Map Locations of contig_42082 (9336 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_42082

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57769 7 5362 bp AK250721.1 Available Available None
MLOC_57770 1 1355 bp None Available Available None





CDS Structure of MLOC_57769






CDS Structure of MLOC_57770






Contig Sequence (9336 bp)

>contig_42082 9336 assembly3_WGSMorex_rbca.fasta
AGGATCTGGGGTGCTATTACCTCTTTCATTTTCATGTCCGCCCAAACCATTATGGCTTGA
TCTTCGTGGCCATGCTTTCCCAAAGAAGAAGCCAATGTGTTATATGTAGCAGTATCTCGC
TCTGTCATCAGTTGAAAAATATCTTTGCCCTTTTCTAGGCAACAGCATTTGCAGTACAGC
TGAAAAATGTCTTTGCCCTGCCGACGGTGGCTGAATAATTAGGCAGAACCGGAGGGAGCT
ACATGCAAAGTGTCACGAGCTGGCCCGCCCTGTCCAGTTGGCACGTTGCTATTGGCCGGT
GGTGAGTTTGGACTGGGTTTGCACATTGCCTGCAAGTTCTGGGAGTGGGTAGGGTCATTT
TTCAACTTTTAGGACTCAACCATCACATTCGGTGCAAGTTCTAGGACCCCTGGTGCTATT
ACCTCTATTTTAATTGTCACATGGCAGCTAGCATAATCTAAAGTCATGTCACATCAGAAG
TTTCTCACCGGGCTGGAGTTGACAGTTTAGCCAACTGGATATATTTCTTGCTGAGTATCT
ATCATTTATTTCCCTAAGCTCGGTTCTTCTATTTATTTGTTGTTTATGTTCATTTAGTCA
TTTACTAAAAGCAGTGTATTGGTTCCTTCTCTGTGACAAGTGGGCACTACTAATTCCTGA
ACCAAATCAATTTTGTAATATATTTTGGGCGATTTGTTAACCTTTTTTTTTTGTTTCAGG
TAAATTATCGAGTCTGGCAGACCTAAAAGATATACCATTTTCTGTTAAATATTACACACT
TTCTAAAAAGGACTTGGAAGATAATGGCTACCCACTCAGTTTACCAGGTTAGTTTTTATT
TATTTATTGACTCTGCCTTCCAATTTTATGCCCTGACGTTAAAATGGGTGTTTGTTCTTT
TCTGCCAAAATTTTCAGGTTTTGTCCCTACGGTTGCAGCTCCTTCAGGCTCTTCCCCATA
CGAAATCCTCGGACTTGATTGTGAGATGGTGATAAGATTTTCTGATTCTTGAATTTTAAA
ATACTGCTGTACATTTTGAAGCCCTTATTTGATTTGTTCATCCAAGAAAAAAATTTGAAA
TATTAGGTTTATCTAGTTGATAGGTTCATAGGTACACTTATGCCACTTTTTAATTCTTAT
TCTGATATTCATTAAAAATATATTTCATGTACTTTATAATTTTTTCACTTTTCAGTGTGT
GACAGCAGCTGGATTTGAACTTACGAGAGTAACATTAGTCGATATTAAAGGAGAGGTATG
TGTAATTCCCTCCCCAAAGCTTGGTTAGAGCATTCTAAGAAAAATCGTCCCTATCACAAT
AATCCTGGACTCAGATTTCTGTCTTCTTTTTATCAAAGTGATCTTAATAATTTGACAAAA
AACATATTTCTTCTCTATAATATGTGCTGGCATGAACCATTATTTTTCTTCACACTTCAG
TGCCCATACTATTTTTTTTGTAATCTCTTCAGGTGATACTGGATAAACTAGTCAAGCCTA
CCAATCCAATCACTGATTACAATACAAGGTATATGATGCCTTCACTTTCCTTTCTTGTAG
