| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_41950
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_57640 |
2 |
1968 bp |
MLOC_57640.2 |
Available |
Available |
LOC_Os05g48980.1, FRAME:+2, EVALUE:1e-142, 13105.m05233 protein ras-related protein, putative, expressed |
| MLOC_57641 |
3 |
3588 bp |
MLOC_57641.1 |
Available |
Available |
LOC_Os01g34630.1, FRAME:-2, EVALUE:4e-137, 13101.m03495 protein retrotransposon protein, putative, Ty1-copia subclass, expressed |
| MLOC_57642 |
5 |
2286 bp |
MLOC_57642.1 |
Available |
Available |
LOC_Os05g48970.1, FRAME:-3, EVALUE:2e-161, 13105.m05232 protein zinc finger, C3HC4 type domain containing protein, expressed |
CDS Structure of MLOC_57640
CDS Structure of MLOC_57641
CDS Structure of MLOC_57642
Contig Sequence (9371 bp)
>contig_41950 9371 assembly3_WGSMorex_rbca.fasta
TAACGATTCGCCCCTGTAATGGATCTGAGGGGTAGACATGTCTTTTGGACGATTTTGAGG
GGATGTCTTAAAACTCCCCAGCGTCATATATTTCGGGACGGAGGGAGTATTATTTTTGAA
CTCTTCCAACAAACAATTATCATCTAAACATTTTGTAAAACAAATATCAACACCTTATGT
ATATTTGAAGGACAAGAAAAATAAAAGGATGCAATTTAGAGAAGATGATAAACAAATAAT
GGAATGAGAAGAGACATCAAAATAAATTTTCAAGAAACACATTGAGAGTAGAGGGAGATG
GAAGGCATAAAGAAGGAATATTTGTTGGGTGGCCCAGCAATCGGAGCATGTGCGCAGATG
ACTTTTCTTTTCAAAGTAAGTGTATGTCCGTGGAGGATTATCCTTTTAGTCAACCATATT
TTTGGAAAATGTCACATTCAAATGACTAAATGTTGTTTTCAAACGGATCATGTGATCCTG
GGAGGAAAAAAAAACATTTCCATTAGGAATCCCATATGACGATGGGAACATTAGATCTCT
TCTTTAGCCATCTTTTCTTTGTGGGGTACTTCTTTAGCCATGTTGTGGGTTAGAAGGCAA
GATCAAGTTTTATTGACTGTTATTAACATTTTGAATGTTTTATTGACTGTTATTAACATT
TTGAATCAATAAATAATTCATAGACGGGGTTGACAAAAATATATTTAACATGATAATAAA
ATTTTCAGTAAATATTTTGTACTCCCTCCGTCTCGGTGTATAAGTCATCTTAGGTTGTTC
ATCACGACCAAGACGAAGAGGAAAACGAGAGTAATTAATATTAATTTGCTAAATAATATC
ATTGCATGCAATGAATTGACCACTCCATGTCGTGCTAGTTAGTCTCAAGTCATTAAAAAC
ATATACGGCCCACGCCTCCTATTAGTTGATTCTTTTATTCATGTAGAAAAACAAGAAACG
ATGTGAAAGTTAATGTATCACGCCTAAGTGTTTTGAGATTATTTGATTTTCATAAAATGA
CTTATACACCGAGACGGAGGGAGTACAATTGTTTTTAAATATGTTTCAAAGTCCATAAGG
ACCACAAAATGTTCTGGCAACTATTAGAACTTCTTAACAATTATAACAATTCCATACGAA
AAATTATCTAAAAACATGTCCCACCGTCTAACGATTCCTTTGACAGGAAAATAAATGCTC
