morexGenes - Barley RNA-seq Database

Contig contig_42086
Source Contig contig_42086
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42086 (6585 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_42086

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57776	1	1077 bp	MLOC_57776.1	Available	Available	LOC_Os03g08460.1, FRAME:+3, EVALUE:2e-28, 13103.m00973 protein AP2 domain containing protein, expressed
MLOC_57777	1	433 bp	MLOC_57777.1	Available	Available	None
CDS Structure of MLOC_57776

CDS Structure of MLOC_57777

Contig Sequence (6585 bp)

>contig_42086 6585 assembly3_WGSMorex_rbca.fasta
TTGATGTCAAAGGGTTGCATGCATGGATAAAATAGTTAGTGGGATGGTAGATTAATGAGC
TGACCGCACATGCATGGTTGGTTGATGTGGAAGCTCTGCATGCTTAGAAAAAATAGTTAG
TGGGTTACAGCTATTTAAGAATAGAAGATAAAGAAGAGACGAGACACTGGTATGATGATC
ACCTACAAACAGGGACAGTTCGATTCTATAATTATGCTATTGTTTACCCATTTGATATTA
GTGTTATAGGGGTAGCAAACCTAGGGTGCTGACAAGCAGGTTGAGGGCTGAAAAAGGAGC
TCACTGTTTCATTCTTCTCATCACCTTGTCTTTTTTGCGAGTACTACTACTTCAAATAAA
AAGCTGAGTACTCCCTCCGTTTTAGTTTATAAGTCTGACACGTGTATCTAGGTCGTCAAT
TNNNNCAACTTAATGAGAGGCATATATTAAAAAATAAATATCATTAGAAACTTTAGATGT
TCTATTTTTTAATGATGTAATTTTTAGTTAAACAATATATTTTATATAANTCAAATTGAC
GACCTAGGTACACGCGCATGCTTTATAAACTGTGACGAAGGGAGTATCAAAAGTGCTCTT
ACGATACCTAACTCACACGCACCTGGCCACCTCGGTAAACAGTAAATCCAAAAAACTAGT
AAAGGAATCAAAAATCCTGTTTTTTTTTGCAACAAACATGGATGAGTGTTCTACCGTGTG
CAAATTTTGGTGATGAAATAACATTTATGGAGGTCTAGGAAACAAAAAAGATGCTAAAAA
TGTCCTTTTGAAGTATTGATTTTGTTTTTATTCAGACTTCCACAAACGTCATTTCATCAT
GAAATTTTGCACATTGGTGATACACTCATCAATATTTATAAAAAACCAAATGGTTCTTAA
TTCGTTACTTCTTTTGGATTTTACTAGTGATCCGAGGGCAGGTGAGCTCGGGATGAGAAA
CGTCATATCCGCTGACTTCTACTTTCTCCGACTACAATTATTTAGATACGGAGGGAGTAT
TTCAGTGGTAGGCTAGTTGCATGCCCTTCTTAAGTGAGAAAAGGAATATTTTTGGCCCCT
TAGTCTACCCGATGCGCATGTTTCATTCCTCATCCTTTTTAAAACATTTCGTCCCTCGTA
TTTCTAAACCACGGTTCATCCAAAACTAGACCGAAGTGGTATAAAGCTGACATGTCACCG
GTTTTAGAATTGTACTTGTCAGATGGCAGTCCAAGTCAACCCCTTCATCTTTTACTTGGT
CAAACTATACCGTGGGATCCATCAATAGGATTAAAATTATTTTATAAATAGTAAAATGTT
TCAATTAAGCTCTTGCCCCGCTGATGAGTACTCCCTCCGTTATATAATATAAGAGTGTTT
TAAGACTACACTAGTGTTAAAAAAACTCTTATATTATGGGACGAAGGGGGTAACTCATAA
GCACCAACCTAACCCACTAAAGGGCCAGACCCACCCGACATGATTTCGTCGGTATTTGAA
CACCGATGAGGACACAAGTATAGCGCGCTACATCACATTGCTACGGAGCAAGCTAGGGGG
TAAAGTGTGGGCATAGAGGCACATGTAGCTACGATATGGTCGATAGGACATGCTTCTGGG
TGCTGCCACAAGCGGTGGCATTGAGTAGGAGGGAGACACAAGGCATGCAACAGTTCGTCG
TGAGAGGGGATAGCACGACGAGCTCACCCCAACCACGACCACATTGTCGACGGAGGCTAA
GGAGCACGACATCTACGTTCTCGTCGGTCGCAACGAACGATGGGAAGTAGTAGGCTTGGG
