Map Locations of contig_41993 (7364 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_41993

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57689 3 1882 bp AK363414 Available Available None





CDS Structure of MLOC_57689






Contig Sequence (7364 bp)

>contig_41993 7364 assembly3_WGSMorex_rbca.fasta
AGCCTTTGGTTACTGGGTGTGCCCAATGGAAGATGGTAGCTCAGGGTATCTTCAACCGAT
ATGGATGGTGGCATACTGATAGGATAGGTAGATAGGTATCTAGGCCTATTGCTATCTCTG
AGATTGGCGTTCTGGTCGCCTTGTAAAGCCTTTTTCTTTTTATTTTCAGCTGCTTGAGAC
TATTCTGTACTTCTTCAGACTGTTTCCTTTTTAATAAAATGGCTGCATGCATCACTCNNN
NNNNNNNNNNNGGCGATGCCTCCTTTTCGAAAAAATCTACACATGAGCATTCATATGGCT
AAATTTTGAGATTCCTTCATCACACATCCGTTGAATTCTTGCTATGGCACAGCTTAATTG
ACTGGCTAATTGGTTATTGTAAAAATCATCATGTGGTAGCTTACATCCACATCACGACAT
GAAAAACAAGATATTATAACTTCCACGAAGAACTAGATTATATTTAAATAACACAAGAAT
ATAGCCCGTTGGCTGGTGACACTTAATGGCTGATTGTTCATTGGTTTCCTCCTCTCCTTT
TTCACACTTAATGGAGGATCAAGGATGTAATAGATGGGGGAAAACAGAATGGATCTGAAT
TGGTAATGCAACTAATGTTTTTCGGATTATTTGGAGCCTTAACTCGATAAGTCCACAATG
CTTGTATTATGGCGGCATTCTTTCTCTTTCTACCTACAGTTAATAATGCTTTGCTCAACA
GATTATGTATTTTCCATTTGTACTATTATTGTGGGAATTTCTGCTATTTTTGTCCCATTA
GATTAATGTAAGAATATCTAGGTATCTCCAAATTTTAGCTCTCACCACAATTTACTTATA
AATAGATGTGAACTATGTTCAGGTTTGCAGAACAGAAAATTCACTGTGAAATTGATAACT
CAAGATTGCAGGCTATTAGAGAACAAGCAAGTGCATAAAAGCAAGAGCGAAGATATTATT
ACCTTCTCTTTGCCTTCATCCACGATAACTTTAAAAGGATGCCATTCTGGATCTTTAATC
TCTTCCTCCCACTTTGAACAAAGAATGGAAGCAGTAACGCCTGCATCTTCTTTCGACATT
TTATTTTTGCAAGCAATCGCAAACGATTTCAAATCAAGATCACCCATTCTTTTAATTCCT
ATAATTCCTCGGCCATTTGTAAGTTCCCGCAAACCCTGCAGCGTATTCAATAGATAGTTC
TGAAATGTAATTCAAACATAATACGACAAGTGCAAGTACTCAATTAATGAGAAAACTTAC
ATCTATTAGCTTCTTCCGAGCATCTTGCAACTCATCATTGCTTATCCTTTCCTTCATAAG
CAGAGTATGGTGGAGTGATTCCATTGCATCCATTTCATCGTACTTGTCTTGAAGCTCAGC
ACTAAGTTCATCTATCTTCCTTTTTGATTCGGAGTCTTCCACACCTGGCATGTGCTTCAT
CACTTCCAATTTTCCCTGCATCTGTTTTATTTCTAACTCAAGCTTTTGCTTGGCATCCAG
TTTCTGCTCTAACTTGATAATCTCATTTAGAGCAGCTTGTTTCTCCCTCTGCAATTGTCA
TTTTCAGCACAGTAAGGCAGTCATATAAATTAGTATCTCAGAACCTCAAGTGAAACAATA
