Contig Data
morexGenes
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Map Locations of contig_42050 (5364 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_42050

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57743 1 301 bp MLOC_57743.1 Available Available LOC_Os07g35660.1, FRAME:+2, EVALUE:9e-19, 13107.m03651 protein TKL_IRAK_DUF26-lc.21 - DUF26 kinases have homology to DUF26 containing loci, expressed
MLOC_57742 1 1739 bp MLOC_57742.1 Available Available LOC_Os07g35260.2, FRAME:+1, EVALUE:2e-103, 13107.m03604 protein TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed





CDS Structure of MLOC_57743






CDS Structure of MLOC_57742






Contig Sequence (5364 bp)

>contig_42050 5364 assembly3_WGSMorex_rbca.fasta
TTCCCCCCCCCCCCCCCCCCGGTGCGTCGTCGGGGCTCCCTACCGTAATGAGCGGCATGT
AGGAGCTCCCGCAAACAGCGCGGACCTGACTGAGCGGGGAGCTGCTATGCACCACTCGCT
ATGGCATATTGCAGAGGAGGTATCGAACAAGAGACCTCCTGTTTCTTAAGCATGCTCCTA
GCCAACGAGACTAGTGACCTTTGTATGTTTAAAATTGTGCGTGGAGCTAATGACCTTTTC
TAAAAGGTTACGATTTTGATATTTTTTGAGTTTTTGAAACTTAAACAACATTTGTATTTA
CGAAAAAAAATATAAATGGAAATCTTTTTGAATTTATGAAGAATTTTTCAAAATACGAAC
ATTATTTAAATATATGAGCAATCCTGCACGCCGTTGTTTCTGCAGTGCGGTCGTTGCAAG
ATGACGTTGGATGCGGGTCTGTCGAGGTCGGGACAAAGTTTTGTAGAAACTTCAGTTTAG
CTCCTGCATGCCGGCGACGGGCTGATTTTGCGGTGGGTTGACGGCGGCGCCGTCTGAGGC
GCATCTCTGTCGGGGCCGAGAAAGAGTGTCTAGTTTGTGCAATAGACCGTTTTTGCGGGA
AATAACGACTGAGCATGCGGGGCGCGGATACTAGATCGAACGGCTATCAGCTAAAAAATC
CAAAGGATGTGGAGGCGATGGATAATTTCTAAAAATCGACCGATGGACGCATAGCGTTCC
GCTTTTTATAAAGATGTGAAAACAAGAATATTTTTTGAAAACTGTGAGCAATTTACGAAA
AGAGGAACATTTTTTGAAAAGCCATGCAATTTTTTGAATACGAAACAATTTTTGAAACAT
GAACAGAAAATATGAACACATTTTGGAAGCAAGAACATTTTTTGAAGCACAGACATTGAA
ATATAAATTGTGAACAAATTTTTGAACATGAGAACATTTTTTCAAATTCAAACAAAATTT
AGAAAATATAAAATAAAAAGTAGGAAAAATAAAAAAGGAACCAAAGTGAAGGAAAAAATA
AAAAAGAAAGAATAACCTTTTTTGAAAAAGAGAACATTTAATAAAAATAATGACCATTTT
TGAAATCCCAAATATTTTTAAAGTTAAGATTTTGTTTTTGAAAAATGGCACATATATGGA
ATTTAGAACATTTTTATAAAAGCCAAAACATTTTCTGAATTTAACAATTTTCAAACATGA
GCTTAGTTTTAAAAGAAATAGCCATAAAAAATAGAAACAGAAAAACGAAGAGAGTAAAAA
ACGGAAAAAACGAAACTGCAATAAGGACAAAAGAGAAAATAAAAAACCGAAACTGTCTGC
