morexGenes - Barley RNA-seq Database

Contig contig_42090
Source Contig contig_42090
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42090 (8451 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_42090

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57784	1	2821 bp	MLOC_57784.1	Available	Available	LOC_Os12g44390.1, FRAME:-2, EVALUE:0.0, 13112.m04698 protein RecF/RecN/SMC N terminal domain containing protein, expressed
CDS Structure of MLOC_57784

Contig Sequence (8451 bp)

>contig_42090 8451 assembly3_WGSMorex_rbca.fasta
CTCTGAACATCCCCCTTGTTCTTGAAGATTGGTACTAATGTACTCCGTCTCCATTCTTCT
GGCATCTTGTTTGCCCGAAAAATGAGGTTGAAAAGTTTGGTTAGCCATACTATCGTTGTG
TCCCCGAGGCCTGTCCACACCTCAATGGGGATACAATCAGGGCCCATCTAGACGGTCAAC
ACACAAGCGAAAATAGTGTACCACATGTGATCTAGTGATATTGTAAGCACTTCCAAATTG
TGTTTTGTGAACTAACCCATACTATGTGTTTTCCATTGTTTTTAAGGTGTCCTTCCTTAG
ACGCTTAGGCGATAAGGCGCCCTGGCAGCGCCTTTCAAATATGCCCGCCTTAGGCGCTTA
GGCGTCGCCTAAGTGCTAAGGCGGGTGGTGCTCGTCTTAGGTCGCCTTACCGCCTTATAA
ACAATGGTGTTTTCTATGTCTATATAGGTTTGGTGATTCTCATGGGCTTGCATCGAAAGA
AATATTTCAAGTAGCCCATGTGAGGATGACATCAAGGGAAGATGATCATCAGGGTAGTTA
AGGGCAAGTTCAAGATAGGTATCTCAAGGGACTACATGCTTGAAGCTTGCGGATGGATGA
TCAAGTGACGAACATATGAAGATGATCTACATGAAGAGGCTTCCCATAAGTTTATGAGGG
ATATATTCAAAAAACCTCACTAAACTTCGTAGAGACATTGATGAATAGACATATAGTTAA
AGCTTGAAGGTCCATTGAAGTGTGATGGGTACATGCGAAGATGATATACAAGAGAATGCT
TCACATATAGTTTATGGGGTAGCTATTTGTAGTCTTCACCAAGTGACCTTGATCAAGAAC
TTCATGTTACTCATCACACTCAACAATAGGAATGCGCCTTGATGATGTGCTCTGCTCGGC
AGCCATTTTCTTACAACATCAAAGACAGATGGAACGAGTTGGAGATGATACAGGTTGGGG
ATGGAACGAGTTGGAGAAGATACAGGTGCTATAAGATTTGTGTTGCCATTGCCATCTTCT
AGGCTGGGTCTAACTTGATGCAGAAAACGACCAGGCCTTTGAGGATATATTTTTTTCATA
TTTCTGATTGTTCTATTCTTCAGTTTCTAGTATTTGAAAATGCACAACTGAAACCATCAG
GCGTTCGTTCGGACTAGAAACTGTGGCGTGTGCAGGCTGCCATATTAACCGGCAAAACTT
GCGGACAGTGCGGGCTGCCGCATCAACCCAGCTCAACGCATCCCACCCCAATTGCATCCT
