morexGenes - Barley RNA-seq Database

Contig contig_41920
Source Contig contig_41920
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41920 (8080 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_41920

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57606	1	553 bp	MLOC_57606.1	Available	Available	None
MLOC_57607	5	2446 bp	MLOC_57607.1	Available	Available	LOC_Os05g34460.1, FRAME:-2, EVALUE:0.0, 13105.m03584 protein OsDegp7 - Putative Deg protease homologue, expressed
CDS Structure of MLOC_57606

CDS Structure of MLOC_57607

Contig Sequence (8080 bp)

>contig_41920 8080 assembly3_WGSMorex_rbca.fasta
GCTGCCGCGCGCAGTGCCGGGGCGCTCGCGGCGAGCGCGGGTCCCAGGCTCGGCCTGGAC
CGCGGGCAAGAGCCGAAGCTGAAGACGGGGCGCGCATGGGGAGCGTGCGAACTGGGGTGC
TCTGCTCGTTTGAGGCAAAACGTCGAACAGGTCGCGGGCAGGGAGCAGCGAAGCGCCATT
GCAAGCCTTCTTTGCGCGCCTTGGCTTCTGGTCCTCTTTTACTCTTCCGCGGGTGGGAGA
TTCAGTTGGCCGCCGATGCCGCGAGAACTAGCTTACGAATTTGGTACGGGATTCGCGGCG
GTGACGATTCTGATGCCTAATCTGCTCCGGCTTGTGTGCTTGGGGTTGGGGAGATGGTAT
ATTTGCTTTTGGGTGAACCGGACGAGTGAACGGGACTCACGTGAACCGTGAGAGGGGCGG
CCGGCTCCACGCCCCTGCAATACGCTTGTGGACTTGGTTTTGCTGTAAAAAAAATGACTT
GGTTTTGAAAATCCGTTTGTATTTCGAGCATTTCAAACGTTTGATAAACTAGTCATGTAA
GTATTGAACGTTATTTGCAAAAAAGAAAGGTATTGAATGTTATGGGGAAAAAATCACCTA
TAATAATTATTTATGTCAATCACAAAAATGGAAGAAAACAATCATTTCTATGACAAGTAA
TTCCGGACAGAGGAGTAGAACACAAAAAGGAGCCGACGAGTGCAATTTCAAGAGTACGTA
ATTCCGGACAGAATAGAACATAAAGAGGAGTCGACGAACGCAATTTCAAGAGCACCGAGC
TGCACTGGAAGAAAAGGGATTCCAAATTCTGCTTTCCCAACTGTGAACACATATAGTCTT
ATAATATAGTGTAAGGAGGCTATCGTTAGCTGTACATATTACAAACATGGAACAAATCTT
CCCCCAAAAGGACAACTGAAACATTTCATCATCCTGGCAGCACGAAACAAACACCTGGGT
TTCCCCTTCTCTGCTAAATTTTTCTATAAATTCATCCGCAGCATCCAAAGAATTAACATG
TCAGCAGAACTTGTACAGTTTGGAACAAAGTGTCTTGGCTCCTGGAATTCCTATTTCCTA
TGTTCTGCTTTTGCGATGATACATAATCTGAATTTAACGTAAAGTTGCCAAAACCCGTAC
GGTGCCGAAACAAAGAATGATAAATAGTTGGGAGGGGAGCAAAGAATGATAGTGTTACAA
CTCAGGCTGAAGAACTTGGGTTCTTCTTATTTGCTGAAGACTTCCTCCTCTTCCTTCTGT
CAAAACTAAATCAGCCAAACAGGGGCCCACCGCAACCGATGGGCTCATGGCAACTCCAGG
TAGTTCTCAGCCTACCGCATCACATCTGTCTGGAAAAGCAATGGAGCTAATATCGATGCT
TCCGCATAAACTGTGTAGCTACCTCTATGAAAATGCGTCAGTTTGTGCATGACACCTCAG
TCTCACCACTGCTCGATTGTTCATCGACAAGGTCACTCGACCTGGCTGATGGAATCCTGT
GCCGCTTGAGGATCCGAGACGTGGCAAGCCTCGCGTTCTGAAATTTCAGGACGATCACCC