AGAGGGAGATTGGCTGGCTCATTTGTTCGGGCCCCTGTGCGTTTGGTTGACTATTTGACG
CACACAGCGTCAAATAGGATTTCCGGCTGAGTGGCTGGGCCGCGCGAGCATTTATAGGAG
GCCCCACGTTTCAGAACTACCAACGACTCTCTAGTACTGTACAGTAGTCTAGTCAAACCA
GCCCCAGAAGGCCGCAAGGCCCTACCTCCCGTACACCCCTCAACATAAGCCTTCCACCCT
TCATCGGTTTACTTCAGTGGCTGGGCCGTCGTTTCTCCAACCTGTTATTATTTCTACAAC
ACGGTTGTTGTTTCTGCAGTGCGGTCGTTTCAAGATGACGCTGGACACGGGTCTGTCGAG
GCCGGGACAAAGTTTTGTAGAAACTTCAGTTTAGCTCCTGCACGCCGGCGGCGGGCTGAT
TTTGCGGTGGGTTGGCGGCGGCGCCGTCCGAGGCACATCTCTGTCGGGGCCGGGAAAGAT
TGTCTAGTTTGTGCAATAGACCGCTTGTTGTGGGAAATAACGACTGAGCATGCGGGGCGC
GGATACTAAATCGAACGGGTGTCGAACGGCTATCAGGTCAGAAATCCAACGGATGTCGAG
GCGATGGATAATTTCTAAAAATCAATCGACGGATGGGTAGCGTTCCCATTTTTATAAAGA
TGTGAAAACAAGAACATTTTTTGAAAATTATGACCAATTTACGAAAAAAGGAACATTTTT
TGAAAAGTCATGCAATTTTATGGATATGAAACAATTTTTGAAACATGAATAGAAAATATG
AACACATTTTGAAAGCAAGAACATTTTTTGAAGCACAGACATTGAAATATAAATTGTGAA
CAAAATTTTGAACATGAGAACATTTTTTCAAATTCAAACAAAATTAGAAAATAAAAATTA
AAAAATAGGAAAAATAAAAAAGGAACAAAAGTGAAGGAAAAAATGAAAAAGGAAACAATA
AACTTTTTTGAAAAATAGAACATTTGGTAAAAATAATGAACAATTTTGAAATCCCAAACA
TTTTTAAAGTTATGATTTTTTTTGAAAAACGGCACTTATATGAAATTTAAAACATTTTTA
TAAAAGCAAAAAGATTTTCTGAATTTCAAGAACAATTTTCAAACATGAGCTTAGTTTTAA
AAGAAATAACCATAAAAAAATAGAAACAGAAAAACGAAGTGAGCAAAAAACGGAAAAAAC
GAAAGTGCAATAAGGACAAAAGAGAAAAGAAAAAAACGGAACTGTGTGCAGAGGGAGATT
GGCTGGCTCATTTGTTCGGGCCCCTGTGCGTTTGGTTGACTATTTGACGCAAACAGCGTC
AAATAGGTTTTCCGGCTGAGTGGCTGGGCCGCGCGAGCATTTATAGGAGGCCCCACGTTT
CAGAACTACCAACGAGTCTCCAGTACTGTACAGTAGTCCAGTCAAACCAGCCCCAGAAGG
CCGCAAGACCCACCCCTCAACATAAAGCCTTCCACCCTGCTTCGGTTTACTTTGGAGTTT
GGAGTCGAGCCACCGCCGCATCTTCCACCGCTAGCTCTACGGCTCGCCGCCTCGCCCAAA
CGGCCGAACACCATGGCCTCGCACGACCGCGGCCGCATCCCCTCCTACCTTGCCGCCGCC
ACTGTCCTCCTCATGGCCTTGCTCCTCCCGCCGCTGGCATCTTCCCAGTGGCCGAAATGC
GACATGACCAGCAACTTCACCCAGAACAGCACCTACCAGGCTAACATCCAGGCCCTTTCC
ACCACCATTCCCAAGAACGTCTCCTCCTCGCGGACGCTCTTCGCTTTCGCCAGCGTCGGC
ACCGTTCCGGACATTGTCAACGCGCTCGCGCTCTGCCGCGGCGACATCAACGCCTCCGCC
TGTGGCGACTGCGTGGCCAACGGCTTCAAGGACGCGCAGCAGCTCTGCCCCTACAATAGG
GTCGCTGCCGTCTACTACGACACCTGCTACCTTGTCTTCTCCAACAAGAACATCCTCTCC
GCCACCAACGGCGACAACGGCGCCCTCATACTGTCCAACTTGCAGAACGTGACCGTGCCA