TATCAAGGACTACAGAAAAACAGACAACATGCTTCGGAAGTGTACCTTCAGCCTCAGCTT
TCAGCTCTTCCATCTGATTTGAAATATGTTCAGCGTCAGCCTTAGCATGAGTCTCTCTCT
CCTGCAAGCCCTTCAGCTCCTTCTCTAGGGTCTCATGTGTATTGTTTAACTTCGCAATCG
GAGCATGCATATCTCTCTTTTGTTCATATTCCAGCCTGCAGAACAAAATCATGCTCCGAA
CGCTATATGAGGTGCATGTATGCACGTGAAAGTAAATGTAGACCTAGCCAGTTGATTCAC
ATGAAAACAATAAATGAAGGATTACTTACTGGTATTTCAGTTTTGATAATTGATTGCTCA
GGCTTAGCTTCCTCTCCTGCAGTGCTTGAGCATCTTTCAGTTGCTTTTCTTCATATTCAC
GAATGTTCTTCACACCAACTGACGTGCTAAAATCCTTGTAAATCCTGTCTACTATCTCGT
TTATTTTTTTCTCCCGCTTTCTTACTTCCCGTTCGTTTTTAGCAAGACGGCTTTCCAACT
AAGAAAATTATATATTAGTGACTGGTGCACAAGTAACACTTGGAACCTGACTTAAACAAC
AGTTGAACACATTGATATATTACCTCCTCCTTTCCTGGCTCCAGATGATCAATTTCTTTC
TCAATATTACGTTTCTCAGATGCCAATTTATGTAGCTTCTCCTTGAGATTATTCTGCACA
CAATAATTAGTATTAGAAACAGCCAGGAAATAGCAATGGTCTAGTTGAGTTTAAAGTATG
GTCAAGGGTAGTAAAAACTATCCACCAAACCTGTTCAACATTCGAGTAATGTAATTTTTT
CTCGAGTCCAGTTATTTTCTCAGATACAGCAAGCTCCTTTCTCTGTAACTCCCGTGGGGA
ACCAAGTTCGGACATTTCAGACTCTAGCTTACTTTTCTTCTTCTTCAAAGCTACATCACA
CATTGCATAAAGGGTAAGGCAAATTACAAGATATTGCACATATCTATTGGTAATAATCGG
AAAAAAAAGGATACGTACATTCTATTCTGCTGTCGTCCCATTTATTTGATCTAGCTTCCA
TTCCACCGCTTACTCCACCAGTCATTGTGCCAGATTTAGTCAAAAGAATCCCATCAACAG
TAACAACTAAATGCATACATGCGAGAGCAAAGTAAGCATAACTTTTTTTTAGAAAATATC
ATTTCAGAATATGAGCGCATGTACTTACCCTTGTACCTTTCACCACTCCAACTTAGAGTT
TTAGCTTCATCAAGTTTGTCACACACAAGTGTATTCCCAACAGCATACAGAACTGCTTTC
TCCAAAGCTCGATCAAATGTATAATGTTAAGACACAAATGACAAGCAAAACCAAACAATT
TGGCACAAATGTTCGTTTTTCACATTTGACAATACAAATTCACTGAAATATAGCTCATCG
ATAACTGACACAAGAAGCAAAAGACTGCACCAAATAACTCTATCTAGCAAAACCACAAGT
AAGCAAGTGTGCAAACAAAATTAAATAATAATACTAGTCTAAAAATAAGTGAAAGGGCCT
TAGCAGTTTTCTGGTGGAAACAGCAATGAATTCTTTATAGAAAATGGATATCCACATGGG
GGCGGTCAAGGGAGATAAATGTCAACAGCTCTTCTCACTCCATGGAGTGATGCATTACAC
ATTTTTACAACAAGTATAAACTGCAAAAGCAATATTATTCAGTAAGGCAGATAAAATCAT
CTGGTAGATAAACATTTGATTTGATCACTCAACACTCGAAAGGATACAACAACAAAAAAA