GACGCGTGACTCGACTAGTACAACGACAAGGGGTGTGTAAACGCATAAGGCCTTGTTTGG
TTAAATCTTTCTTGAAGAGGATTGAAGAGGTGTAAAGGGGATTCAATGGAAATTTGACTT
GAAGGGGATTTAATTCACTTCAATCCCTTTCAAACCCTTTGCAACCCAACAAGCCATAAG
TATGACACATGGAAGAGCTAGGGTATAACGACGGTGACGAATCATTCCAACAACACCTGT
CCAAAGACAAAAGAAGATGAAAACCAAGACCAAGGGAGAGTGTGTTGTGTTGCATGCCCG
GCCTCGTCCTAGATCAATGTGTGCGACATGATGATGATGTACCGAGGTCAAAGGTCAATA
CCAGGTCAATGCAAAAAAATATTAGGAATGTTCTTTAAAGAAAGCCTACTAGCACTTTTA
TTTATATGTGCGAGAGTTACATGATGAAGTAAAAGAGGTAATAACAATTCAGGAGCAACA
TCCACCCAAAACATAAGCTAGTTTTCGAATCATAACAAGTCCTAGGCAAGAAATGTGCCA
GCCCATTCGCTTCCCTTGGACAAAAACTGAATTATGTTGATGTAACACCATGAGCCAAGT
GAAAGCAGTCCCCAAGTAATGTTGAGGTAGGTCCTCGAATATCCATATTACCATTGCAAG
CCTCCATCAATTCCAAACAGTCGGATTCAAGTTCGACTCTTGAGCATCCAATTTCAAAGA
TCATTTGGAGCCCTCGTCTTAATGCTAGTGTCTCAGTAGCGTGTGCATCATGTGTGTGAT
CAAACATCTCATAGATTAGGGATTAAACGTACACTTTGCGTAAAATAGGCACTACAAAGT
AAAAACAGATTCCCCCAATATAAGGTGCTTCGTTTTCATGAAAATTAAACATATATATGT
TTGAGCAAGATTGAATTAGAATAAATGGGCTTGACCTATCTATAAATTCTGGAATCTTAA
AAGAGACCATGAATAAAATGGCAATTGATGATGTTATGATGCTAAAGTTTAGTCCCATAT
CGCTAGTTGAGTAAAAGTTAGACCTCCCTCACCACTAAAAGTTGGTGTTGACAAGAGAAA
AGGGAAGACCGCACGCGCGCTCTCCTCGCCTAGACGGGGCGACATACAAGCCGATAAGAT
ACACCGAAAACACCTAGGGTTTTACCTTATCTCGTAATTTATGTCGTCACCGTAGTCTAC
CTCATCTCAAACGCCGGCGTGCATGGACATGCGAGAGAGCAGGCCTCCGAAACCATTCGT
CTTTGCGATCCTGCATCGGAAGAGGACGAATTAGATTTTTGGACAGCACTTTGTGTGACT
GCTCAAATTCGTCATCACGGGTCGCTTACCATCCTAGTCGGGTGGTGATACTCATCTCCG
TCTCCATCGCCGTCAACAACAGATCGTCACTAACATTGTCATCAACACCGTCGCTCCTAC
AACAACTAACAAACAATATGTTATTCGTAATCTGTTAATGTCTCTCCCTGTAGTTACTAC
TTTGTGTGAAATAATGATGTACATATTCTGATGTTCATCTAGTTTACTAGATTATTTTTA
GTTCTAGTCATGAATTATTTACTGGAATTAACCATGATCTTACCTAATTTTCCAACATAT
TATAAACGAAATATTGACTGTCATAAAAAAATAGATAGGACCATTCATCATTCATCAGCA
AGACAAAGGCCTCGTGAAGCAAGACACTGAACTGAGCACAAACTATCGGCGCCCACAAAA
TTTGCAACCAGCGCAAACGGGAACAGCCGAACAGCCCATAGTTTAAGCAGCCCAAAGGTC
AACCACCTCACCTCGCCATCTACAAAGTTCGGCCCGCATGCAAGAGCTAGCAAAGACTCC
GGTGAGAAAGTGCAACCAGCGGAGGCAGGATCAGCCAAGAAATGTGTGGGGGAGCCATCC
TCGCCAACCTCACCCCCGACCGGGTGCGCCGGCGGCTGACGGCAGCCCAGCTCTGGCCGG
ACGCGTACTTCCCGGCGGAGAGGGCGGCCTAGGAGGAGGAGGAGGAGGAGGGACGCTGCC
ACGACCGACGACGATTTCGAGGCAGAGTTCCAGGTTTTTGAGGAGGAGGAGGACGACAGC
GACGACGACTATGAGGCTCCTCCGGCGGCGGCTTCTCCAGCAGTTGCTTTGGGCTCCAGT
CGGCGCTGCGTAGCCGGTGCCAAGAGCACCAACTACATACGCGTACGCCACCGGACGTCG
GGCAGACGGGCGGCAGAAGACACCCGGCAGCGGCGGCGCGTGTGGCTCGGCACGTACGGT
GGTGACGCCGAGGAGGCCGCTCCAGCGTACGACCGCGAAGCCCGCCGGGTGCGCGGGAAG
AGCGCTAGGCTCGACGACTCCCCGAACGAAGGCTGTCCTCGCCGGAGAAACCTGCCGGGG
