morexGenes - Barley RNA-seq Database

Contig contig_42008
Source Contig contig_42008
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42008 (8009 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_42008

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57705	3	3889 bp	MLOC_57705.1	Available	Available	LOC_Os04g58960.1, FRAME:-1, EVALUE:0.0, 13104.m06211 protein regulator of chromosome condensation, putative, expressed
CDS Structure of MLOC_57705

Contig Sequence (8009 bp)

>contig_42008 8009 assembly3_WGSMorex_rbca.fasta
GAGAGCTTGAAGCACTGTCGGGATCCGCCGCCGCTGTTGCTCGTCGTCGTCGCTTGCCGT
TGCTCGTCGTCACCGCTCGCCATCGCTGCTTGCAGGTTGCAACACCGGCGCCCAATGGTG
CACTCCTCCCTATGCAGCAATGGCGGGGGCGCCGGTTCCAGCATCCGCCGCAGCACCATT
GACTCATAGAAAAATGTTGCGTGCATCAACGGCTCATCGCTGCAACTTTTTTCTCGCCAG
GCTTTCGTTGAAGCTTTTTGTGTCGATGATTGTGTCAGACCCTAAGCCGCTCGAGCTTGC
TCTCTCTCTCTCACTCTGGTTAGAGGTAGACGAAGGAGGTTTTGTGCCGCGTGCAAGTGC
AGCTTTTCTGTTTCATTCCACCACTATAAGCAACGAATACAATGCTAACTGAAACGAGAG
AATCGGGGAAGGAGCAGGTCGTGCGTTGCCATCCCAACGCCCCGCGCGCTTCGCCCGTGA
TGCGCCCATGACCATCTTGTTCGTGCCATCCCACGATCAGGTCAAGGCCGCAGCTATAGG
AAAGATCTAGCCTAGTCTATGCCCGAGTCACAGCTCAGGTTATTTGAAAACAAACGCGTA
AGATACGATGACGCTTTCCTCTCTGACAAAACTGACGGAGAAGGGGAGCGCCTGGTGGTA
GTCTGACGAAACGGAAAGAAGAAACATCTGCAACTGTTAGCTGACAGATTGCAGCTTTTT
GCATTTTGCCGTCGCCAGTTAAAGCTTTTTATATCTCTGGTTGAAGCTTTTTTCATCACC
GGTTGCAGCTTCTGCAGTTGAGTGGTGGGTGGCCCTTGATTCCCGTCATCTCCGGTTGAA
GCTTTCGACAATGCCGGTTGTAGCATTTTCAATTGTGGGTTGCAGCTTTTAAATGTTGCT
CAGCGACCGACCCAATTTCTCGTCGCCGGTGGTAGCAAAAAACGACAGCAAATCTGTACA
TGGTTGTAGCAAAAAAGGTCGCTGGTGGTAGCTTCACCATAGCCGGTTGTAGCACCCATA
GTCTTGGTTCCAACAAAAAGTCGCGGGTGGTACCTCCACCATAGCCGCCGTTGTACCTTC
TCCACCATTGCTGGAAGCAGCACCGCAGCATGCACGAGATGGTTTTTAGCACTGAAGGTC
GCCGTTTCCCTGCCGTCAATGGAGACATCCAGCTTCCCAAGCCATCACCGTGTCCTCCTG
CAGTCCTGCTTTCAACAAACAGCTACGTTGGAGTTGCAGTGGGATGCACCATGGTCGAGA
CGTTCCCGTCAATGGTGCAGATGCGGGGGAGAAGAAGGGGGCACGGTGCGGCCGGCGCGC
TGTTTATAAACATTTCCCAAAAAGTTATTCTGTGAGAGGGATATGTTTGATGGTACTGAG
GCGTGAATGTTATGAAGTATGATACCTTTGCCCAAAGCATATCTATCTATTTCTGTTTTA
CCTCGAGTTTTTGTGTTACCGCTTGCTTCCAAAGTTCATTTGCGTCCGTCCCAGAAACTC
TCAAAGCTCTCTGGGGACAAGGAGCTCCAAGAATTTAGATACGGCATCCCTCCCTAAGAA
CTGCAAGGCATGTCTGCTTTTTTATCTACACATCGACGCGGATGCAGATAACAGGAACCA