CATACATGAAAAAGTTGCTGAAATATGTGTTCAAGCCACACTAACAGCACAACTGCGAAA
GGATCATCACAAAAGATAGCTACTTCAGCTAAAAATAAATCAATACTGCAGGGAGTCACA
CACCACCAAACCAAATCATCGCAGAATAGGGAAAAAAAAAGACCACGCCACCAATGATAC
ATATAAGCAGTTATGAGTTTTAAACATCTTCCGTAAGCACAGAAACAATCAGAGTACCAA
TTGAAGACCAATGCAATTGACAGCTTGCACAGTAATGACCACAAATTAGTTCAGACAATT
GCTGATGCTCTGCGAGACTGCAACAAACAGAGTAACCTAGTTCAGATAAAAGAGACCACC
ATGTCAAAGATACAGAGAAGTGATGCATTTTAAGATTTTTCGTAGGCACAGCAACAACTA
CGGTACCAGTTGGAAACCGACGCAGTTAACAGCTTGCATAGTAACCACAACAATTGCTTC
AGACACCACGACAGTTAACAAAGTAACCTAGTTCAGATAAATACTACTAGTAATGCATTT
CATGGGTTCCACTGAACTGAACACCACGCCAACCACCATACATACCACGGTCAGATAGAT
AACAAGTGAGCAGCTTGCAAAATAACCATCGAACAACATCGCCGCTTCAGTCCTGAGGGA
AGAGCCATGCTGCCAGACGCATTTCATCGCCACGCTTCCAGGAAATGTTTGGATGAACAG
AACGGATCCTGCCGGATCTCATGTCATAGGTGCCGTAGGAAGTGTTCTCCTCGTCATATC
TATACTCCATACGATTCTCCTCATCATCATCCAAGAACAAGATGTGATCATCCGGGACCC
CGTACTGAGACAAGGACAAAACCCTGGAGCACCTTCGCCCTAGAAACATCAAACCCCCCA
AAGCCGACACCTTGACCCACCGTGAATGCTCAAAGTCAGCCTTAAAAACCTCAAAGCTGT
TCTCTCGAGCAACAACTTCACCGCGCACTCCAGGTTCAGGTACCTGGCACCAAACTGCCC
TCCGTACCATCAGCAACGCCCCCTGCCATTCAACCAGGTAGAGCTTCTTGCAAGGCATAG
TGTTGTCCTCGAACACAACTGGATACCATGGCTCACCCTCGATGACTTGTCCAATCCGAG
AGACCTGCGGATCGCCGGTGCTTTGGTCCTCGCTGATGTTCACCACAAGAAGGTTCTCGT
TATTGATAATGGCGTAGAGCTTGCCCTGGTAAAATGACATGTCTTCGAACCTCCTGCACG
GATCATACGCGCGTACTGACCACGACAAGGCCCCTGGCTGGCACATTAGAATCTGACTGG
CGTATCCGATGCCGACTAGTGCAGCAACGAGATTTGGCGAGCACAGGATTAGCTTACTTA
TGTGCAGCTTCTCAGATGTATTGATATGCATCCATGTAGTGTAAGGGTCTGCATACTTCA
GCGTGCCTTCCTCTGACCATTTAGCGACTGCATTTGGAGGCCGAAGCCGTACGCTGGAGA
GAGCAGGGAGCGTGACGGTGGCCCTGGAGAAAGGGTCAGCCAGGAAGCATCCGTCATCCC
GGGGGAATACGAGCCAGCTGCCACAGGCACTCTGATACCCAGCAAAGCCGCAGCCAGGGA
AGCGGAAGGGCTTGTAATACGGTAGGCTGTAGAAGGTGCCGTCCGGCAGCGCGAGCAGTG
GCAGTGGTGCGGGAAGCTGCTGCTGCCGCCTCACGGCGGCCCGCTACTGTGGGCGCACCA
CGGCGAAGCGGGCGCGGTCGGCATACGTGGGGAGCAGGCCGAGCACCCGGCCTGGCAGGT
CGAGCGGGATGGACGACCACGACAGCGCCGGCTGCAGGGAGTGCGGTTTCTTCCCCGCTG
ACATCGGCCCTGCAGGCGCAAAGAAACAACGTCATCGGCGAGACAGCGGCCACTGCCCTT
TCATCGAACACCAAGCATCCAACCAAACACAAGGAGAAGGATCACGGCACAGCAGCCAGC
GGCGAAGCGTGAAGCAAGATAATTTGGGCTTTTGAAAGGGGTGGCCACAGCCCCTAATTG