ACCATCGACCTCAACCAGCCGCCCGCCGTTTCCGGTGACCACATGGTCAGCGCCGATGCC
GACGCGTGCAAGGCGAAGATCATGCAGCTGGTCGCGGAGGGCCCTCGCGACGGGCGGATG
GCGGGCCTCGCGTCTGAGCTGATGGACGGGGCGCGCCATGGGAGCGAAACCAGAGTGTCC
GTGGTGATGCGGTGTGCGGCGTTGATCTCCAGATGCAGCCGCGAGATGGAAGAGGTTGCT
GCGCTCCGGAGGGGCCTCGAGAACCGCGCGAGGCGGCTGGATGAGCTGAAAGATCAACTC
GTTAGGATAGCTTCCCTTCTGGGCTCTGAATTCTGATTGACTGATATCATCGGGCATGTT
TGAGCCTGTTTCTTCGTGGAACTCTGCTCTGACTGTATGAACACACATGGACCGTATGAA
CAGTGATCTCGGAAAAATGGTAGTGGGAGTTTTTAAAAAATCCTGGTTTCTTTAGCTGAA
TGAGAAGCTTTCCAACCACTAGAAACATTCTGTAGTACCCTCTCCGTTCCTAAATATAAG
TCTTTTTAAAGATTTTATTAAGGCCTACGTACGGAGCAAAACGAGTGAATCTACATTCTA
AAATATGTGTATATACATTTGTTTGTTGTTCCCTAGTAAAACTTTTAAAAAAACTTATAT
TTAAAAACGGAGGGAGTACAATATTTGCCAAAATAACATTTTTTTACCTTTTACCTGTTC
TTTTTGAATTTTCAACGGGTGTGTATGTGCTGGCAAACAGAAGAGAACTTTAGTTCAATG
CGCTACTTAGTGCAATACGTGAACGGTCGGTGGATTCTCCAATGAAGATTATGTATAATT
GCATTCTCCAATAAATGATTTTGGATAACCGCACTATAAAACCAGAGAACTTCTCGTGCG
TTGCAGCGGGAATTGATTGCAATATACTAGTGGTAGGAACGTCAAGAACTTGCCTCAAAC
GTATTTATCTAAATTTTTATATTTGTGAACATGCTTGTGTGAGTAAAACAGGTCAGCAAC
TGTATATAAGTCAGAGTTGTTGAATAAAGAATTACCCCAAAAAGAAATACACATAAATCG
CAAGCAAACTAATGCAGGAGATCCATATTAAGAAGTGGTTCACTATCTAACATGATGAAA
AGCAGGGAACAACTATGGATCTCAATCGAAGCATAACATGGTTCAAACGACGATGAATGT
GTAAAAGAGACACATAGTTCATGCGATCACGAGAACATATAGATTTGACATGTTATAGAT
CAGCTAACAACGATAGGCAGATGGTATGCATATAGTATTGAAGACGCTCACGTTATCGTC
TCTATAGGGGGTGAACGGTGAGAGAAAGTCGGCGGTGGTGCTGGCGTTCGAAGTGAAAAG
TGCAGATGTCACCCTCAAGAATGGTGGCATGATGATGGAACCATGACCAATTGGTCGTGA
TCGTTGATATCTTGTCGATTCCAAGGATTAGTTGTGCGTTGTAGCTCACAATGTCATCTT
CATTCTTCAGTGAAAGATTGTCATCTTCTTTTTGAATGTATTTCTGCAACTTCTCCTCTA
TGTATTTCACCTGAAAGTACCGTGGAGAGAAATAAAAACACTACTGAGAGATTACATGTA
TAATTAACAAATATGGAAAACATATTTAATATCTATTAAATGTAGTAAGAAAATAGCAAG
CGAAATGGATGTGAATTTATAACATTCGGTATAACATGGTATTCATCAAAAAATAGTATT
ATAGTGGAAAAAATCTGGCAGTTAAAGAAAATTGACATTGGATGTGAATTGAACAAATAG
AAGTTATATTTGTCGTATAAATAGTGGGCACAACACGAAAGCATGAGTGGTGATGTTGAA
ATAATAAATTGAACATGAGAGACATTGAGTGGTAATGTAAGGATAATTAAGATTTAGTTG
TCTGGGATTAGTGAGTATAAATAGGTATGGATCTTCTGAAATAGAGGGAAAGGAAAAGTT
ATTACAAGTTAATGGATGGTATAATGTACTATTAATGCATTAGCATGCGCTTGTTGAATG
TAACAATGTGCAGCTGCAATGGGTTGATGCAGTGTTGGTGAAGAAAAAAGAAAAGAAAAA
CATATGTAGGCAGCATGTATATCAAATTTGTGATCACGGTGTTCATTCATGCATGTTGTT
GGTCGTTGGTCTGTGCACCTCAATAGAAAGTGAGACTTTGTAGCATGATGTTATAAATAT
GTAGATTATGAAGGTAGTAGGCATTGATAGATCCTGTGGATCGACAAGGCTAGATGTGTT
CGGTGTGATGTGGAGATGTTACCTTGTGATGAACTCGATGAGCTCCCTCCGGTCGTCCAT
CGTGAGGTGGTGACGACGGTGGGGAAGGAGAGAGATCCAGTGGCG