TATGAAGGACAAACCTTGTGTTTTTCCACAAGCTTCAGCACATTTTCATCCGCCCTCTGT
TGCTCCGATGTTGCCATCTTAAGATATTTTGCTTTCATCTCGTTCTGTATAAACCATAAC
AACCTGACATGAGTTTATGCAGAAACACTAGAGGGGTGTACCTAAAGCCGCCTACATTTT
GTACCTGGCACCACGCCCTCTATAAAAGTTATAAAAAAAAACAAGTTCCATGCATTTTGT
TGAAATTGTCCTAGTGTTAAACCTTCTGCGTTGTATTCTTGTCCGAGAGTGAAATGTCGC
ATTACAATTTACAACAAAAAATAGGAAAAAAAAATACAATGATAAGAATCTATTATTATC
AAAGCTACAGAAATCAAATGGTGAAGATTCATCAATTTAAGGTTGGAAATTTGCTCAATA
GAGATTCATCAACATCAACTAAAAAACAAAAACTAAGACATTCTACATACGAAACCTTAG
ACCAATTCCAGCTGACAACAGTGCTCGGTACAGAACTGTAAGATAAAACTTGGAAAGAAT
TTCTGTACATCTGAATCGGAATCCCACATGCGTACTCCTCTAAAGAATAAGAGCATGTAC
GCTTGAATCATTTTACGAATCCGAATAAGGATAAGTTATGCATGAATCTGAATAATATAA
GGTGTACTCCTCGCAAAAAATAAGAGCCCGTACGCTTGAATCAGCTTAGGAGTCCAATTA
GGAAACGGCATACATCTCAATTTATACTGCACATCAACTTCAGGCTACTACTCCTAAAAC
TTTGAGCAGAGTGCAGATGAATAGTATGTCAAACCGATCAAGTTATTGCAAAATAAAATC
ATGCATCTCAAAACTACACATAAAACACAAGAAAGCGGGCTACTACAGTACTACTCTTAC
AATTTTGTAGATGTTGTGCGAGGAAAGTGCAAAAAAAAAAAACTGACAGTAGATCTGGAC
CGAACTATAGAGAAATTACTTTCTGCAGATACAGTAGCGATAGTAGTACACACAACATTA
AAGAAAGGTTTACACCGTTTACGTATATGCAGCAAAATGATAGCAGCTTAGATTACTTGT
ATGAAAAAAAGAATATCTACACCACATATTTTGATGAGACATGATTAGATACTTCTAGGT
AGTAAAAAACGCTACACAGATTTTTTTTTATGGATGGCGGTCTAGATTAATTTATGCACT
AGAAGAAATTATCTACATATGGCATTTATTTTGGTAAAATCATACTGTAACAGTGTAGAT
TATTAGAAATTGTGTAAAATCTGATAGAGGAGCAACACAGGCCAGCAATATTAGATCTAA
GTACATGCATAGGGTGCATAGCTGTATAACCATGCATGCCTTTATGGATTGGCGGCCAAA
AGTTAACAGCAGCTAGAAGAGACGGATAATAGATTGAAGAAAGTCAAAAGTTTAAGTATG
TATAAGGACAACTACAAGACATGGATGCTATCAGGTAAGAACAACTGGTAGATCGATGCT
AGTGCATTGTGTGTACGAGCCGCAAGAACATATCGCATGTAGAATGCAAAACGGTGTCAT
TGTTGCCAAAGTAAATTCGAAGCAACAAATCATGTTTAGTAACATGTAGTTTCAGCCCTG
CTAAATAATACTCCCTCCATCCGAAAATACTTGTCGAAATGGATAAAAATGGAAGTATCT
AAAACAAAAATGCGTCTAGATACATCTATTTCTCCAACAAGTATTTCCGGACAGGGAGTA
TAAGCCGATGCAATATGAAATGTGTACAGCAGGAGAAAAAACTACCACGACAGCCGATAT
TGTAGCAATCTTGAATAGATATAGCCCAGATAATCGTATGCCTTTGGGTTGATCACATAA
AGAACTAGAGTAACATGAGAATGCATGGAAGCATCCGAAGGCGTGATATTTGCATTAGAT
