| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_41943
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_57634 |
2 |
1832 bp |
MLOC_57634.1 |
Available |
Available |
LOC_Os10g27190.1, FRAME:-3, EVALUE:6e-70, 13110.m02328 protein 40S ribosomal protein S17, putative, expressed |
| MLOC_57635 |
2 |
4776 bp |
None |
Available |
Available |
LOC_Os04g34810.1, FRAME:-2, EVALUE:4e-71, 13104.m03382 protein transposon protein, putative, Pong sub-class |
CDS Structure of MLOC_57634
CDS Structure of MLOC_57635
Contig Sequence (10542 bp)
>contig_41943 10542 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGAGTGTACCGCAAGGCGGAGCGTGTCACGCCATGTCGACTCTGA
TGCAAGGCGGCGTGTCACGCCATGTCGACTATGACGCAACACTTTTGCTCGGGGTCATCA
TCGTCGTGCCGGCCGGAATTCCGAATCCGGCGAATCAACGGATTTAAGGCGCCTGCTCAG
CCAATGGAGAGTACCGCGGAGCTGAGCGATTTGTGAACCATATCAACATCCTTAACCCAT
AAATATAACACAAGTGGGGAGGGCAAGTAGTACATAGGGTCTGATCTGGCAAAAAAACCT
CCCAAACCAAATTTACTGTTAGGAGACTTTTACAGTATCTGTTGAACCCGATGCTGAAAC
AACATGTCATCCACCATGCTCTACTCAACACACGTTATTGAAGGCTGGGTTGAGCTATCG
TGCAAAATCGAGGAAATACTGTCGTCTTTTAACCGAGATCCACGCTTTTGGCCTCTCTAC
TCAACACACATTATTGAAGGCTGGGTTGAGCTATCGTGCAAAATCGAGGAAATACTGCCT
TTAAACGAGGTCCACTCTTTTGGCCCAAACAGATTATTCAATGAGCAATGCTGCATACAC
GACAGTGGTCTCACGAAATACAGACGGCATGCCATGTCCCACCATCCAAGCGCAAGATTA
AACATCAGGTAGTTGGATTCTCTATCGTTTTGTTCACAACCAATCGAGATGTCCTAAACT
GTGGTTGGTAAGACACAATATGTCGTATCAAAACAGGATTCAAATGATGAAAACTCAGAT
GTATTTCAATCATATACGTCTAAGACGAGCAGAAGACCAACAAGAGCGCATCATACAGCT
CCCTAATATTCAACAATCTTTCGACCAGAACAGAGACAAAGGTCAACCCCTGTATTCAGG
TGCAACCAATGAACCTATTCAACATATTCAGTGAAGCCAAAAAAAACATAACAACGTAGT
ACAAATATCACCGGTTTAAACTCAATGAACTGCAGATATTCAACAAAAACAAACAAGAGC
ACAAGATAACCAAGCAAACCCATCAAAAGCAGGGCCGGCCATTCAACACAGATTTTTTTC
AAAGGAAATTAAAAAGAAAACCAATCAATATTCACCTGGCTGGAACCTAAACAACCTAAA
TAGCAGAATCAGCATCTGCTTGCATTGCAGAACAGAAGTAGACCAAATCACACCAATAAT
AACAGCAGGACTGGGTCCTTGGGTACACAGATTCCAATGGGAGAACATAATAAACCAGCC