GCTCATCATCCAAATCAATTCTCAAGTTTTCTTCAGTGCAGTTATCCACGATACTGCACA
AATGCTTCAAATTCTCAACCTCAACACCATTCACCTTCTTTACCTGATCATATCATGAAG
TCTGGTCAGTTGAGAAAACTACAAAGGTCACTAAGGATGTGGTGTGTGCTATAGGATTTT
CTTATAGAAGAAAACCTGGAGTTCAGCCAGCCTTTCATAACCGACATTAATATCATCCAT
GAGGACCTGGAACGTAGATTGATCAGTACAAAGATAATTATGCAATACACGGCAACTGAA
TTCTAATAATACCATGAAACAGGAAACTGTGAGGAGAAGTGAACTAGTGCTGTAGTACCT
GAGATAATATTACTAACTGCTGACCAGCCTTCTTTGGAAGCTCTCTCAGTGCACGTTCAC
AGAGTCGGCGTGGTGAAGTGTTGTACCAGTCTTCTCCAAATTCATGGAGATAAGGCTGGG
TCAGCGGGATAAAAACAAAACCAGCAAAGATGTAGTAGCTGGGTAGTTTGTCAAACTGAT
GCACGGGAACCAAAGGTTGCAACTGCATAAGAAGAACTACATGTATAAGAATTACTTCAT
TGTCTACATGTGAACTGAAAAGGAGTAGCACGAGAGGGCAAAAAAGGTGACAGGAAATGA
TAGATACAAAGCCTAAGCCTGGGTGTTAGTATGTACAAAACCAAGGGATACACTTTTGTG
GATTTACTATTTAACCTGCATAAGAGATCAGGTGGTTATCCATAAATCTGGCCAAAACCA
ACCCTATCCAACTAGCTGTACAAAAGGTAGACAGGCTGAACCCACTGGACTAATGTAGTG
AATTAAGTGTGTTACAGACTTCACAGTTTGGGATGGGTTCTAAAATACAACCTCCGTCCA
GAATTAACTGTCGCTGAAATGAGTGTATCGACGCGTTTTAGTGTGTAGATACACTCATTT
CAACAACAGTTAATTACGGACGGAGGGAGTAGGTTATAAGTATTGAGATGGATGTTATTT
GTGTGGGTCTGTATTAGGGTTTGGTTCAGTTTAGTCAAGGTGGACTCAATCAATATGTTT
GACTCTTGAAGAAACTAAATACTAACAAACACTAAAACGGGGAACAACATCCCATCATTC
TTATATTTAGTACCAAACTCTCAAATAAAATGCACCATGGTTAATACAAAGCTCGAATAA
AATGTACTCCCTCTGTTCACAAATATAAGATGTTTTGGTTGTTTCAGTATGAACTATACA
TACGGACTGAAATAAACAAACAAACACACTAAAATGCATCTATATACATCCAAATCAGAA
AGAAGTTAAAACATCTTATAATAGTGAATGGAGGTAGTACAAGATTACATGGCCTTACAG
GTCTAAGTGTCACATTCAATTCATGCTCTTTGCCATCTCTTAGTACTTTGATAACGGCTG
TTTCTTCAGGCTTCTTCATGGACACAAGATGATCAAAGGTGATTCTCTCCCTATTTCGGA
ACGGAACTGCAAGTATTGAAAGAGATCATGATCATCAGTTGTTGAAGCTGAAACGCTAGT
ACGCTTCACATTTCGGAGTAGCACACAGATAGATTCATGGATCAGCAATGCAAAAACGCG
CAGCAGAGTATGCCAAATGATGGTCTTAAAATAACATAAATACATAATAACAGAAAACTT
AGATAAGTGATATTTTCAAATATACGAACATATAAGAAACCAAAAAATTGAGACATAAAA
TGGCTGCCAATGCATATTTGTAAGTTTTAAGCTCACCTGTCCCATCATTCGCAATAGGCA
CGCCATCAAACTCAAGAAGGATATCATCTTTCTTCAGAATTTTGTGAGCATCAGATAGAG
GATTTATTCTACTCACTAACACTCCAGTCATTTCAGGGCGCATACCAAAGCATTCTCTTA
TTTGGATGTTCTCAGTGGCCTGGCAAGATATTCCAAGAGAACAAAACCCAGAATATTTGC
CACTCTCTTCCACTCCAGAAATAAAACGCTTAATTACAGGCACAGGTATAATATACCTGC
AAAGAAAAGGGTTACACATAGAATTCTGGGTAAAAAGAAGGTTTAATAGGTGCAAGACCA