CAAAAGACAACTAAAAAAACATAGCACAATGTTTTTATGTACTAGCAACCCACATTTAAA
ATTACTTGATGGTGGAGAATTGGGAAAAATATATTCTCAAAAAGATGGAGAACACGAGAT
AAACAAGAGTGGATGAGGTAAAATTATAGGTTAGTAAGAAAGCTTGTTGTTCTGTAATGC
TAACAGTCTTCCTTTGTCAAATAAAATACTCTGGCTAGTGACGACCATTATTTTCTATAT
TAAAAAGATAAACAAATGTTAAAAAATGTGGCATGAATTGAATCATGGATCGTTCATTCA
CAAATAGGAAGGAGAAGAAAATACCAATATAATGCTATGTAGCTATTCAGGCTAGTTACT
AGTGAATAGAAAGATGTTGTGTAAAGAAGCACAGAAACAATCAACCATCCTCCAAAACAA
ACAAAAGGAGAGGACCCATAAAACCAACTTGCATAATTCTTTATGGGAGACATTGGGCGC
ACACCTTTTCCTTCTCTTTCTCAAGGTTCCTTCTGTCCGAGTCACTACGCACAGCAAGTT
CATCAAGCTGCCTGGATTTTAATTCAAGATCCTGCATCTTGGACTCCAGTTCTGAACGGA
GCCTCTGATTCTCATTGATGATCATCTGAGAATGCTTACGAGCAAGTTGCTGCATCTTGT
GTATTTCTGGTGACAATGCAGGTTCAAAAGGCATTAAATAACTGAAAGGTCCCCATGCTC
AAAGGAGATAAATGCATATATATGTTATTATGGTATAAGAATACAAGATACAAAGAGCAA
AAGATGGAAACAAACCATCATTGTATCTCTGGAGGACCTGCTCCTTCTCTTCCATCACCT
TGTCAAGTGAGGTTGTCGTCTCATTGTACTTGCACTCAAGTTCTTGGACATGCTTGGCCT
TTACCTCAATTTGAATGGCTAAATTAGCTACCAGTTTGTCAGTTTTGCGTGTTCCTTCAT
TCTCAAGCTCTGCCACAGTTTTCAGATCACCATTTTTTTGTAGATGCTCCCCAATTGGCC
CCGGAGTTCTTTGATCATCAGCCCTTGCAACCCATCCATACATCTCCGACCCACGATACT
TGCGTGTCTCCCAGTCCCGTTTGCCATATCCTTCTGCCTCAAAGTGATTTTCAAACTTGA
ACGCATTACAGAAGCAAGCATAGTCTTTTCCAAACTCAACAATCGCATTTCCCGTGTGAC
CTCTATGATTCCACAAAGGAATCACCTTCTGTGGGCAAAAGCCCGAGAGCTGCTCCTTCA
AGCGGTTCCCACTTTCCCCAACCTGGCGGCCGCCTTTCCACTCGGTAGGCACATTGACCA
GCACACCCATCCAGGGCCAAACGAATTGCTCGTCTTTGTCCTGAACGGGACGGGGCACCA
CAGTCTTGAGCCGTGACGGCGGCGGCGGCTCGGACGACTCGGGCAGCTCATCCTTCACGC
GCTTGGCAGGGACGCGGTGGGTCATCCTGTCTCTCCCGTGCCGATGAGCATCTGAGCCTG
CTCCAGTTGAGTGACGATGAGCATCTGAGCCTGCTCCAGTTGCGTTACGAAGAGGTGGGC
TGTCTCTGCTCCGATAACCCCTTTCCTTGGGAATCCTACCAAAATCGGAAAAAGCAAAGG
CGGTAAATTGCAGCTGCCGTGTGCCTTGGTTTCGCGAAATCTCATGAGAAGAGACGGAGA
GAGGGGTTGGGCATGACTTACCGTTCAGGTGCGTCGCCGGGATCCATGGAGATGGAGGGC
CGTCCACCTGCCTGCTGACGGACGACGCCGCCACCAAAAACCTAGGGTTTTTAAGGCGCG
GCGAGGATCACTCCAATGTCGCTCGAAAGAAGGGGGAGGAGGAGTGGGTCCACGAATGAG
GAAGCGATTCGGAGGGCTTGGGCTCACCTTGCCTCGGCGGCGGCGTTGGCGGAGGCGAGT