CAATATTAGTTCAAGCAACGATGTTGTTGCATTGCAAAGGACAAGTAGACCAAAGCACCC
CAATTACTCACAGAGCAGGACTGCGTCCTTGGGTACTCAGGTTCCAGTGGGAGAACAGAA
CAAACTTGTCCAATATTAGCCCATCTGGTTGCAATGCGGAGCATAACTAGACCAAAGCAC
CCGATTACTCACAGAGCAGGTCAGGGTCCTTGGGTACTCATGTTGCAGCGAAAGAACATA
ATACAGTAGTCAAAGATCAGCAACCCCAAGTGTGGTATACAATGACCAGACTTGGTTTAC
GGTTGCCTTTTCAACAAAGAAAAAGGGAACTAGTTCGATCCTGTGAACTCCCTAAACTGA
AAGACACTATCGTAATTAAATATCAGAGCAAAGACACAAGTAACAAACCAAAACACAACT
AATGTTGGCAACCCACTGGTGCTGACAAAAAATAAGAACAATTGAACAACACACTAGACC
CATAACAAACCTATAAGGCATGTCCCACTACTGAACGTTATAGCTAGGTTATGACAGGAC
ATCGGCCTACATAGAGAAATTCATTGCATAGGTGTTGTATCAACATGACAATGCATACAT
ATATAATTATAAATAGACAGCTCACGAATCAATCGATCATCGAGCAACAATAGCAAAGAT
ATCACATAAACTTCAAAGCTCAACAGCAATATATCGAATCACTTCAGATTAACGGTTGGA
TAAACAGATCATGTCCACCATACGCAGATCAAAACACCTCGAACTTAAGAGCTGAGTTCA
AAATAGTACTTGCCACAAGTAACAGATCTAATAAAAACTTATAAAGCATGATAGGGGTAC
GGCGACGATGCGGGGGAACCTAGGCGCGGTTGCCACCGCGGGGTCCGTTGTACGGCTGGC
GGAAGGGGGCGGCGGACGCGGTGACCTCGGGAGCGCGCTCGACGCCAGGGAGATCGGCCA
TGCCGAGGAACGCCAGCATGTCCATCGTCTCCTTGTCGACGCGGATCTCGTCGACCTCAA
GAGCCGACTTCTCAGGGACGAAGTCCATGCGGCGCTCGCGCTCCTCCTCCTGCAGCTTGA
GGGAGATGCCGCGGACGGGGCCGCGCTGGATGCGGCGCATCAGATGGGTGGTGAAGCCGG
CCACCTTGTTGCGGAGGCGCTTCGACTGCAAGATGGACACCTCCTCGAGCACCTTCTTGT
TGGTGTGGAAGTCGAGGGTCATCCGAGAATAGTACTTCTCGATGACCTGTCGGGAGGTCT
TCTTCACGGTCTTGGTGCGGACGCGACCCATGGCTGCGGCGGCTCCCTCTCCTTCTCCGG
CGGCGGCGGCGGCGGCTCGGCGCTTGTTGGTGCGGGGTGCGGCGGCGCGTGGGCTGGAGG
GGTAGGGTTTGGGGGCGACTTGAACTTTTATAATGGTACCGGCCGCGTGCGTAGCTAGGG
TTTGGGCGTGGGGGACGGATGCCAGCCGTTCGTATTGCGATGGGCGCACGAGATCGAAAT
TACCTTTGTTGGGCCTCACGTTGTTCGGAAGGTCTCTTCTTTACTCATTTCGGTTGGTTT
AGGCCCAGTAGAATAAAACTGGACTGGAATCTTAATCAGTACTTCTTATTTCCCTTTGCC
ACACCTCAAAAAAAATTTCCCTTTGCCTAGGGCTGCAAACGAGACTAGGCTCAGCAAACT
TGTACCAAAATATATTACTTTCGATATACTAACAAAAGGGCCCGTGCGTTGCAATGGGAC
AAAGAAATGCGTGGTCATTTTTAAATCATTAAATATTTTATGAATGAAAAATTATTTTAT
AAGTCACAAACCCTTTTTTTGAACTTTTAGATATTTTTCCATTCATGATCATTTTTAGAA