ACAAAGAGTCATAATCCACATCCACTTACCCAACAAAAAAATGCGTCACTGTCTCCAAGC
TTATGCAAATACATCTGAACTGACTATTACTACATCAACATCACATAAACTTATCCGTGC
AATTCTTACTCTGCAACTAGTTCGACGACAATGCACGCTTACATTCGGTTCACAACACCG
AGTTGGAAGAGCTTTGGCTCATCCCTTTAATCTGAAGAAACATACATACAGGCTTGATAG
CAGTATCATGGTCACAACAACTCACTACTCACAAGTCACAAGAGCAGAGGCACCACACGC
CGTTGCTCCTGCCATGTGCCAACTGCACTGATCATGCTTCTTCTATACATACAACAGGAG
ACTACAGACAGATAGATGTGGAGGGGAGTCAGAAAGAGAGCAACAGATAAGCGCCGCGTC
GACGAACAACCTGAAGCAGCTGTGCACGTATGACCGATCACTCGGACACGATGCAACACA
CTCGCCGCACCGGCTTCTTCTGTTCGGGCGGCCGGTCTGGAGCGTCTAGCAAAACGTGCG
CGCGGACGCTATGATGTCAGTACTGAAGAGATCCGGTCAGTTCTCCGCACATTGTACTTG
TCGTACACCTTTTCATGGTTGTCGCTCCACCACGACTCCGCTTGATGTTCTGCGAATCTT
CTCCGACTGCAGGGGGAAAAACAGTCACAGGTCAAGTTACTCAACGACAGTTTCCAAGCC
ATGACATATCAGAACATGTGGTTATTCATTCAATGATGCAAAGGATTGTCTCTTATTACG
AAAAACGCCTACCTGAACCGCACCCTTTTCAGCTCTTTGGTTCCATCATGGAGAGAAACC
AATGTCAGGTACACCCCAGGTTCAAACTGTTCTATCCACTCAGACTCAACCTGATTACTG
GGTGAACCGGGGGAGCCTCTCGTGTTCCAGCCTTGAAGGTTTATCTGGAACCTTTCCGTT
TCCCGCCGGTCAAAATCCTCTGATCTCGGACGATACCCCGCCATCCCACTGTTCGTCCTC
TGGTGTGTGGCTGGAAAATCTCTGCTTTTGTTGAAGTGTTCGAACATGTTATCGTGTGGA
ACCACCGTGTTATCACCGGGTTTACCTATTTGATGGGCTTGGGGAGGGAGCCCGTTAGAC
CAAGCAGACGTGACAGAAGTCGGTGTTTGAGAATAATGAATGGATACTGGCTCATATCTC
TTCTGGCCTTCTCTTCCCATTTCAGGAGAAGCCACACCACCAGGTAGATACGCGAGCCGT
GGTGGCTTCACGTCGGAGTCTCCTGGAGGAAGCCTCTCGGCCATTTCTTTTACCTGTTGA
TGTTACTGAATAAGGTTATTCCTTGTACGGTCTCATAAAACCATCAACACAAAGTGGTGC
AAACAAGAGAAAATACAGCACAAGAACTTGCATCTGTTACCAACTGCAACATCAATAACA
TTGTGCAAATTAAGTTTGAAATATCACCTGCGCCGTTAGTGATTTTATAACCTCTTTTGC
AGCCTTCGATTTGGACGCCTCCTCAGCAGCAAGGGCCGCGGCCTCACTGGCTTTTGCCTC
CGACTTCTTCAACTCGGCGTCTTGCAGTTCACGTTGCTGTCTCAAGCTATTGACCTGATC
CATAGACAAGCATAAGGACACCCTTTTCTTCCCTGTTCTTTGTAGTTGTTACCAAAAAAA
GAGAAGAAGAACCAGGCATACCTCTTCTTTTAGTTTTTGAACCTCTTGCTTCAGAAGTTC
GTTCGCATCTCTGAAACTCTCAAGGTTTTCTGAAGACACGGAGCTCGGAGAACTTAGGTA
CGGCATTCTTAAAAATTGTGAAGTGTATCTGGGGTCATTCGGGTATCCGTTTGTTACTGT
AAAACCTGCATTGTGCAGGTCACCTGATCCGATGAACGGGATGTCGTTCATCTGCAAAAT
TGCAGGGAACTGCGGCGAATGGTCGGACCTTTTTGTCTGCTTTGCTGCCTTCACATCCAA
GCTCTTGATCATATCCGAACTGGTAGATGATGCCACTCTGTTTGCCTTTGTGTCCATCCT
CTCAGCCTTGGTGTCACCTGGTATGCGAGGTATGGTGTTCCTGCTATAACTGCTGACACC