GGCTAGCTAGCCTGAACCGGAACTATGCTATATTTTTCAGCCAGTTTTCCTCAGCGTATT
TAGGTTATAATAACTTGGTTGTGATTGATGAGGATGCTAGGATTTGGTGCTTCTATTCGA
AGCACATGTATATTAGTAATATTATTATCAATATCTTTTTTAATTGAAATTCCACTTTCC
TAGTTTATGCCTTTATATTCCTGTACATGATTCTGTTCATAATATTCTTAGGTGCTGAAT
GATAGCTTTGAGTATAATTATTCTTAATAGTGCAGGTTTAGTGGAATCACTGCTGAGATG
CTATCCGATGTGACAACAACCCTCCAGGAGATTCAGGTCAGCTGTTTCTAATTTTCGCAT
GATCTTTTAGTTTTTGTCACCATTTCATCCTACTTTAGCTGATACCATTTTGTCTCTTTT
CAGGAAGAGTTTGTTGGGCTTGTGTACAAAGAAACTATTCTTGTTGGGCATTCTTTGGAA
AATGACCTTTTGGCATTACGGATATCTCATGACTTGGTCATTGATACTGCAGTTTTGTAC
AAATATAATCGTGGCCCACGCTGCAAAATTGCTTTACGTGTCCTGGCAAACAAATATCTT
AGCCGGGTGATCCAGAACACTGGGTCTGGGCATGACAGTGTGGAAGATGCAAGAGCTGCT
CTGGATCTTGCCTTTTTGAAAATCAAATATGGTAAATCATACTTTTCAGTACTGTTTTTA
TTGCTTTTCCGGTTAGGCATGGATAGGTTATTACAAGCACATGGTTTTTGGTATTCGATT
TGTCTGATTTGTTGCCTTTCTGTGGTAATGTTTATCATCTTATTTTCCAGGTCCTGATTT
TGGCTCTCCACCATCGTTTTCACGGAGAAAGTTGGCTTCCATTCTGCATGAATGTGGGAA
AAGGAGTTCACTCATTGATGAAGTGTTTGTTCTTGACCGCTATTCAGATGCTTCCAGCAA
TTCAATTGCAGTTTTCTCAGATGATAATGCCCTCTCCAGATCAATGAAAGAGGTTAATAG
TTAATACTATTGTTTCTTTGTTAGCGGTAGCATTGCTTTCAGTAATTTTTTACAAGTTCT
CATTAGTTGCTAAAATATACTGCAGGTAAAGAATGACAAAATCAGCTTTGTCTGGACCCA
GTTTTCAGGATTGATCTCTTATCTACGTAAAAGAGCCGAAGATCCTGTAAAATTGAAATC
TTGTGTTGCAGAGGCTATTGCATTGAAAACATGTGATAGAAAAACTGCCCGGAAAAGAGC
AAAACAAATTTGTCCAGAGCTGAAGGGAATTTTGAGTGAATTGGACAAGAAAATTAGAAA
ACTACATGATACACTGCCTGAAAATGCAATGTTCATTATATGTACCGGTCATGGGGATAC
TCCTTTGGTACAAAGGTAAATTTATATTCAGAAAAGGCATTTCTTGTATTCCATTCTAGT
TTGAGTTTGTCCTTCAGCTGGCTTATAGGCTATTACTTGAGTTGGAAAACTGCTGTGCCA
TGTTACCTAGTACTACCTTTACTTATCGTGGTATGGCATGCAGATTAAAGAAAATGCTCA
ACCACGGAGAAAAAACAGTCGATAGCCGGGAAAATATTGTCCATGCATTGGAAGATTTAC
AGGCCCAAGCAGAAGTTGCTCTATGCTTCTGTTGTGTCAAGCATTAGCTGTAAGCGACTT
GACCTTTTCCCCCGCATGTTCCGGAGATAGAACTCGATGCACCATTCTGAGCTTGCACTG
TTAACAACCATTTTTCAAGATTGATGTAACTTACAAACACACCCTTCAGTAGTTGCAGCC
TTGCTGGAAGGATGGATTCAGGTGTGCATCCTGACTGACACTGTCACTTTTGAAGATTGA
TGATGTACCTGCAAACGGCTTCTTTAATTTTATGAAGGATGGAGTTATGCATGGATTTGA
