morexGenes - Barley RNA-seq Database

Contig contig_42113
Source Contig contig_42113
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42113 (7239 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_42113

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57806	4	2623 bp	MLOC_57806.2	Available	Available	LOC_Os07g05570.1, FRAME:+1, EVALUE:0.0, 13107.m00513 protein ERD4 protein, putative, expressed
CDS Structure of MLOC_57806

Contig Sequence (7239 bp)

>contig_42113 7239 assembly3_WGSMorex_rbca.fasta
GGGCGCCACACAAAAGGGTCAGGCGGGTGAAATATTTTCCCCGAGGGGTCACTCCGTGAG
TTCTTTCCCCCAGGGGTCATTTTTGTCAATTTTACCGAGGTGGGCGGCAATTTATTCTCT
GCTTTTTTAACGACAATGCGTGGGAGCGTGGGCTTGATTTTCTTGGCTTCACGTGCGGGC
GTGCGGGATCGAGCTATTTTTCTATCGCGTGCGATCAAGGGGGGTGACAGAGGAGGTCGA
ACCATCGCGGAGGTTGAACCATCACGACGGCATATCCTGCTTTAATAATAGAGAGAAATA
GTAGCAGTACCGGGATAATTTGTTAACAGGGTCAAAAGGCATCAAGCAGTCAGACTTTTG
AGATTTTTACACACCAGGGCAGCAGATGGTCTACACACAATAATAGCAAAAAGAAGAATC
TAAACACCCAACAATATCCACATCAACGACCTAAAATATAAGACGACGTCTTTCAATAAC
TGTTCAACATGCAACAGCGAATGTATGTACACGGGACATGACAATATGACATCAGTTTCC
TATACTGGAAACAGAAGCTTCACAGGGTGGAAAGGCCGTCCTGAGCACGTGGACATTCAT
CACATATCCTGCAGAAATTAGAAGGCAATGCCGGGGTCATCCTTTTGTTTACAATTCAGA
TTTTTTTACGGCAATACTTAGGTCATCCTTGTGCTTCTAATGGTTACTCGTTTTGATGGA
TGCAACTACTTACATTAAAAGGACGGAGCTCTGGAGGTGGTGCGTGACTGAGCGTCTTCG
AAGACTTCCACATCTTCGAGCTTCTCCGGCTTGAGGCAAGGAGGGATGTAGGCGGTGTAA
ATGGTGCTCATGTTCGGCGTCTCTTTCAGCTGCTGGCTTGCCACCTCAAGAGGGGTTTTG
GCGAATGCAGGATAGAAGCGTGTATGGCAAGTGTAGGCGAAGATTAAGCTTATTGCAAGG
AGTGGGAAGAGGATAGTAGAATAGTAGAAGCGCTTCGCGGTGATGATACCAATCATGGTG
GCCTGGTAAACCATTAGAGCTGCAATGATCCTCGTGTGCATGTGTGGCCACATTCGCCCG
TTGCTCTCATAACTAGGAACATAAACTCTCAAAACCTGCATTTAGAAACAAGGAGTGTAA
GGTAAGTCACTTCTGAAATCCGTTCTCTTCAAATATCTGGTGATGGTATTAGTATCAATT
TAAGAAGGCATGTCTATTTGCACAAGAAAAGGAAAAAAGGCTGTGCCTAGGCCAGCCCAA
CTGTTCAACATACATTTTAGTAAATACTCCCTCTGCCCCAAAATAACTGTCTCAACTTTG
TACTAGAGCTAGTACAATTGTACTAAGCTTAACACACTTATTTTGGGACGGAGGGAGTAA
AATCTTGCTCACCTGATTTTTTGCGATAAGCCAACCCAGAGCAAAGTAAGCAACGCCAAA