TGCCGCCTAACTGTAGCTGTAGGGCGCTGTAGACGGGGCAGGGCAGCAGGAAGGAGGGGG
GAGGGGGGCAAAGCGGAGTAGGAGATGATTCAGATGATCACGTGATCGAGGAGGCGAAAG
GCCGAATGGGTGGCGAAGGGACTGCCGGATCCCGTCGACGTGTCGACATGTTATTAGCGT
AGTAGTACTACAGTACTTTTTTTTTAGGAACGTGCAGCAGGAGCTCCGCGTTACAAATGC
CACGTTTTTATGAACAAGCTGGAATACGTGGCAACGGAAAACACCAAAACAACGTGCACA
AACTACTTCCTACCCACTTGCTTGCTCTAATCAAGATCAAAATCTACAAATGAAATTAGA
GCGGATTTGTACAAGCAGTTCAAATCATATCCTATTTCGTACTCCCTCCGTAAAGAAATA
TACTAGTGACCTAAATGCTCTTTCTTTACAGAGGGAGTATTTATTATGTTGGATTTCGAC
TCGTGATGATAACCATTTTATGGATTCGGATACCATATTAAGTCAGACCGTATCAAATTT
GAATATGGCGCGTCAATGTATCAAAAACAAACATCTTGAATGTTAGGGCTAGATGTTTCT
CTAGTTTATCTTGCGCTTCCTTTGTTCATAAATATAAGTCATTTTAAAGATTTCACTACG
GAATAAATAAGAAACAGAATGGGTGAATTTATACTCTAAAGTACTATGTTTATATACATT
CATATGTATTCCATAGCGCAATTTCTTAAAGTCTTTTTTTATCACGTGGATTGCTAATTG
AAATGTTAGGGGACTTGGTGACACTCACAAATGCTCACCAGTCAAAGATGCGGTCTTGTC
ATGTCGATCGAGCATTATTTTCATGTGGGAAACTAAATTAGATGTGGTGGACACGATGAA
TGCAACATCTTTCCTCCCCCAAAATCAACGATCTTTCATCTTCATGCCGGTCGTGGCACT
TCAGGTGGACTGCTTGTGGCGTGGGATGACAATGTGGTGTGCATCTCTCAGACTATCAAG
CACAAATTCAGTATCTCTATATGCTTCCAATCCAAGAGTAACAGTGACAACTTTGTTCTT
TCCACTGTATATGTCCCATGTGAAGATGATGAGCGCTCAGAGTTCTTTCATGTGATGGAC
CAAGTTGCTGAGCAGATCGATGGACCTTGGATCATCCTCGGAGATTTCAACATGTACAGG
TTCGCCCAAGAGAAATCACAAGGAAGAATTGGACACTCATGGACAAATTCAACTCATGGA
TCATAGAGAATGCATTGGATGATATTGGTGTTGCGAACAGAAGTTTCACTTGGTCAATTA
ATAGGGAGGAGCCAACTCTGATCAAGCTCGATAGAGTGTTGGTTAATGTTGAATGGAGGC
TAGGGTTCCTCAACACCACAATTGTTGCCCTTTCGGCAACAACCTTCGATCATGCGCTGC
TTGGAGTCAATTTTTCCAAGGACACACCAAAGAGCTTGTTCTTCAGGTTTGCGAACCATT
GGGTGTAGCTACGAGAAGCTCGAGATTTGGTCACTAAAAGCTGGGGAAAAGCACGGGATT
ATTTTTCTCTGCATCGAGCTTGCTTAGCTTCAAGTTGAGAAGAGTGAGGGCTGCGATTAG
GAAATGGAACCGTGCCAGATCACCTATACATGATACTCTCGATAATTGCAAACATGTGGT
GCACTACTTGGATGTTGTAGAAGAGAGGAGGCATATCTGGTGCTAGAATTATCTCTGAGG
AAGCATGCAAACATGATAGCCCAACTATTATTGCATTTCTCCATATGTTGTTTTGGTAAT
TNATGACAATTCTTATGGACTAATGGTTACCTCGAGTTATATTCGAAGGATTTGTCCATA
GTCACTTCTTGAAGTACATTTGTTGGTTTCAAAGAGTTTATATG