TCCTAACCGACTGACATGAAAACTTGAGGCTAATCCAGGGATTTAGCTTTGAAGCACGGC
TTCGAAGGCGGGGGCATGCCTTACGATTTTTTTGGTGGGCTGGGATGATAAGTTGTACTG
TAGAGTTTTTTGGTTGGCTGGGATGGGATGATAATTTAGTGGGCCCGGATGGTAATTATT
AATTCTAGCAGTTTCGTCCCGCCAAGTTCATAGCATCCGCCGCCTGCAAGGAAGGGCAAG
ACATTCTCGTAGGCACAAGCACCCGTGCCTTCTTCAGAATAATCTGCGGTAACGTTTATG
TAATCAGCCCATTTTGGTTTTTGTGGCACAAGATTCGGGCTAACCATTTTTTATTTAAAT
GCGGTCTTTTAAGGCTTGATTCGTTAAAAAAAAGGTGGAATGGAGTTGCCTGGTTAAGAG
CATCTCCACTCGCCCCCAACAGGCCTCGTAGTGCGTCTTTTTTAGTGTCGATGGTGAAAA
ATCGTTCCAGCCAAGCCCCCAATTCCTCGTTTATCGCTGATTTGGGTCGAAATGATGACC
GGTGAACTCGAGCCGAACCCAGCCTGTCGGTGGTTGTCTAGGGCATCGGCCGAAGTGAAA
AGGCTCGTGTTGTCGGCGATAGATGGGCCTATTCCTGTCGCTTTTTCCACCTTCCCTCCA
TTTTCCTCATTGCTTCCCCTTCTCCCTGGTCGCTCCCGTCATTCTCTTCCTGCTCCCTTC
ATTCGGCTGTCATGCCATCGAAGAGGTATTCTGCCCCTTGCCTCGCTGCTGCTGTCGATT
CCACCCAGCCAAAGTTGAGGATGTCGATGTAAGACCGCCGGCGTGTCGAACATCGTGTGG
AATACGAATGTCCAGCGTCGGGAGGCGATCACAACCGACCGGCGGAACAGTCTCATCGCC
AAGAAGGCTAGCGACGCGACGGCGACGGCCGAGCACGGACAGGGTGCCTTGCACGGAGAT
GATGAATCAGCCTGACCACTACCCGCAGGTCGCGTGGGGGAGCGAGCGTCGCGTCGTCGG
CCAACTTCTCTCTGTCGTTGCCGCCCTCCTAGGGGTACGCACCCTCGTGTGGCTACTCTG
ACAGCGACACACATGGCGGTTTCAACCCCAACATCACCTTCCCGCATGGCGCGCCGCAGC
GTTCCTCCCCCTCCGGTTTCAACCCCGACCAGTTACTCCCTCCCATGCGTTCAACGTTGG
TCTCAACACCAAGTACAACTACTCGCCGCTGGCGTACTCATCAGCCCCGCCCGCGCCGGG
TTGCCCTACCCTTTGTACTTGGCTTGGCGCCACAATTTAGCTACACCGACGCCGACATGG
ACGAGATCATCATGAGCGGCTTCGTCGCCACCGTGTCATGTCTGGGGTTCGACGTGCAAG
ATGAAAGGATGGACATTGCCGTCGACATGGACGACGAGCTCGACGACGCCGAGGAGGATG
AGGATGGGGAGGAACAACGCGCGGAGGCGGATCCAGAACCAGCGCTGAAAGGAGAAAGAA
GAAGCGGGCGTCGAAGCCGGGACGGGCGAACCTCACGTAAAGTGGACGTCCAAGGAAGAC
CGTCAGCACCGACTCGATTACCGGCACGAATCAGAACATCGACATGTACTGGAGGAGAAT
CAAGACGGCGCTCGACGAACGCAAGCTGGTCGACCCCGACTTCGTCAGCATCCACAAGGA
CCGCGACGAGAAGGCCATGTCGAACCACTTGTTGGCGATCCATACGGCCTGCAACAAGTG
GCATGTGATCGTCGAGGAGGCCGCTGGTCGCCCGAAAAGCGGCACCAACATCGAGGGTCA
GGTATGGACATAGTTTGCCGGCCTCAGTTCATTGCGTCGTCGTGTACTTTGCCGACACGT
TTTGTCCGCGGCTATGCAGATGGTTAGGATGTTCAACATGTATCACCAAGACAACAAGGA
CCAAGAGTTCAAGTTCCTTCACGTGTTCTCTAGGATAGAGTCGCGCGAGAAGTGGAGGGA