AGGAGCATGCAGCAAACATCACCAAGATGCAGAAAAAGAAGGATATTGTATCACATCAAA
GATCAACTGTGCAGACCCTCCCAGGGTACGCAACCTCTCTGTTATTGGCTTCACACGGAT
CGATTGTAAGGGAATAAATGTCTGTGGAGGAAGACGTTGTTCCTTCAAATACTGCAGCAC
AGGAGACATAAAGTTACTGGCATTCGGGGAGATGATGCCAAAAGTAAAGGACAGAACATT
CTATAACGTGAAAACACAAATGCAAAACGTGGTTGATGAACCGTTGCTATTTGGTTGATA
TTTTTTGTTTTGCCAAAAAAACGGCCGCAAAGTGTGGTTTGCCACATCTTTTTGGTGTAC
GAATTGTTTGCCACAACTGTGTCAAAATAGTGAGTGTAAGAGAAGTGGGCAAGGTAGCTA
AGAAAGTGTTGTATTCCACAACAGTGGATATGGAACTACAGTAGCCTCATTTGGGTGAAG
TTTGCCAAAGGCAGGTCTTGCAATAAGAGTATCATGTGCTTTCCTCCTTAGGGTGATATC
CATCATGCTCCCACTCCTAGGGAAGTGGTGCAAATTGTCAGTTCAGATGGATGTTAGGTG
CAGTTCAAACACCAACCGTCCGTCCATGTGCCCACCTTCACATCCATTTGAAAAGTTGAA
ATCCATCCGTGTTCTTTTAACGCTTCACATGTATAGGAAGATTTCACAAATACAGAGATT
GGAACTAGATCTGTTTTTAGCAAACACACATCTCTTCCATAACCATGCAGGAATATATAA
GTGGCGCACTGGTTGTAATACGTTTTGAAATAAACAAAATAAGTAATAGCATTCACTAAC
ACGGACAGTATACTTTGTTTTCCGAATATATAACAAATGTAGGAAGACAAAACTAACTAA
AAATCATGAAACAGCACCTTAATGCATTCCTTTCCTGTGCTTTCATCTTCCACCACAACT
GCATCCATGAATTTTCCCATGGCAACGGTGACAGCAAGGTTGTATTTCTTTTGTGAAGGC
CGACAAAGTTCAGTCATTCGACCATGGACTCCAGGGAATAGCCTCTTAAGACTCTTAACA
GTTTCTGAAAATCGAGCATCCCGCTCACTTTCATGCTTCACAGCTTTGAGTTCACGTAAC
TGCGTATCTATCTCATCCACCTTCTGCTTCAACATCTGATACTTAGCTCTGCATAAAGTT
TGAGAAATAATGTATTGGACATCAAAATTCAAAACTAACATTTATGGTAGAGCAGAAGTT
AATACTCTGAGTGATTCGAACAAGCAACCCATCAAGATCAAAGGACTTTGGTATGAACTA
ACCCTGAAGATTGGCGTTCCTTTGCAATCTTATTATGATCCTCACGTAAGTTGGTAAGCT
CGTCTTCATGCTTGGGGATTGAATGAAGAATCTTACTAAGCTTTGTCTGCAATTCACTCT
CCTGTGATGATATCTCATCAACACGGCTACGCAGCTGCTGCATATTCTCCTCTAAATTCT
TTTTGGCTTCAATATCAGCATTTAGCTCTTTGTCTAATACTTCCTTCTCGTCTCGCAGCT
TTGCTGTCCTCATTCCTGCATCTTCCTTACTGTAACAGAAGTTAAGGTCCAGTGAAGCCT
TCATAGGGATGCACTCACAAATATCAAAAGAATGCAAAAACATTAATCAAAAAGTTTAAA
TTTATCCATTTCGTCGCAGTTATTCATAACTACTAAAAAACTCAAAAGCTCACAGATTTT
GCGAGTTAGTGAAGGTGATTGCAAAACTAAATCATACAGTATGGCCTCGTTGAGTCTAGT