AGAATCCATAACTTTACTTAGCTTCATGTGACATGAATCGCATACACGGTATGGCTTTCC
AGGGTTAGGAGACAAAGCTGCTCTTAGAGCCTTCTTTGAGCTGCATGAATGGCAGTGTAC
TAGGCCACAGTGGTAACAGTTGTGCCTCTTGCGAGTGAACCCGAATGGTTGTCTGCATGC
TGAGCACTGAGACTGCTCCATCCCAGACACCCATTTATGTTGACAAATTGCAGCTGTAAA
GCCTGATCCACAAGCAATGCGCTTTACAGACCTCTCCCTTAAAGCCTCAACAAGTGTAGG
TACTTTTCGATCTGCAATATCGCCATGACCCAGTCTTCCATTTGCACCCTTACCCCATGT
GTAAACTTCACCGGCATTTGTCAAAACTGCAACATGATAAGATCCACAAGCAACCTCCAC
AACACCACCACCACCGACCTTATCTTCAACAAGGCGTGCATACCTTCCATCATTATTGGG
ATTTCCAAGCTGTCCATACACAGAGCTCCCGACGGTAAACATGTGCCCTGAAGTTGTCAA
CCCAACAGTAAGAGTATGGCCACATGCCGACTTATGGAAGTTGTAGTCTATCAGTGAAGA
TACACAAGTTGGTTTGAGTTTTGAAGCCCTGTCGCCATGCCCAAGCCGATATTTGTCTCC
ATCTCCCCATGTAAATAGCTTACCAGATGAAGCATTTGACTGTGTCATGATAATCTCAAC
AACAGCAGCACTATGCCACACCCCACATGAAACAGAGATCGTCCTCAAACCCTTCAAAGA
CTCTACTTCCTTCGGGTATGAGATAGTTTCTCGATTCCCATGACCTAAGGCACCAAATGT
GCCATCTCCGAATGTGTACAACAGTCCAGAAGTAGTTATCAAAGCTGTATGCCATGTTCC
GCAAGAGACAGTCGACACCTGAAGGCCTTCCAGTGGACCTGACACCCTTTTGGGTATCCA
GTGACTCACAGTACTACCATGACCAAGGAGTCCCGCATTGTGGGTACCATCTCCCCAGGT
GTAAAGATCACCTGTTGCAGTAACAGCGCAAGTATGGAACTCGCCACAAGCCATTATTTC
AACGTTGCAGGTTGACAATGACTCGAGTAAACGTGGTTGAAAAATGCTTGTACCAGCCCC
GTGACCAAGCCGCCCACTGCACTCTTCTCCCCATGTAAATACCTCTGTCTGTCTTGTGAT
AAGTGCAGCATGCTTCACACCACAAGCCACATAACTGACATCAAGCATTACATTTGACTC
TAGGGGCTTTGGTACAAGGATATCAGTGGTTGCACCAGGGGAGAGTGCGTTTCCATCAGA
CCCTGATATTGAAGTGGTGTCACACATGACTTCTCCCCAGACATAAACATCCCCAAACGA
TTCAGAATCCTCGCCGCCAGAACCATGGCTGGATGTGCTGAGAGCACTGGAGACACTCAC
TCGAATGTCTGATGAGGATACACTTTTCACTTGCATATCTGACACATCTGTCCTTTCTGA
ATATGCATATTCTCCAGAAGAACGGTCCTTGGAATTTGCTGAGCTCAACTTGTTCTCAAG
AGAATCCGTGGTAAATGTAGAGCTACTGCTTAGGCTACTCTCTCTGCCACACTGAAACAG
AACATGGTAGAAAGTTCAGAAGGCCAGCATATCATATTGTAAAGGTCTGGTTCATCTATT
TTCTACAGGACTAGCAGCTGGACAACACACTTGAAATTAGATACAGAATGAGTCCACAGC
TCTGCACATCACACTAGATCAATTTTGATAATGGACTAGCATAAGTACAATTACGCTACT
AGCAGCCAAAAGAACATCAAACAAAAAGTGGCAATAGAACAAACAAGCACCATTGGGCAG
AATCGTCGGATTTTTACTTGTTGATGTTATGAGCTACTTTTGGACATTATTATATGCTAA
TTCTCCCATGTCATACTGCATATTAATATATGAACAGCATGTGGGACAGTGGGAATTTTG
TGCAACAGTGGTCCACATAAATATACCAGAGCATAAAAGGTTGATAATAGACCAATAGTC
AATCATGGAAAAGGAACTAGTTACAGTAGAACTGAATCTGATGCAAAAAAATATCTGATA
ATTTGGCTCGAAATGATATAAATCATCAGTCAAGCAATGGTAATTGATATACACAGTGCT