TCCCCCACAAGGCTCCGCCAGTGACAGCAGCAGCACTTTGGTTGCGCAGAGGCAATGCGT
CGAACGCCTGGCGCGCACGGCCGGCGAACGCAGACGCGGCGAGAGCTGTGACGGACGGAA
CCCCAGACGGCCAGACCTACACCCCGCGCGAGCAAGATACAAGTAGAGAGAGCAGAGGCG
TCCCTTGGCCGGAGCGGGCGTCGATCTACCGTGTCCGTAAGCGCCGCATGGCCAGAGGCA
CGGCGGGCGGGCGCGGGGAGGAACACCCAAGCCCTCCGAGCGAACGGGAGAGGAATGCGG
AAGAGGCGCGAGGATGAGGGGGAGTGAGATACCTGAGAGAGAGAGAGAGAGAGAGAGAGA
GCAGCGCCGTCGTCTCGGTGCCGGAGCTGGGGTAGACTCGCCGCTCCAGCTGCCGCTGCT
GTCAGTGGAGTGTGGGATTGCTGGCTGCCCGAGTGAAGTGAACCAGGTGAGTGCAGTGCA
GCCCAGGCCCAGCCAGTCCGAACGGGCTGGGCCGCCCGGTCGCTCGGGGCCTGCATTTCC
CATTCCCTGGGCCCACCCACGTCCGACTAGCGGAGCGGAACCCCCCTCAACAACCACGGC
CGCCATAGCGATACGATCTATCCAGCCAACAGGAAGCAGCGGCAGCGAGGAGGGAGGAGA
AGCCGAGGCCGCCCGCCGCCGACGAGGAAGAAGAAGGCGGCCGGAGGGGAGGGGAGGGGA
GAGGGAGATGGCGTACAGGGCGGAGGACGACTACGACTACCTGTTCAAGGTGGTGCTGAT
CGGGGACTCCGGGGTGGGCAAGTCCAACCTGCTCACCCGCTTCACCCGCAACGAGTTCAG
CCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGA
CAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGAGGTACCCATCCCCCCA
GATCCATTCATCGTTACAGCAGCCCGTGTGGCATGTGGATCTCATCACCCCTTCTTGTCG
GCGATCCTTCAGCATACGCTGCTGTGTTTGATTGAAATGCTTCACTGGATGCTGAGATTA
GATTTGGCATTGTCTCGATCCATACGTAGTAGCTTTCCATGATTGGGCATCACATTTGTA
GCAATGTGCTGCTACTTGCAGTTGTTGAGGATTGTGTAGGGTCCAGGAGCTGACCCTGAT
GTAGACTGTACATGCACCCCAGCTGTTCGAGCATATATGGGGTTTGGGAAAACATGCTTG
CTAGTAATTGACGAGGAAACATCTTGTAGCCATCAATTACAACTCCTGTGCTCAACAATT
TGTAATCATCAATTAGACAATGAGAGCGACTAATTTAATTGCCCGTGTTCAATGAGAGCG
ACCATACATGCTCATTAATTTGCTGTTCAAACTGTTACCTGCACCACCGGCTGATCATCG
ATTTGCGCTGCGCCTGCAGGTACCGGGCGATCACGAGCGCGTACTACCGCGGGGCGGTCG
GCGCCCTGGTCGTCTACGACGTCACGAGGCACGTCACATTCGAGAACGTCGAGAGGTGGC
TGAGGGAGCTCAAGGACCACACGGACGCCAACATCGTGATCATGCTCGTGGGGAACAAGG
CGGACCTGCGCCACCTCAGGGCCGTCCCTTCCGAGGACGCCAAGGCGTTCGCCGAGAGGG
AGAACACCTTCTTCATGGAGACGTCCGCCCTGGAGGCCATGAACGTCGAGGACGCCTTCA
CCGAGGTGCTCTCCCAGATCTACCACGTGGTGAGCAAGAAGGCCCTCGACATCGGCGACG
ACCCCGCCGCGCCTCCCAAGGGCAAGACCATCAGCGTCGGCTCCAAGGACGACGTGTCCG
CGGTGAAGAAATCCACCTGCTGCTCGTCTTAGCTTAAGCTCAGGATGGTGGCATCTTATA
CAGTAGGGGGGAGGGCACTATGTTATTGCAGTCATAGTCCTCATTTGTATTCATGCGCTA
TCGAGTGTCTCAATGTTCATTTTGCCATATTTTTCATACATTTGATTCGTTCACGACTAC