AAATAGTGGAGTATTCACCCAATGTTTTCTGCTCCTGACAGATTTTGGAAAGCAACTCCA
GCCACTTTATCACCCATGATTGCAGGCCCTCCACTGTTGCCTGGATTAATAGCTGCATCT
ATTTGTATAGCCATGAGCTGAGTCGCACCATGGGCATACTGTGTTGGTTCCACTCTAGAA
ACAACCCCCTTGGTGACAGAGATATTGTCTCCACCTGCACCATAAAGGTACATAATCATT
TAGTAGTCTACATGCTTATATGGTTTAGGTGTCTAAATAGAAGATCGGCAATACAACATC
GAAGCCAAGCTGAGCTGAATAAAAAATAGTAGAACTAGGTGACATTTCTGAAACAGCAGA
AACTAAGTAGAATTTGTCAGTATTGGTATCTTGAATCAAATCAGAGATTCCAACAACATT
ACAAGTTTGCAACCGGAGATCACATAGTAGAATCTAATACCTGACCCGATTCTAACAAAG
GTACATTTTCTAAAATCCACCAAGTCAACGACTATAAATATTTTAGTTGCACATTAAGAG
CCTTCATTTAAAAATAGAGTCTAACCAAACAACTCTTTTTTATGATAAGGGTAACTTTGC
AATTAAAAAAGACATATGCGAGTAGGAACAGTTGAATTCGTAGGATCATAAACAGATCGC
ATTTATCATCTTACTTTGTTTTAGATTTTAAAATCATAACAATATTAAGACTGTACCATA
TTAAGACCCCACCTAGTACATAATCAGCATGGTAAATAAATGTCTATAGAGTCATAAGAC
TCAAGAGTCTGTTTGGTTCATATACTAAGTTCGTCAACATTTGCCACGCCTTTTTGCCAT
ACATGCCTAATGTTAAGCAACACAAGGGGCATAGAATGCAGGAAAAGAACATTGCCACAA
GTGTGGCCACAAATCAAACAGGGGACTAACCAAGCCAAACTTTCCAAACTTGTGCTGTGG
AAAAGTGTGATAACCTTGGTATACCAACCAATGCCCTTAAGGTTGCAAAAATGATGAATG
CAGAAATGTGACTTCAACTCAAAATAACGTTCTATTTAGTTTCTCTTCCCAGCCAAGTTC
TTCCACTTCTATATCACAGAATAAGAGAGTGAACAAATTGTAATTTCAAAGCAAGAATAG
CCCTTGTCCTTCTACCAGATCGACGACCTTGTGCAGCGAACTTACTAATGCATATTCTCG
TATGTTTCAACATTCCAAATGTGGTGTCATGCAAAAGACCTACTATGAGGTGATCGCTTA
CAATTCTCCAATGCGTGCCGCGTGATCTTTCGTTGTATGTTCGCTCTTTTTAATCGTGAA
CCACACACAAAGGCCACAGGACACCAACATATTTTGATGACTTTTAAGCCAACGACCTAA
CTCCTCATATTTTATAGTTTCGTAGCAACGCACGGGCATCATGCTAGTTCATATGAAAGC
CGTAACACATACGATGATAAAAATACATGCATAGATTAGCATTCAACAAAAGGCCACAGC
GATACTATAATTCTATAACATCGTAGTGTCATGTAGTTTGCTTATTCGTATGGTGCAATA
AGAAATTAGGAAGCATATTTTTGCGATATCAAAGTTGCAGGGGCTACTTTCTACTGTGAT
TCTCATTATCAGCTAATAGTCTAACAAATATTATGATAATTGCATAAGTGGAGAAATCTA
TTACTGCCTCTGTCTCAAAATGTAAGATATTTTTTAGGCCTAGACTAAGCCTAAAAACGT
CTTACATTTTGAGACAGAGGGAGTAATGTTTTACTTGTCCACAATCTTGTATAAGCTATG
TTTTATGTAGTTGTCCCATATAGTCTATGTGTGAATAATTATATTATTTTCACTCGTTCA
CAGTAAAACCCTGCTAGCCAGTTTTAGTTATGCCACCACAGACAGCATGGTGATGCTATG
ATATACGTACATCCATAATTGGATACTTGTAGATGAAGTAATATATCTAACAAGTTTGGC
AACTAACAACCAAGTACTGCAAAAAGAATATCAGAATCAAACTCATACCCTGAGGGTAGC
CAACCACAGCGACAGCTTCCTGCAAAAATGGAATGTCTCCAAGATCTAAGCTGTTCATCC
CCTCCCAAAACTCCTCGCTCTCAACTGTAAGAAGAGCCAAATCACACTCATGGCCAATAG