CGTTCGGCTCGCTCTCGCCAAGGCCAAGGGGGCCTACTATCCGGACACGCCTTCCCCGGC
TGCGGCAGAAGGGCGCCCCGATGGCAACAAAAGAGCCAAGACAACGAGGGGCATGACCCC
GTAGTCGAACGGCTGCAATCTTCGATCGAGCAATGTACGCCGACGCCAAGAACAACACCG
CCAAGAGGGAGGAGAAATCCGACGTGCAGTGGTTGACGTTGATGACGAAGCAGGACACAA
GCTCGACCTTCTGAGAACCAACGTCGTCGCGAAGAAGAGGAACACCGACCTGTCATTCTT
GATGGCGGCAGATGGACGAGCAGGTGAAGGCGTGGTACCTCGTGGAGCGCGGCCTCATCT
TAAATGAGATGCCCGCGCTGGCGGCGACCACGAGGACAACACCAACGACGACGCCCAGCC
TGAGCCCGAGCACAGAAATCACGCCGACACCGAGCCCGACTACGCCGACACCGAGACCGA
GCCCGACTACGCCCACGCGCACGCCGACCCCGGCCAGTCCCGCGGCAGAGGAGCCGACCA
TTTGATTTGTTCCATGTCTATGATTCATTCCTTTTGATCACTGAACTAATGGGCGTGTTT
GATCGCCGAATTGTGGCATGCTGATCGTCAACTTGTAGCATGATGATCGCCGAACTGTGG
CATGCTGATCGCCAACTTGTGGCATGATGATCGCCGAACTAGCGACATTTTTTTGGCAGC
AGGAAAGACGGCTGGAGATGCTCTAACTGGGGGCGCGGTTGGAAATTTGCTCGCCCGAGG
GTGGAAAAAGCGTCGGCGCAAACGCCAAAAGGCATCCGTCGGGTGCGCTGGGGGGCCAAA
CGGCTGGAGATGCTCTAACTAACGAAAATTCGGACGAAAACCGTTACAATATGTCCATAA
AAGTGCCACACTATGGACTTGCATCAACAAGGCCACACACACCATAAGAAGAGGACACCG
TCGAGATTGAGTGCCATGTCAAGTGAGAACGAAAATACAAGTTACTAGTGGCCAGTTCTT
TTGAGGTGATTCGCAGCAATCACGTTTGGAGAATCGGAAATCGCAAAAGAACTCAATTTG
CTTCTTCAAAATCATACGAGAATCGGCATGCAAACAAAAATCACCAGAAAACCACGATTC
TGGTCGATCCCGCAAAAGGTAACAGTTTGTTTTAGGTCTCTACCCCTATTGGAGCACCGA
ATTACATGCAAAATGCCACTCCGGCCGAATGACAGCTCACGAGCGAAAACAAATCTGGTT
GGCCTTTGTCGCTTGACTCCCCGGGCACCACCCCGATAGGGTTTCCTCGATCCCCAGCCA
CCTACCCGCGGGAGGAGGAGAGGGCGCCGCCAGCCGGATGCCCCGTCGTGGCACCGTCTG
ATCCGTCGGCGAGCGGTTCCCTACGACGGACAGGTTGTGTGGCCAACAACCAGGCCACCA
CCGCGCTTTGGGATGCAGCACGCCTGCGCTGCTGCTGCTTCGTTGTGTGCGGTCAACAGC
TAGCCTGTTGTTTTGCTTGTTCGCTGTGTGGGCTGTTGTTTTGCTTGTTCGCTTCGCTGT
GAATTTTGTAGATGACAGATCTTCTGTGTGCTACTGTTCCATTCATATATGGATGTTGTA
TACATTAAAACATTGGCATGGGATGTTGTAGATGGAGAAAGTGAAGCATCTGAAAGCAAC
TTGAGATAGTGCGGCACATTCCAGTTATATGAAATTTACAACCCGCTTCCATGTTCATAT
TAGACATGAAACTATGAGAAATATCAGTTCAATCTAAGGGCATTTCTGACATTTCATCAT
ACAACACATACAACAATCACAGACTAGAATCATAGAAAAGAACCGGACAACTGATTATGT
GGCCAGACAATTCTGTGTGCTGTTTCCAGAATCACATTATGGAGAATTGTGACGTAAAAA