TTGACAAAAATTTGAACAATTTCATTATAAAAAGTACTTCATGAACTTTTAAAAAATCAT
GAACATTGTTTGATTTCTCGAATATTTGTTTTCAAAATTTTAAACATTTTCTGCAAGATC
GCAAGTATTTTTGAATCCACAAATATTTTATAATTTATTAAACATTCTATTTCAAAATTC
CCACTTTCTTAAATTTTCNAAATTTTTGTGAAGCCCCAAATTATTTAAAGTAGAAACAAA
ATCCCGTAGAAAAAATTCCCTAGGAGTCGCACACGGTGAAGTACTTGGTGAGCCCGTATG
CGTCCTAGTATGGCAGGGCCGTCGTAGCGCAAACAAACCAAAATAAAAGACACGACTGGC
CCGCGGGGCCCATGGTCTGTGGCCACCACCTGACCACCGGGCCCCACAACCGTCGCACAC
CGGCTGACCGACGAGCTCGGCAAGGGATGGCCCTCTCGTGCCACTGCCACTTTCCCCGAG
AGCAGATCGGCTTCCGCTCCCCCGAGCTAATCCCAACCTCCCTCCCTACGCTATGCGCAC
CCAGAACCCTCCTCCCCGCAGTCGCTGACAGCCATGGCCCACCGCGCCCCCGCCGCGCTG
CTCCTCCTACTCTTCCTGCTCGTCGTCGTCGTCGCGTCGGGAGAGAAGGGGGCGGGGTCG
TCGTTGGCGGTGGCCGACGAGCAGGAAACGGGGGAGGAGGGGATGCCAGCTCGCGCGGCT
GGAGGAGGTCGCAGAGTCACTCGCCAGGTCCATGCGTGCGCTGGAGGCTGCGCTCGCGAG
CGCCTGAACAGGAGGGGATCCCGATCCAGAGCCGCTGCCCGTTGATCTCGCGCCTCCCAG
CGAGCCGAGTTTCCGCGCCCATGTTGGTCACCGACCGGCCGCCGAATCCCCGCACCGACG
ACCAGGTCCCCTGTTCCTTCTTCTTCCTCCTCTCCTCTCTTCTTCTCTCTAATCCCTCTC
TGCCTCCCATTCTGCACGCGCCATGGAGCTCCGTCAGCATCCCGATCTCACCTCTGCTTC
ATTCCAGCAGGGAACGAATGGATCCGGGGTGCCTCGTGCCAGATCCGGCCTCGTTCCTTC
GCTGCATGCCCCTGGCATCGCCCCGCCGGCGTTGTGTACCGCCGTCCTGGCCATGCCTCG
CTCGGGAGGTTGGTGACGACCCACCCCTCGAAGCTTCCCGTGGGCAGCGATGCCTTGCGG
CCTCGCCAACGTGGGCAGCGCCAGCTCCCTGCCATGGCCACCCCTGTAAAAAGGATCGCG
GATTGGATACTTAAAAATACAAGGTATTTTTATAAAAAATGAAACGTTTTCTCCTCGATA
CACTTAAAACTGTAGTGCGGGTTGAATAACAAAAATGACAGAGACTTTTTTATAAAAAGA
CCGCGACGGGCGAAAAATTGAGCAAGCAAGTATTGGCTCGAAATCAGTTCGTTTCTTCAG
CTAAATTCGTAGTAGGCCTTCTCTTACCAACGCTTCTTATTTCCCTTTACCTAAGGACTG
CAAATGCATTTCCAATTTGGTGTCTCTAGTGTTGTTTACTTTCTTACTCACACAGGCCGC
ACACATCCCTTCACTATGTTTTTAAGCGGGTCGACCCATACTAGCATCTCGTATTGCATC
GGTTTTGGAAACATTCTAGGATCCCATCAACTTTTTCGGGTTGGTTTCTTTTGGTTTGTT
CACGACCAATTTTTTCTTGGATTTGTTAGTTTTCCCCTTTTCGTTTAGTTTTCCTTTTTT
TTTACTTTTTCCGAACTCGTGGACATTTTTAAAACTCGTAAGTCTGTAAAAAAATATGAA
ATGTTTTTGAATAAAAATTCTCAAATTTGTGGACTTTTAATTTTTTATAAAATATTTAAA