TGGCAAAATCAAAGGCGCGATGACGGAGTAGCACAACACAACTGTCACGATCAGCATATC
ATTTGGAACCCTGGTGTTATACCCCAGGTCTCCTGGAGCCCAGGCCGCTCTCACCTCATC
CTCTGTCTTGCATAGGTACTTCCTTTTCAGGTGGAAAATGATGAGAGGGACCAAACGAGA
GAGCTCAAGCCCATAACCAACAAAGAATCTGTCAAAAACAACAATCAATCAGTTATATAT
TCTACACCTGGAATAAGCGCAGGACAAGAAGTGCATAAATGAGACACGGTAATTACTTCA
GTGCAACGAATGTGAGGAAGAAAGTTGCATTTCCAGGAAGCCTGGCGCCAAGAGTCGTAA
AAATTCCAGGAGGGTTGTTGATAACATCTTGCAAAGCACTGAATAGTGAGGAACCAATTG
CATAGCCGATGAAGACATTGAAGACGATGAAGTAGAAGTATTTTCCTGATGCTGCCCTCA
CTAGATGGCTCTGTGAAGGAATTCCTTCTAACTTTGACAGGAGCATAAGAAGAGTGGGCA
GCAAAGCAAGGAAAACAATGAGGGCGATCTGCGGCAGGTAAGCTTGTAAGACTGTCGTAA
GTAAAGGTTGGTCCACAACCACCTTCAGAAAGGGCAGCTTCTCCCTCAGTTTTTGCAACG
TTGTAACAGCAGAGATAGCAGTAATAGGAATCATATAGAAAACCACGGTGACAAAGACAA
TGAGGTAGACCACAGTCTGTCTGGTTTGCCTATCATATATTTTCTTTGGAAGATTGGTCC
ATATTACCTCACGTGGTTCAGGAGCTTCTGTAACTGTCCATTCATCAAACATCTGGGCAT
GGAGAGTCTGAGATGCAGAGGCTGCAGCAGCTCTGCTGTTGAAGAAGACAAAGGCCGCCC
GTTGCTGTTTATCACTAAGGGTGCTCTTCTGTTCATCCTCCAGTTTGGGAAGCAATTCCT
TAATCTTCTCACTACAATACTCAAGCGTGTCAACCTTTTTACCGATAAGGCCAAGGAATC
CCGTCCTATGTGTAGGCCTCGTTCCCTCAGGTCTATTTGTTGTTTTTGACTCTGCATAGA
CAGCTTCAGCATGAGCAATTTTTTGTTTGTGACCTTCAATCTCTTGGAAAATTTTATCAG
CCTGCATAGGACGATTTTATCATGTACGGGGAAAATAAGACACATGCCACAAATAATAAA
CAAAGGGCGGAACTGCCCTAAAGAACCTCTGAGTTGCAGTACCTTCTTGATGTCTGTCAC
AACCATTGCTTTGTAGAATGTGTCAGGATGAAGTGCTCGAAAATACGAGTCCACCGAGTC
CTTTATAGTTTGATCAGGAGGTGGAACAGGAACATCTCTCACCAACATGGCAAACTCCTC
TGGTTTAACGTCTGATGTTGATCGCGCAGCTGCTCTCAGATTCGAAACATGCTTGTAGGA
TCTCCATAGTATGAAATAGGTGACAAAGGAGACCCAATAGACTGCAAATATAAATGCCCA
CAGCCTCGCACTTTCGTCCTGGAGAAAATATCAAGACACTACTGAGTTTGGTTGTGACAG
CGAGTGCCTGTGATTGCAATCTGGCAGTCCTCTTTATAGACTGTACGTTTCTATAGAGAA
GAACTCCAGCTACTGCAGTTCTCAATATTACCATTTTCAACCAAAGTTCACGTTATTATG
AATCCGCAGATAACAATTGTGCAACAGGTGATTACAGCAACAACTGTTAAACTGTATAAA
CACTGTAGAAACAAGGAATACTTATCCCGCAGCAGAATTTCAGTTCAGTCAAAACTTCAG
AAGTGATGGACCTAATGGCTCCTAATAGGACAGCAACGAGACAGATACTGATTCTGACAA
TACAAATATCTAATAATGTGCCAAATTATGCGTTTCATCTACATAACGATATGTACGGTA