ATCTACCTGCAGACTTGTCTTAAATAACACCCCCTCCCCCCTCTCCCCCCTCACAAATAG
ATGTTCTAGCATTCAAAGTTTGTTAGGAAATACATATCATTCTACGATTTTGAGACTCGC
ATCGCTCATTCAACTCCCAGGTATATTTTATGCCTAGAAACTAGAAAGATAAAGACGACA
CACAGTGGTGTTCCTCTCCTTAGATAGTACACATGAAGATACGACAGTCAAGACTCACAT
TCTATGATATTCCTGGACTTGGTCATCAGCTAATTGCAGTTTCACTCCTTTATCTTGGCC
TTGCTCGTTCAAATCCTCAATAGCACTTGTGACATCAGCCAAAGCACTCTGCAGCCTTTT
CATCTCTTCCAAATGTTTCTTGTTATCATCCTTCTTTTTGTCAATCTCTTTGTTGCAGCT
TTTGATTTTGGATTTGAGCCGAGATATTTGCTCTTTCAATCTAAGAAGCTCGGGTTGCTG
AGAAGAAACATATCAATTAGGATGTAATTAACATGCCCAATTCATAATTTCAATGACATT
GGTACGCTCTAAATCTCTAGAAGGCAAGCCTTGTTTCACCTAATAATAAGAATTCTAATA
CAATTCCTAAATTGCAAGAAGCTAAAATTAAACATGTAATTAAGACCAAATACAATGATG
AGCAACTAATAGATGAATGTGAGTCTTAAAAGCATACAAGACATTCATAAAAAAAAGAAA
TTATCAGCTAAAACCAGATACAGCTATCACTGTTAACTGTAAAAACGACAATTATAAACA
AGAAAAGAACGGAAGAAAAGAATTTGATAAGCTCCTCATACAGCCACAAACAGATATGTC
ATGATGGAAGATTTGTGGGGTTTAGGAGTGAAAATAAGGCACCTACCTTCTTGTCCATAT
CAATCTTTTTCTTGGCCATACTCTTCTCACATAAAGTAATCTTCTTGAGAAATGCACTTT
GCTCCTTCTTTTTTGCAGCAAGTCCATTGTCGGAGGATTGATTATCTTCCCGCGCTTGCT
GAAGAGAATGTCTTTCATCCTCAAGTTCAGCTTCTATTTTTTCCATGTCTTTTTCAATGC
TGTAGAGTTGCCACAGAAGATGTTCTGTTTTTAACAGTTTCTGAAAACAAGCAAAGACAT
AGGGCGCATAATGTGAATATTCCATAAAGTAACAACTTGAAATTTTTCAGAACAAAAGAA
AATAGTGCGGGAGAAGTACCAGGTCCTGCTGTAAGCGCAGATGCTTCTCTGCCTCTTCCT
TCTGCGCCTTCTTCTGCTTCCTCTCCATGACGATGGTCCTTTTTTCTTGATAGACAAGTG
CAGATTTCTCTTCGGCACTGGTTTTCTGTTCCTCCAATCCGTCGTACTCCCTCCTGAGCT
CGTCAGAGCCGGCAATCTGCTCCAGAAGTGCAGTGAGCTCCTTAGGATTCTTGGAGGCAA
TGGATTCCACGTCACCCTGCAGCGCAAATGCTCATGTCATGTCTCCGGAATTATTGCTAA
TCGAGGAGGAAGAATTAGTGAAGACCTGGAAAACGAGGAAGTTGCGGGCCTTGACGAGGA
TGCCGAGGGATCTAAGCTTGGCGTTGTAGTCGTCCCACGTGACCAGTCGGCCGTCGATAC
GGTACTCGCTGCCACCGGCGCCGGTAATGGTGCGGGTGAAGTGAAGCTCGCCGCCGGTGC
TTGGGAGGTTGTAGACGAGGCGTACGGAGGCCCTGCGACCCTTGGCCTCTTTGTCGCGGT
CGTCGAGGGCGTAGATGAGGTCCTTGAGCTGGGCACCACGGAGGTGTGCGGAGCGGACGC