ATTTACATAGTTTTAAAATTCAGGTAATTTTTCAAATTTCATGACTTTTTAAAAAAAATG
AACCTTGCAAATAAACATGAGGTTTTCCAAAAGTCAATGGCGTGCGTTCAATGGTCATAG
GTCAATTGTTGGCAGCCAATGGTCGGTGTTTAAAGTATCTTTGTTAAATTATCTTGTGGG
TCGTGACCCATCTACTACACGGGTGACACCATGGCCACCTACTACACGGGTGACACCATC
GCACGGCGTAGGAGGTCTCGCAAACGAATCGGAGTCCAACGAGTGTGAATGGATGCAATG
TGGAACGTGGAACAAGAATAGATTTACTCGCTCCAACGTTGTCATGCAAACTAACTTATG
CATGGGACCGTAACACCTTCTTTTTCCATGATGCGTCAACAGCCACAAAGAAAAGAAATC
AGATTAAAAAACTTTTGGATGATTATGGTGTGTGGGTGCAAGACACGGAATTGAAGGACC
CCATTATAGTATCTCCAATACGCACACAACTTTGCGGCGCGCTAAATTATTTTTACAACA
CCGAAATTGTATTTTTTAGCGCGTAGAAGGGTGCTTACTTCAGCACATGCTGCAAAATAT
GGTGTGACGCTATAGCTCCAGCAGACGCGCTAAATTTACAACATGCACGCCTAGCACAAA
CAATATATGTCACTCAAAATAGAACCAAAAAGATCAAACACACAACAAATAAATCAACAA
TAAATAGTTCAATTATTATTGCAACTCAAACAAATAGTTTATCTTCCAATACAACAAATA
GTTCAACAATATAACATCAAACATACAACAACAAACTGATTTTGTCGCATGTGCATGCCC
ATCACTCCTCGATTAGATCCTTTTAAAGATCATCATGTGTTTCGGCACATCGGATGGCAT
GATAGGACGCAACAAATCGGACCATCCTCGTAGCCCTTCTCCGCACTCGCACGGAACGTC
CCAACAACTCATATTGAGAATAGTCTAAATCTTGCACATGCTCATTATCGATGATTATGT
TATGCATGATTACACAAGCGTTCATAATGTACCAAAGGATCTTTTGATTCCAAAATCTAG
TCGGTCCTCTCATAATAGCAAATTGGGCTTGCAAAATCCCAAAAGCTCTCACCACATCTT
TCCTAGCCACCGCCTGAGCATTGTGGAAATCAAGATTTTATTACCTTGCGGTGCCGTCAA
CGGCTTCACAAATGTTTGCTACCTTGGGTAGATGTCATTCGCAAGATAGTAGCCATAGTT
GTATGTATGATCATTTGTTACAAACTCCATCAGTGTATTTTTACCATTTACAATCTTATT
CATGCGTGGTGACCGATTAAGAACGTTGATGTCATTCAAATATCCAAGCATTCCAAAAAA
GCATGTCAAATCCAAGTCTCCTGATCGGCCACTCCTTCAAGGATTATAGCGGAACCCTTT
TTGTTCTCGTGGAATTGTCCAATGCATGTCTTAGGACAGTTCTTTCAACTCCAATGCATG
CAATCTATTGAGCCTAGCATACCTGGAAACCCGCAAGCTTTGTCATCTCCAAAAGCCTTG
CGGTGTCTTCAGCATTGGGAGCTCTCAAATATTTCGGACCAAACAATTGCACAATTTCGA
CTGTGAAGCGCTTGACACACATGATGGCTTGACTCTCACCCGTGGCCAAGTGATCATCGA
CGAGATCCGCCGGAATACCGTATGCCAACATATGAAAAGTTGTGGTCACCTTTTGAAATG
TGTTATGCCTGAGTTCTTCGGCGGCATTCCTCCTTTGCTGAAAAACCTGATCATGGCTCG
CTAGTTTCTCTGCAATGCGTTTGAACAACTCGATGCTCATCCTAAAACAACGCTGAAAGT