CATTTTATGGAGCCAATCATCCACCTGGTTATGGGCAGATCAAGCATGAAAATGTCTCCA
GAAGTCTGAATAATTGGAATATTCTATAGACCTATTTGCGGCAACAAAGACAGGTCATCA
AGGTCAGATAAGAGGATTACTTACTTTAACATTGCCCAATGCTAATCTTTCAAAATCTGT
GACGTTGGGCGGCACTCTGCCAGTAGAATCCTCCAGGGCATGATCAGTTCCAGCAACTGG
TAACAGCACGGGAAGCAACACAATCGCGGAAAACACAAGGATTGCCAACACTGGAACACG
AGAGAACAAAAATTCTGATAAGATTTTTATATTCAAGCAAGCACTCTGAATGATATATCT
ACCTACCTATATCTGACCCAAAACGCATCCTAGCATTAACTCTTTGCACTACAGACTAAG
CAGTTTATAACATGCTAAATTTCATACTTCGAGCAACCCTCCATGCATGATAGTTTTATC
TCGCTTGGGCCCGGCCTTCGGGACGGGTGGTGATAACTCCTCTTAACAAAGCACACGCAT
GGCTCTTGCTTGTCCTACACCTTTTGCTTTGCAGTATTTTATATATAATATAAAGTAAAC
TGATAGCAACAATTAGGATTTGTTATTGCCATTCTGGCAGTTGACACAATCGGCCGTATC
TTCATGTTGGTACACATTTTTAGAAAATACTAGATGTTCGTATAGTACTGAGAATGGCGT
TATGGCACCCAGGAGCCATGGAGGCCGAAATTTTTGAAAAAAACAAAATTCGAAAATTTT
GATTTTAAAAAATCTGAAAACAATTGTACAACTAAACAGGTGTGTGATCCGCGTGTGTGT
AAAATTTCAGGCCAAAATACTTTGAGACGCGACCAGTACATAAAAGACAAATTCATGGTC
TCGAAAGATGAATAGTATGTGTTAAAAAGGTTCAGATTTATCTTTTTCGCATAGCCTTCA
TTTCAACGTATTTAGTTCTGAAGATTTATACATTTATGTATTGTACCTTCATCTACCTAT
GTATTTTTTTCAGAATATTTTGAAATGTTAAAATACGAATTTTCACGAAATTTAAACTTT
GAATTTAAAGGCCTCTATGGAGCTCGGTCTCAAAAAACAATTTCCGTGAATATAGCAGAT
TCATTAGGGAAAGCATACTCCGTAGCACAGTAGCACGACTTAATTTTATATTTTGTGCAC
GAAATATTATTTTTTGTGGAAGCGAAAAAAAATACGGAAACGCACAGACAAGTACTCAAC
CAAATCAATCTGGGAACCAAACAACCAACTCAACCAAAGGCATGGGCAAACAAACGAAGT
GGAGAGCGTGGTTGGCTTGGCCGTACCGGAGGAGAGGAAGACGAGGTAGACGGCGGCGTC
GAGTCCGCCGGCGGCGACGACGTCGGGCTCGGACGCCGCGAACGCTTGGCGGATCCAGCC
GACGGGGCTGCGCGTGCCCCGCCCGCGCCCCTCCCACGGGTCGAGCCCCCGCAGCAGCAC
GCTCGGGTAGTACACCGGCGCGTTCCCCGGGCGGCGCGAGAGCCACGTGAACAACAGCAC
CAGCACGACGAAGATGACGAAGGACGTGAGAAGCGACGTCAGGAACGACGAGATGTCCAT
CACGCCCGCCGCCGCAGCAGCCCCGCTCCTCCTCCGGGGGGATTATGATGGGGTTTGGTA
GTGGAGGGAGTGATTAGCGGAGGGCATTAGGGTAGTAAATGGGTGGGAAGGGTAAGCATT
GGATGCTTTGCTGTGCTGTGGAATGGCTGGCGTGGTGGGGAGTTTATGAGTTGTGGAGGT
TGCCGAACAAAGGAAAGGGGCAGGAGGGAGAAGAGGAAGGGGATGGGACCATGGAGATCA
GCAAAATGTCTGAAATGCCCCTTGCCTCCGTGTCTCTCTCTCTTCCACCTTCTCCTTTCC