TAATAACGGGAAAAAATGTGCGTAAAAGTGAGCTATGTTGAAGCAGAGAATTTACATCAA
AAGAAAGGGCAGCACTGCGCATTTCGTCTGTGTGCTGGGGTTGGGATCTGTGCTTGCCTG
GAGATACCAATGCACTGAGGCATGTAAACCACACCTGTGTTTCAACCTTATCCTTGCAGA
TCTAGGAAACAAGACCAAAATTAGTTTGGTGATATTTATTCATAAATGGAAGAGAAAGAG
TAGGTCAGTTTGGTTTTCAGCGTAATACCAGATCGAGTGATCGCTTGCCATCTTTATATA
TGAGAGAGAAGGATAAATGGTCCTTCTCAGGGAGCAGAAAACGTTGGAAAACCAGCTGAA
AAAAAAAAAACAGATGTTGAGACAACAAAAAGACTTTGAAAGTAAAATATGGCCATATTG
TTCAGAATGCCTTACGGTTCTTTGTCCCGAGAGAACTCTGGACACAGAAGCTAGTTTTAA
ACTTTTCTCTTGGTTGCTTGAGACCCAAATAAGAGTTGATTCATCCTGTGGAGCATGGAG
AAGGAATCATTGAAGTACATATATATATAACAACCATGAACTATAGAATTTATGTTGTTT
TCAGTTCTAGTGTTACAATTTTTTCTAATGGTTGCCATTTCTTCAAGACATTCATGGTCT
TGTTCCGTGAACCATAACATGAAAAGAAGGCCATCAAAAACCACAAATTATCTAGTTCAG
GCCATAAAATTCAAAAATCACCCTCGAAAATTAATTTTGCCAGACCGAGATGGATGGAGG
GAGAGCAACATCTGTAGCAATGAGCTTACAGTTGACAGTCTGAAGGGAGTAAACTTTGGC
TTGCCTTTGCGGCCATACTTAAGCAGCTGGGTTCCTTTCTTCAAAGCGATAAGCGCCTGC
CAGAATCACAAGGATGAACAACAGAATTATTTAAGTAGAGTAAATGGTTCATAGCATAGC
ATGGGAGGAACATTAACAAAAGCACTTCCATGGGGCTTGAGAAAACTTGCTAGAGATGCA
TACTACTCCTACTTGGCAGTCCAAAGTTTGACAGGACCAATGCAATGGGAAAGTTCCATG
TGTAGTTTTGTCCATTTCCCTGGATACAAAACTAACAAATGGGAAATGCTTGTCTGTAGC
TCTGTTTTACTCACTGTATTTTTATATCTATCTATGTTGTCACATGGGGAAGCACTGCTA
CAGATAAAGACAATGCATAGCATGCTTTGCCACCCTCATGAACGAACCCAGTTACTTAGA
ATATATGTGTGTGCAGAAGGGGAGATAAGGTATAGCAAGAATCTTGTCGTGGCCAGCAGA
GCAGAGGTGTGGAACACAATCAGCCTACACAGTAGCCCTCTTCCAAGCTACTCCTAATCC
TATGTTTGTCATTACAGATGAACATGCGATGTAAAGCTGCTACATCTTAAGCTGTGAACC
CAGGATAGCAGATTTACACAAGCTGGATGTTTCAACTTCATCTGCATTCAGAATTTTAGC
CCAGGCTGAAGGAACTATTGTGATGACGCAAATAAATCTTATCCCGCATAAACGTGCCTG
AGAATGCAGTGGCTGAGCAAAATTTGCAGAGGCGGATGGGATGGATGGACCAATGGAATC
ACACTCCCTTGCTCCCAAGGCTCAAACCCGGCCTGAAATCCAAGGGATTTATGTAGCTGC
CCCGGCCGGGAAGGGGTCCCCAGCCCCAGATGCGAGCAGAGCCATGGCGATAACTGGAAG
CAGTGGCGGCGCCGCCCATACGACTCCGGCCCGGCCCCTCAACCTGAGTCATCGTTGGTA
TGGAACTAGTAGTCAAGTGTTCCGCCGGGGCTGGCTGCTGGCATTTCCAGAGTCAAGTGC
TCCTCCCCACCCTCCGACCGACATTGGCATTAACTTTGCAGGTACACACATAAAAGGGAG
AGAAGTGGAGAGGAGGGCGGCGGACCTTGTCGATGTCGACGATGGGATCTGCCATTCGAC
GGGCGGGCGGCGGGCGGTCGTCATGGAGCTGCTCCGACTCCGCGTCGGGCTCTCATGGGG
TCCTCCTCTCCTCGGTCGGTTCCCGCCGGCGGTGGGGGGCAATGGGGGCAGGTGGGCGGC
GGCGGCGGGAGGCGGGAGGGGGGGGGGGG