GGACTGGCCCTAGGTGCTACAAATGCTTGGGTTGGCATGTTAGTTTTTTTAACACATCAC
AGACGCAAGCATTCATATACATGCACATACACTCATCCTTATGAATGCATACACGCACAC
CATACTTTTATGAGCAATTTCAAGATACTAAGCCGACATATGATCTTGAGATTTACGAAG
TCACCATAGGCGCCTTGTCGTCGACGGAAACATTTCCTCCCGTTGAATGCACATCGCCAA
AAAATATGAAATAAATTCAGGAATAAATGCGAGCACCAAGATTTGAACCCTCGTGGCTTG
GGGATACCATAGTCACTCTAACCATCCAACCGCAAGTTGGTTCGTGTTGGGCTGTTAGTT
TGGTGTTGCAATCAGTAGAAAAGCTAAGCCTCTCGGAATAGGCTCACGCCCCGCTTTATA
TATAAAGCAACAATCAAAGTATACAGTCGAATGATACAAAGTGGAGAGGTAACCCCTTAC
GGAGCAAATCCTGGGATCTATACGGATAGAATACGCTACCAAATAAGAACAAAGGAAAGA
CAGAGTACAACGCCACGCCACGCCTAGCACACCCATGCTCCGCGACAATGCCCACATGAG
GGAGAACGGCGCAGAGCATCGCTGCTGCCGAGTATGGAATGGACAAGGGTCTTCACCCGG
AGCCTGGATACAGAGAGGAGAACCACAATGACGTCTTCAAGAAGAAAATGGCATCCACGG
GCATTGCCGTCGTCTGTGCCAAAGTGCGGTGCTTTCGCTCGGTAACTCATCCATGTCACA
CGGAGATATCCATGACATACATGACACAATCCAACTCCCAGGTCTAGATGCGGGCACCGC
CACGAGTGACGTGCCCGAGCCACCTGCCGCTAGACCTCTCGCTGCCCACACCACCAAGAG
GAGAAGCCACCATCGCCGCCATGAGCCACGCCGGAGAGCCACTCATGGGGACCACCTCCC
TGGGCCGCTACCCCGGCATCCCTGTCCCAGGACCCCATCCGCCATCCACCACACAACACA
CCAAAACCGACAGGTAGGGTAGAAGGCCGCCCTTCCACACCTAGCCCGACATCAGTCCAT
CTGGGTCAGCACCTCCATAATACGAGGCGCCTACGCCTGTATCCCCAGCCAGCCTCGATG
GACCCGGGGACACGACCCTAGGACTGCCGACGACCGTCGCCCAGCTGAGCTTGCACGACG
CAAATCCGAGATCATCGGTGTTGCACGACACGACGAAGAAGCAGAGTCAGGACCACCAAC
ACCATCAACTGCACCCGCCAGGACAACACTCACGGGTACATCCCGACCGAGCCTAAACCT
CACCTACCCGGAGAACACTCCGATCCGCCTCGGGCCAACATCCGTCCCACCCGAGCACAA
AACCTAGGTCAGCGGAGTCGTCATCGTGTGTGCAGCCGACCAGCCCCGCACGCCACCGGC
CCCAACTCAGGAGAAGGGAGGTCACCATGCCGCCACCCCGCACCACCAGCCAGACCACGA
CCGCCGCGTTACCGGATCTGCACCAGCCCGCCCCGCTAAGGGAGTCTGGGACGAAGGGGT
CCTCGGGCCGCTTACCTATTTCAATGGGTCGGAGTCTGGGCCGTTCTATCATCATTATTG
GACTCCGAATAAATGAAGTGATGTTGTATTCGAGACGGACTCTTCCAAAGACTTGGCATG
TACTCCATGGTCATGTGGTGGTCGGCATGTTCCCTCCTTGATGTAACCGACGTTGTGTAA
CCCTAGCACCCCTCGTATCTATGTAAACCAGAGGGCTTTAGTTCATAGGACAGATTACGT
TCATTACTCCTAAGGTTAGGACCACAACATACGATCTCGAGATAGATCAACTCTGTACTC
GATACTAATACGTCTCCAACGTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNATATTATC
ATTCTAGAATACTTTTAGGGTATTTATTTACCAATT