AATTATTCGAATCCCTTCCTTTTTGCCCCCTTTCATGGATTCACCTTCCTCGCCTCCATG
ATGCGTGTGTAAAAACAATTTCAACACGTTGATTCAAACGAACGACGCTTTTGTTTGTAT
TTTGTTTGTTTGGATCGGTCTCACGAACATTCGTGTCCGTTTTTTGATTGAATCGATGTT
TGCGTTTAATGTGGTCAGCGATCATTTTTAGGCGACGCGAATCAAACATTTCAAAAAATA
TAAAAATCATTAATTAAACATAAATGTCAGCATGCGAGGACGGTGATAATCCACATCACA
ATAAACATAATTAAATAAACTAAAAACAAGGAGACGTGTTGCCTTAAGTGCCCTCCTCCT
CCTCGTCTTCGGGGTCGGTGAGGTCGATGAGCGTCGGCGCCGGGCCACCCCACGGAAGGT
CGTCTCCCACGCGGCGACGACATCGTCCGCCGGTGGTTGCACCGACGCTTGGTGGGCAGC
ATGTCACTCCTCCTCTCTGCTTCGGCCTCGCGATCCATGAGCTCAATCCGCCGGGCATGT
GCGCCTTCTTCCCAAACCCGCCGCTGTCGTCAGTGCTCCAGGTGGGCCACCTCCTGCTCC
GACGTCGCACCCAACCAAATCGGTGGCGCGCTGACCTACTCGCGCACCACCCCGTCCCAG
GCGTACACCTCCAGCCTGAGACGGGGGATGGCAAGGCCGGCGGCGAGGGACGGCGGGGCC
AACGGCGGCAGGACTATGTCGTTGGCAGCGGAGAGCGCAATGCCCTCTGCCAGCTGCTTC
TCGTAGGCCTCCTCCTCCTTCTTGAGGTGCGCCTCCTCCTCGCTCACACGCAGGACGGTC
GCCAACGCGTTTTGGTAAGCCGCCTCCGCCTCCTGGTCTTCTTCACGCACGATGAGGGGC
GGCGGCGGTCCAGCCACCACGTCACGGATGCCATGTCGGCGCTGCTCCTCGTGCTTCCAC
GCGAAACACGCATGCCAGTCGGGGAGTCTGCAGCGTAGACGGGTTGCGCTGCTGTTCTGG
TGTCAGCTGCTCCCGTCGGCGCCTCACCTCCTTCGCATGCGTCTGCACCGACCGCGGCAC
CGCTCGCACTGGGATCCTCTCCGGACCCAAGTGCGAGTCGTGCGGCAGCGTGATATTGGC
GTAGGCGAGAGGGACACGGTTCTCCCAGTGCCACCTCGGCTGATGCACTAGCACGTTGAC
CCGCTGGCGAGGCGAAAGGTAAGACTCCGGCGCGCGGACAAGGACGGCGGGGGACTTGCC
CTTGTATTTCATGGAGAAGAACCTCGTGATGGTGGTGGCTAGGGTTTGCCGCCGACGGGT
GAGCACAGGTGGCTAGATGGGGATGGGGCGACTTTAAAAACAGGATGACCCCCCCCGGCA
CGCTTGGATTAAAAAGGACGATTTTGGGTCGCTAATGCGTGGGCCTGCGGTAGGCGGTCG
TCGTTAATAAAGACGACGCCAACTTTGACCGGGTGCCATGTGTGGACGAGCGCGGACATG
AGAAGGCGCGCGCCGCATCCGCGCCGACGCATTTCAGCGTATTTTTGGGCCTGAAATGGG
TCCTCGCGGACGTGTTTTGACTTTAGGTCGACGCATTGGGCCTTCACTTTCGGCCGCGTT
GACCCAAACGGACGCGAGAGAACAATTTGGGCCGCTATGTTGGAGTTACTCTAACGGTCT
TATAATTGTCTTGTGTGGATCAATTTATGAAAAAGTATTCCCTAAAAAACAAAAACAAAT
ATATCATGCCGAGGATTTCTTTAGATTGATTGTCTATTGACCAAACCGGTAAGACTCATT
GATGAGGACATCAATACCATTGTTACACCCATAGCCCCTGCTGCTATACATACTAGACCA
GTTACTGGAGCACACGCACGTCAATTAAATTACCAGGTACTTTCGTTTCTTGGAAATCCT
TCTAATATTCATGAACATATGTGTTGGAAATATGCCCTA