AGCTTTTGCTGGTATAGTTTAGGGGTTTGGAAGTGTGAGGTTATCGTGAATTTCTTATAG
GCCTTTTCCTTGGATGTGTTTCTACCTCTTGGGTCTGTGTATTCCTGAATCTGCTTATTT
ATACAATTCCATTTCGTTCAGGGGATTTGTCATGGTAAACTGTTACTGTACCAAATTTTT
TGGCGACTCCCATCATGAAAATTACAGTTAAAAGCCAAAAACCATTGCTACACTATATGT
TCTGCAAAAATTGAGCTTTTAGAGTTTGGTTTATACAAAACAAATGGTATGTTTTTTGTG
ATTTTGACTTATACCATCATGTAACAATAACCAGTTAAAAGCCAAACAATTCAAAAAAAA
TCCAGTTAAAAGCCAAAAACCAAAGCTATAAAGGCATAAAATAGATGTTTTTTTCTGGTT
ATAAACCAAACTCCAAAAGCAACCAAAACACCCCTATACCATAGAAACCAAAACTGCAGA
ACCAAGAAAGCCATAGAGCATCCAGAAGAAAGAACCATTTGAGTTTTCAATTCTGATTTT
TGAAAGGGAAATATATAGGTTTAATTACAATGTACAAATGGATAAAAGGGGCAATCTAGG
AAAGCCATGATGAGAGAAGTTCAGGCACCATGGGGGGGGGTCTAAGAGCAGTCTAGGAAA
CGAAACCATGCATTCTGGCTATACAGTTTTGGGGCAGGCTATGTCCGCAACAAACCGAAC
AGGAAATTACAGGTAAATAACACAATCATCCAACATCTCTTATGTACAACGAACTGAGCT
GAATCTCAGTCGCGGCAAATGATTTATTGGCGCCGGTCACCCCCGCTTCTCTCTGCTGGC
AATGCTGCTGCCTTGCAGATGGGGCACAAGTTCTTCATCATCAGCCACTGCCTGATGCAC
GCGGCATGGTACTTGTGGCCACAGTCGAGGGTCCCTACGACTTCTTCTGCCTCATACTCC
TCCTGCAAAGACACGGAGCAAACCCACTTTAGAAACCAGAGAAAGGTATGGGCAGCAAAA
CTGTATATCTGGTTAATCTAGCCGTCGATAGTGACAAAGGGGTGTATTGACTATTCTAGG
TAAATGAGCTGCTTCTAAAAAGGATAAGGAGCTATAATATTATTACTATGTAAATATTGT
CAGGTTAATTGTTTAGTACCAAACTTAGATATTAAGATCCAGTGGTGTTTAATTTTTTAA
AAAATCCAGTGGTGTTATTAACAAAAGAGATCAAGTGAAAATACCTGGCATATAATGCAA
GCGTCCTTCTCCACAGACTGATCAGACCCGCGAGCTGCCCCGGGAACAACATACGGATCT
ACCCTCAGATTTTGACGGATGTGCCTTTCTGGCAAACCGGTATTGACATCTCCAATCTGT
TCTTGCAATGCTAGAAGCTCCTGCAGGAGAGCAGGACCGCATTTTATCAGTTTTACATAC
ATGCAAACCCGCAAAAGTGTCTGTGAGAAACTCACAATCTAGTGAGTTGGTCATTTGCTC
CATACCTCATACGTCATGCTGTCTATATCTAGCCCCATATCCCACTGTTCATCAATAAGA
TGTATTGCATCATAAAATGTTGACATAGTCGCCATAGCAGCTTGCTGTATGGACAGATTG
ATTACATCAGATATCCATATTCAAAAGGAAATCACTCATAAAAGTAAGCCCAGTCATATT
AGTGAGGTATGGAGCAAATTTTAATGTCTGTAGATACTAATAGAGGCAGTAGGCAAGCAA
GACAACAGAAACATGATAATCACGTATCACAGCAATGGAAAGTATGGTTTCATTTGTCTT
GGCCAAAATTGGGGCATGCTATTCATGCAACACAGATTGCAGGGGGAAAACATATGGTAA
AGGGCTCATAAAAAATGTTTGGATAATTTGATTTTCTAAAACTTGATGACAGGCATATTT
TGAAGATTTCAAGCAAAATAAATGTGCAGCACTTCAGCAACTAAGCGCAATAATTGGCAA
TGTTTTCTTGAAAAAAATATCCACAGATCTTTTATGACTAAATTCTTACATCAATTGATT
