGACTTAGAACAAACTTTCTTATATTCTATTAGAGCATCTTAACCACCTCATCC
GCAGATTGACCAAAATTAACACCACTACATCAGGACATCTCATACTAGATTTTTATATCC
ATAAAAACATGCAAAATAAAAAATCTACATACTAGGTAGCTACTCCTTGTCGAGGATGTC
GACTATCTATGTCCCCTTCGACGGATACATGCACGACAGCTGCAGCTCCGCCCGCTCTCG
TGCCTCTGACTGCCCCGCTTCGGCCTCCTTCTCCTCCTACATATACGCCTCGACTTTGAT
GAAGAGCACGCCGGCCTCCGCCTACTTATGTCGGAGGAGCTTCTGGTTGGCCTTCACTTC
GGCCTCATCCTGGATGGACTCCAGGATGGCCTACTGCTCCACCATATCCTCGGCTTGGGC
GAGGCGAACTCCGTCTCCGTCATGTTGAACCCCCAAAGCAGGTTGCTCTGCCTCCTCCTT
CTCCAGATCCGCCACATCCATCGGCTCCGGCAGTTGCTCTCCCTTCTCCTCCTTCGGCTC
CTCCTCCTCCTCCTTCGACTTCGATGAGTTCGGAGGCAGCCCTGCAGCGACGCGGGTGGT
GCGCCTAGCCTGGATCTCCGCCTTGATCTGCATCCGACGCTTCAATGTGAGCATCAATTA
GATGGTGATCTTATGTCAGACCTTGTCGACGTCGGAGAGCGTGAGAGAGTGGAGGAGAGG
AGGCGGACGGGCTCGAGTGGTGGCGCGGAGAGGAAGGAGGTGGATGTGTTAGGGCTGGAG
GACGTCGGTGGGCTTAAATAGTCGAATTTGGTCTTGGGCAGCAAGCCGAAACGGCGTCAC
ACGGTGTTCATACCGCGGCGACGGACAAGGCGTACGTTGAACCGTCGGCTTTCCGCACGA
GTCCGTGTGGGACTACATCATCAGGCCCGCGTGGTGGACATGTCCGGCTGGGCGTCCCCA
TATTCGCCCCATATTTAAGCACGATATGAGGGGTGTGCCCGTCAGCCCGGACATTTAAGG
CCCGTTTGAGACGTCAGGCTGGGTTAAAATTTCGTGACAATTCAATGATCGGACGGCTTG
TGTGAGCGTATAAGGCGGGTTTGGGACGCCCATCTATAGATGTTTTTAGAGACTACATAC
AAATGTATATAGACATATTTTAAAGGGACCGTAACTTTTATAACCTGGATGTATATACAC
CCTATATGCAAAACAAAAATAACAATTCAATAAAAAAGTCCAAAAATTCTGAAAATATAT
TTGAAATAAACTTTTCACTGTACATGTGGAAAAAAATCCACAAAAATAAAAATACAAATT
GATGTTTTTTTTTCAAAAAAGACAATTTTTTTATCAAAATAGTGTGAATAGTGATTTATA
ATAGCAATAGATTTTGTCTTTTTTTGCCCAGTATCTAAAAGTTTATATACTAGTGCAAAC
CAAAGTCAAGTTTAATCTAAAAATACTTCGGAGCTATTTTGAATTTTTAATTAATTGTTA
AAAAAATTCCATAACGAAGATTCAAAGTGTATTTCTCTGTTTTAGAGTATATATTCATTC
GTTTTGCTCCGTATGTAATCTGTAATGAAATTTATTTCCTAACAAAAGTGGTTCCGCGGC
ACGCCACGTG