AGGACTTAGGGTATGTGGCATCCTCCGCAAAAATAGTTTCTCATCAATCTGTTGTGTGCA
TCGATCTTATCCCTCCATAATTTCTGATGACCCATATCTGAACAACTGTGCTTCGGCTTT
TTATAGATGTGCATAGCTAGGATTATTGCAAGGTCCTCCTCCTCTTGAATATCAAATTCT
TCGTCCGAAGAATTGTAGGACAAATTCATCTACAGTATTGAATTTAAACTAGTTTAAAAC
TACAAACAAGATGCACTGAATTCATCTAAAAAATATAAAGTTGAAGCAATACATACCTTG
CAAGCGTTTTGTCGAACACCTTGTGGGCGCCGAGCTGCAAACGTCCGTCGGGCGTTGTTC
GTCGAAAGAATGGTGCGCTCGAGGGACTACTACGAGGAAAGGAAGTGAAGGAAGCAGTGG
CGGTACACGAAATAGGCGGGGGAAGTGCAGACGGATCGCCGGAGCAAAAGGGGAAGGTTG
CAGGCGGCAAGGCCAGCGCTTGGAGGTCTCAGATCTGGCGGTTGGTGAAGTCGCGTGCGG
ATCGTCATTGTCCAACGCGCGGGAGCAGAAGCAGCAGATACACCGTGCGTGCTCGACCAA
GTTTACCGCACGCGTGATTATTGCGTGACTGCTGGAGCGCCCGTTTCGGCTCCGCGCGCG
CAAAAAAACATTTTTCCTATGTGCGGCTAAAGATAGCGTTTCTGTTGAAGATGCTCTTAA
TATGTATTTTTTAACCTTTTTTCCTTGAAAATTACCCAACCAAACTATGAGGTTATCTCT
TTAGTACAAAGAAAGGTTACCAATGAGATGAATGATGGTCTCCTCGCACCATATTCAACT
TAGGAGGTTCGGAAGGCTTTTTTTGAGATTGGTGATTTAAAAGCGTCGGGCGGTGATTGC
CTTCATGCTGTTTTTTTAAATATTTTGGTCTATGCTAGGAGATGATCTAACCAAAGATGT
CGTACGTGCGGTGCATGCGTATTTTATACCGCATGGATGGAATGATACTGCAATTTTAAT
GATCTCGAAGGTAATTATCCTAAAAAGGTAATCCATTTCATACCAATCAGGTGGCGTACA
ATTTTATATCAAAAATGATTGTTGTCCATTTGTAGTTAATCCTATCGAACATTATTAGCC
CAACCCAGACTGCCTTTGTGCGTGGAAGGATGATTACATATAATATTTTGGTGTCATATG
TATTCTTCCACACAACTAAGATGAAAAGAGCGTGAAATGAGGTTCTTTGTGCATCAAGTT
GGACATGCACAAAGCATATGACCAAGTGGATGGGTCTTTTTTAAAGTTAATTTTGCTGAA
ACTCGGACTCCACGAGAGTTGGGTGAATTTAATTATGCATTGTGTATCCACTCTTGAATA
TCATGTTCGCTCTAATGTTGAAGAAACTGAGAGCTTTACACCTACAAGAAGATTAGGGCA
AGGAGATCCCCTCTCTTCCTATTTATTCTTGTTGTGTACTATGGGCCTTACTGCCATGTT
GGCACATCCGGACGAGAATGGGAATATGACCGGTGTAAAGGTTGGCAGAGATGCCCGACC
AATTTCCAATCTTGTCTTTGATGATGAATCTATGATACTTATGAGAGCTAATGCCACGAA
CACGGGGACCGTAAAATCAGTTTTAGATTTTTATTGTGCCGCCTCGGGACAAATGGTGAG
CGTAGAAAAATCAAGCATCTTTTTCAGTCCCAATACAAAAGTTGAAGACAACGCAAAAAA
ATTCATAATTCTAATTATGAGTGAATCCCCAAATGAAAAAAATGGGCTTACCAGCTAACA
TGGTTATGGATAAGAGTGATTGTTTTCAATTCCCGATTCATCGGGTGGCCATGAAAAATA