GTTAAGGTGTTCGACGCCGCCGTGAGCATACTCATAAACGCCACCGCGGAATACGCGGCC
GTGAACTCCTCCAGGCGGTTCGGCACAGGGGAGGAGGGGTTCGAGACGATCGACAAGGCC
AATCCCAAGATTTACGGTCAATCGCAGTGCAGGCCAGATATGTCACCGGCCGATTGCCGG
AGCTGCCTGGCGGATATCATCACGTATATCCCCAAGTACTTCACCGGGAGGCGGGGTGCT
AGGGTTCTTGGATTACGGTGCAACTACAGGTATGAGCAGTATCCCTTCTTCACCGGGCCT
TCTCTGCTGCAGCTCCCGGCGCCATCCGTGGGGGAAGCTCCATCTCCAGCGCCAGACAAC
GTGACGCCACCACCAGTCGGAGGAGGTGAGTCCATTTGGATTTACACACCACAATCCTAT
TATTTTATTTGATTCCAGCATATAATTATGCACTGTCAACACCAGCCAGGGGCCTTTTTA
CAGTTTGATTCAGTTGTGCTAAAAATAAGTAATGCAAACTTCAGAATTCTGTAAAGAACT
CGGAATAAATTAGTTTGTACAACAGCTGAGACAAAGAGCAGTTTTAACAAACCTTGGTAA
ACTAACAAAGTAAGTAAATGAGGGAAAGATTGCTCTCAACAAGAAACTTTGGAAATTTCT
GTTGTTTGGTCTTGACTTCTGCGCAGTCCCGTAGCTATCAGTAGTCCCGTAGCTATCTGT
TAATTGACTGGACAAAACGGAGAATTATACGAGTTCAAAGTCTTGCGATGACCGGGCCAG
GCGTGCATGCTTGGTTGATTGCCAGCCATAAAAACTATTCTGCAAAGGGTCCGTGTTGGA
ATTTATAGCACTCTTCCACGATTTGGTCTAAGAAAGTATATTGACGAACAAAATATCTTT
TGGTGTTTGCGCATGAGCACATGGGTTTTTTCCTTTTTCGATGGGTCATTAGTCATTACA
CAGGCTTTTCATGGCTGTTTACAACTAAAAGTGCAACCATATATTTTTATTCCTTTTGTT
TTCGAGAGAGTATATTCCTTGGCATTGGAACTCGGGCGAAATAACACATTCAGATTTGCT
ACCCATGCCCATATCCGAATTCAAAGAGGCAAGACATAAAGCTTTCAGCACTGTAAACAA
CTAGACATCAAAGATATTAATGGATTTACTCCAGTGATATCTTTGCAGTTTTCAACATAG
TAGCTTCATTATCTTAAAGATGTGTGACAACAAGGCAGATGCATCATCTCTTAGTGTCTT
GTAGGATTCTCTTTAATGTACTCCCTCCGTTCCTAAANNNNNGTCTTTTAAGCGATTTCA
TTAAGGGACTACATACAAAGTAAATTGAATAAATTTACCCTCTAAAGTATGTCTATATAC
ATCCGTATGTAGTCCTCTAGTGGTATCTCTACAAAGACTTATATTATGAAACGGAGGGAG
TATCTTGTACTGACTGGCGCCTTTCGTTCACAGGAAGCACAAGGAATGGAACTGTTAGAA
TTTTAGCCATTGCACTGCCGATAGTCGCTGCAATACTGGCAGCTGTTGTAATTTGCTTTC
GTCAATGGAGGAGGAAGAGCAAACCGGTGGCACGAAAGGCATCATTATCATGTAAGTCCA
TTATTTTTTTTTTGGTTAAACATATGAGTTTCTTCTTGTTCACAAGTGGAATCAGTTTCT
CAAAAATGATCTATAGAATTGAAACTAATGTTTTGGCATTCGGAAATAGTTACATTCATG
CGTTACACCATTATTATAATGTCTTTTCTCTTATGATAGATCCAAAAAATCAAGAGGCCA
TACAGACTATCGATTCACTCATTCTCGATCTATCAACTCTACGAGCCGCAACAGATAACT
TTGATGAAAGCAATAAACTTGGTGAAGGAGGATTTGGTGTGGTTTATAAGGTGCTAATTT
AATCATTTCGCAAAGGGTTTCTATTTTGTAAATTGCACTTCTAGTAAATAGATATCTACA
TTTGTACAGGGAATCCTTCCTGAC