CGAGCACAAAACTGATGGCATCCATGAGATTGGACTTGCCGGCGCCATTGGGACCGATGA
TGGCCGTGAAGTCGAAGAAGGGGCCGATGGTCTGCGTTCCCTTGTACGACTTAAAATTCT
CCACCTCCAACCGATGGATCCGCCCACCGCCGCCTCTGCTGTGTCCAACGGAGGCCGCCG
CGGCCGCCATGTCTTCCCCACCTGCTAGTTCCCCTTGCCCTTCCTAACTGAACTAGGGTT
TTCGTCGAAGGGAAATTCGTAGTGCACGGGGAAGGAGACTGATGCCTGTTGCAGCCATTC
AGGGCCGTTTTCTGCTCCCATTCAGGCCCACCGGCTCAATGGGCTACACAATATTCGGCA
GAAACATTCCCTTAAAAAAATGGGAAATACTTACCTTCAGCCGGCAGATTACACACGAGC
GATCTGCCGCCTCTGTACCACGTGTGTACGCGTACTTTACACCTATCTTTCCGCAACATC
ACGTCTGCTACAAATTTACCCTTTGCAATAACACCTATGTTGCAAAAAAAGAAAACAAAG
AAAAACTGCAAATATTTTTTTACAACCTTGTGTGTGTTTTTTCCGAAACAACGCCCATGT
TGCAAAAAAAATCGCAACTCAGTCTTCGTTGCAAAAAAAAATCGCAACACAACCTTTGTT
GCATAAAAATTATGTAACAAAACCTTTGTTACAAAAGTTTCTGCAACAAGGTATGTGCTG
CAAAATAGAAAAATGTGCACCCTGTTGAATCCGACGGCTTGCAAGGCGGCGGATCTTTTA
AAAAGATCCACCGACCGACGCGTAGCAGTCCCCTAAAAAAATGCTCCCATTTAGGCATGG
GGAAAAAATTCTCCACCCTCTCTAGGCTCTTCTAGTTCAGTTCACCAAGATCTCTCAAAT
ATTCTTCTCCATCTTTCGGATGGTGCTGATGAAGAAAGATATATGTTCATCTCTGGTTTT
GAGTTGGGGTCGTGGAGCTGGAGCAGTCCTAACAGCCTCTGCAGCTACTGCCTCTCCGGC
CTCTCTTGTTGTAGCTGAGTTCGGATGAATGTCATCCATCACAACTATATTATTTTCAAA
TTCTGTCTGAAGGGGCAAATGAGGACGATCAAGCTGATATGCATGCTTGCAAATCTTGGC
ATTGATGAGCATNTGAATGTATGGTGCATATCTGCATGATCTCTTTTGGTCTATAGAAGT
TCTCCTCACAGTCTCAGCAATCAAATCTATGACTTTGAAGTGAGTGTGGGTGTCTAGATG
ATGCATCATATTGATGGAATAACCTCTAATCATTTTGCCATCACCTGATTTAGGCATCAT
GGTATGTCTCAAGATTGTGTTGGTAGTGGTTATTCCTCCTTGCAAGAAATAGACAGACTC
AAGTTTGTGAGATGGCAGATAGTCATTGGGCACTCGCTTGTACATATTAGCCATCGAGTT
GTGATTCTTCTTAGGTTATGAATACACATCCAAGTCTTCATCACGTGCTTTTGGAGCACC
AATGATAGTAGCTCATTCTTCAATTGTGGCTTCATATCCATGACCATCACTCATCCACAC
AATTGTGCCATCTGCATAGAAATGAACCCTTGAATAGAATTGCATAATCATCTCATCATT
TCGCGCAGTCATCTCTTTGCCAACAAACTATTCAATGTCAACAAGATTGAAGTTTTCTCT
CACATGGGGAACGAAATCTTCATTGGCTTTGATGTATTCTCGGTCGACATATCTCATGTC
ACTCACTGTTGGACTCTTGTCAAAGAGAACTGTCTCATAGAAGTCTTGTTG