ACTCTTCTAAAATGAAATTGTGTTTCCGGCATAAGTATGAAGCATGCATATCCTTGCAGA
ATAAAGGATTCAAGTCCAAATTATACATGCATCTTCTATGCCTCACAAGAAACACCAGGT
AGACGCAAACAAATTATCTAAGATATTATTTTTTCAGCATTTATCATGCAATTAGAGCTA
CATGCATGCTATCATTCCATAAGAAAAATGTATGGAAATGTGAATCACCTGAAGAAATCT
TATACTCCCATGGTAAACTTGATCTGTCAAAAATGCATGAACTGGAGGTCCATTAGTATG
TCCAGAACTGGAGAAAGGCAGACATGGATCCCAGGTGAACACCATTCGAGAAGGATTTGC
ACCTTGCACCATTCCAGAAGGATTTGCACCCTGCACCATTCCAGAAGGATTTGCACCTTG
CACTACATTGCTCTGACGCTGAGGCCCTTGCATCTGAATATGATTAAGCATAGCAGGAGT
TTGCGTGCTATGCACAGGAATCTGGTTGAAATGAGGTAAAGACCCATGAAAAGTAGCAGA
AGGGCCAGCTTGATAATCTTGAAGACGACCATTTGGCATGCCCATTGTTCCTGGATGAGC
AAACTGACCTGTTAAGAAGCAAGATTTTCGGTTATCTCTCCACATCTCACTTCACAGAAT
TATATCCTATAGCCAAGCCATAACTTATAAAAGGTTGCAGTTATTCTAACTAATGAAACC
TACCAAGAATATAAGCCACTAATTATTCAATGAAAACTACTGACAGCCATAAAAAAGTGC
CTTGAATCATCACTTAGCAAAACAATTTCATTTTTATTAATCAAGAAGGTTTACTTACCT
GAAGGATTGTGGACTGAATTGTTGTATGCCCAGTGTGGCACTCCATCAGCAATAACATTT
ACAGGCTGTGTATTCCATGTATTGCCCTGGCCCATGTGACCAGCTGGAAATACATAGTTA
CCATGACGCACCAATGCTGGGTGAGTAGCCATTTGTGTTGACCTGTTCGGTCCATCAGCA
GAAGAGCCATTTGGTGCACCATGTGATTCAAATGAAGGACCCCATGTCCCTTGTGCAGGA
TGCTGAGGCACATGAGCAGATGAACTCGAGCTTGCAAATCCATGATCAAAATGATGGCCA
CTCTCAGCTACCGCATTCTTCGTTTTCATGGATTCTCTGGTGGCATCACCAAAACTGCTA
CTGCTGCTACTCTCGTCCATAGTTCCTGTGGCAACTTGATGATATGAAGGTGAGGGTGGC
GGATTGCCCTGTCCAAAACTTGCATGAGGGACATATCTGTTCGCAGATGGTGTTGGCATG
CCGGGATTGTACATATTCGATGGGTAGACAAAACTCGGATCAACGCCTGCATATGGGTAT
AAATTCTGAGCATGCTGGCGGTGATTATTAATGCTCTCATAGTAACTCCGTGAATCACGG
ACTCCATCATTAGCAGTATTTCCTGGAACACCAAGAGCAACTTGCACGCCCTGATTGGAT
AAATTACTGCCAGTGCCACCATTATTGGAATTTTCAGGCTGAAGTTGTCCTTCCTCTGTT
TCAGGATTAGCACCCTGATGTGTCCAAGACATATTTCTCTGTGACATGATGCCAACCACA
ATTCCCTTGCTTATGGATCAACAATGCTTTTTCATTAACTCTTGCTGCAAATCAGATTAA
CTAAATATGGTCAGCAGTCAGTCCAAACTCTGTAAGTAGACATGCAAAATGCAAGGAAAG
CATGTTTTTTTAAGTAGTCGTGGTACAGGACAAAAACTTTCACAGAGATATGTCAATGAT
TGATAATGCAAGGCATGAAATGACCTATCCTCCAGCCAACATACTGATTGAACAAAATAG
CTTACACATTCTGGACAAATTAGGTGGACCAACAAGAAATAAAAGGTATTGATCATGTAC
AAACAAAATAGCTCATGCCTTAACTTACTAGAGTTGCAGAGTTACCAATCAGCATACATA
TTTGTCCAGTTTCGCTCTCCTAAAGATGCCAAATCACAATTTCATATATTACTACTCCCT
CCGTTCCTAAA