GCGGATGGTAAGAAAAAATGTTATTCACACGAGGTAGGAAATTGTCCACAACTTTGTAGT
TCAAGCTATCCCCACCTATGCCATGTCCGTCCTATAAAATTCCTAAAAAAACAAAGGAAA
TATTGACGCTATGTGACATTTGTGGTGGGTTGACGAGGACAATTAAAATAGGATGCATTG
GATGGCTTGGTGGAAGATGTGTGTTCCGAAAGAGCAAGGACGTATGGGTTTCCGGGATTT
ACATTGTTTCAACATTGCATTACAGGCTAAACAAGTGTGGCATCTTCTTGACAATCCCGA
TTCCGTATCTGCCACTGTCTTGAGAGCTAAGTATTTTCCTCATGGCGACCTGCACTACAA
AAAAAATGACCCTTTCATGACGTTATGACCTGAACGAAAACTTTTTATCTCATGTATAAG
ACACTTCCATGATGATAATTGTGACAAAAACATGTATCATCATAGATGTGGTGGGCTTCT
ACATCTATAACAAAAACTTATGACACGAAATGGCTATTCGTCCTGGGTGGGCCGAAGACG
GACATGCATGAAATTATTTGGGTCGTCCATGACATAAAAAATCATGATAGGAGTGAGGGC
GAGGAAATTTTCACGATTTCTCGGTTATGATGGGCAATTGGTGGGTGGTCTGGGCCTAGG
GATGTAGTGTGGTTTGTGTTTTCTCTCATATGCGTGTGTGTATGACGCATTCGCTAACTG
AACCCGAGCAAGGCGTTTGCTTACTGAACCCGAGCAATCGATTGATCCCTCGCACTACAT
ATTAAACATGAGCGATCGATCCCTCGCACTATGTATTGAACCCGATCGATGCCCTTCGTT
GCTAATTGAACCCGAGCGATCCCTTGGCCGGAGGTTATTACTAAACTCGATTGATCGATC
AATATAAATGTCGTGTGAGATGTGAGTTGAGCTAGCAGGTTGGTTGCCTCTCGATGAACA
CTGTTTGTTGTTGCCACGTGCACGATAGATGTAGTAGAACGAGTCAAGACTTTCATCGAT
CGAGCCCCTTCTAAGGGACATCGTAAGTTGAGCTAGCCGGTTGGTTGGTTGTGGATTCCC
ATTACTACCGCCTGATCGTACGTCCCACCTAGAAAGTGAGGGTGAGATGAACAGGACCCC
GTGGTAGTAGGCGGTTGGGCTGGATGAACCCGACCCCCAAGAGGTCGTGTCGTGGTATGC
CACACCCTATCCGGTGTTGGGGAAGATGAAAAGGACCTTGTGAAGGGTGGAGGAAGTCTG
TGATGGATGAACAGTGGCCTGTGGAGCCTCGTTTTGTGGCACGCCACAACCCTCCCGATG
AACAAGACCTTATTTTGACCGTAGGCAGCTAAACAGAAGCATGTTTCCTCCGTTGGGTGG
TACGCCAGACCCCTCCCATTGAACATGACCCCATTTTGGTCGTAGTCGGTCGAACGGAAG
TCTTTTTCCTGTGTTTTGTGGTACGCCACGCCCCTCCCATTGAACAAGAGCCCATTTTGA
CCATAGGTAGCAATGCAAAGTACTAATATGATGCCATAAAAGTTTCCCTTTTGAGATAAA
CCGTGTCGTACATAATAAGCATGCTCATCTAATGATTTGCCCTCAACTAAACTAGTTGGG
GTTTTAGCACGAGCACATAGGGATCGAAGATGATCCAAGTAAAAAGCTTCAGAAGTATAA
TAGATTTTGGGTGGTTCTTCAACCATTGGTTCGGTAGGTACAACTAACTTTTTTGGTTTG
ATATTCCTACCAATAACTAAAGATAGAAAACAAGAACAAAATAAAAACTACTTANNNNNN
NAGCAAACAAGCACACATGAGAATATTCACCCCATGCTATTG