CCTGAACTTCTGCCTTGAACTTTGTTGGCGATCCATGCTTCCTCACAAGAACAAAAGTAT
GATCAGCTACCACATGAGCATTTGTGATGATCCTTTTTCCAGAAATTACAAAGCCTACAA
CAGGGAGGCCAAATTAGTAGACAGCCCAAAGAATGAACTACATTTCATCACAAGGGCCCA
AAAATAACCAACCTTCTACAGTATGTCATTATGTGAAGGAATCATTCAGTAGTACTCCCT
CCATCCGAAAACCAACTTTGTACTAAATCAGCGACACTTATTTTGGGACTGAGGGGGTGC
GTTTTATGTTTTGTCTTACATCATGGATATTTGAACAGTGCACAAACGAAACGAGTAACA
TAGTTGGAAATTCATGTGTAATGACTCGTGGGTTGTTACTAAAGCTATTTTTTCATTTTC
CCGTTCTATCACATTTACTTTTTCGTACCACCAGAAATACACAATAAGGAAACAACGCCA
CAGATTTGCGTAAAAGGCACTCTCTTTGTCCGATTGAACTAGCATATTAACACGATACCT
ATTCTTCAAATCAAAATTAATATTCTCTTCTCCATGTCCATCGCTCCTATAGTAGGGGGA
TCCAAACACACTCCTCGAGCCTGCAGAGGGCTAAGCTGCTAGAGATCTGTTGCTTACCGG
AGCCCATGCTCTCGCGCTGGGCCTTGTTCTGCCACGGCAGGAAGTAGTTAGGGCCACTTG
ACACCGTGAACACCTTCACCACCGAGTCCAGTGCCAGCTCCACCGCCGCGAACGCGTCGG
TGTCATGCCGCGCCGCCGCAGACTCCACCTCCTCCTCTCCCTCGGATTTCTCCGCCAACG
GTATCGCCGGGGTTCCCAAAGCGCCGCATTCACCTAGGCGGAGAGAAGGTGTGGATGCGC
AAGAGATGGTGGAGAAGCGGGGGGCAGCGAGGTGGGGGAGTAGGGCGCGGGTCAGGGTCC
AGTGGGGCGGCAGAGGAGATGGATGTGGAGGCGACGGAGGTGATGGGTGGAAAGGGAGGC
GGCGGAGCGAGCGGGAGGAGGAGGAAGAGGAGAGGCGGCGGAGCAAGCGCGCGGAGGCGT
GCATGGCGGCCACCCCGGGTAGTGCCGGTGAGGGTTCGGAGATTTTTGGTCCGGGGGTTT
CGGTTAGGTTTGTGTCTGGGTTTGGGTTTGGGTTCAGGTTCGGACTGGGCTTGGGCTTGG
GCTTGGCTATGCTCCAATTTTGCATTTTAAAAGCTTTTTTCTTTTGAACAGTTTGTCATT
TCGTTTACAAGGAGGTCGAAAATAAAGTTTAGGACTAAAGAATCCCAAGAAACAGAGAAT
GTAGTTTTAAAGTTTTGTTTGGCTAACTCATTAGATATCTTGTTTGCCTTTTAGAGCAAT
GATCAAAAGAAAGTTTAGCAAAGTCTATGTATAATTGCTTGCACTCCGTAATAACAGCAC
TATCAGGTCTCATATAATTGTTCAAGAGCTGCATGGATTCCATCACAAAAGAACAATCAA
ATTCAACCTCTGTTTTAGTGCATCCAATGCTAGATATGAGGTAAATGTTATTTCTGATAG
GAAAAAGTTCAGCGGCATCACCATCACGAACATGCGATATGAACAAGTTGGCTACAACAA
TAACGTTGCCCTTATCATCTTGTACCACAGCTCCACTTGCTCCTGAAAGTGTATCCGCAT
GAAATGATGCATCAACATTCACCTTCATCATGCCACAAGTCGATTTCTTCCACATAACAG
CTTAGATGTAACTGGTTGCTAACACGGACATGGTTGTATTCTCCGATGTTTGTGCTGACA
TCCCTTTCACAATCTGTCGTCGTTGCCACCACAAGAACCAAGCTGCAATAGATACAAGTT
CTGACGTAGCAATGTCATCACTTATTGTGCCTAGCTTGAGAAGAATTTCCATCATTACAG
AGCCAGATTTGTCATCGGTAACTGCCTTCCGTATTGTATCCGTTAGACCCACTTGTGACC
AGACCTTTTGAACTTCTCGACTATTGAAGAGTGTAAGTTGGATGTCTTCCATCCCAACTT
TGCAGCGAGGGCATTGGGGAAAAGCAGAATATGTCGTGGAGCCAAACCCCAAAACATGGC
AAGACTCCGTGTAAAATTTTCCCTGTAAAGTGTTTCACCTTATGAAGGACTTTATGTCGA
GGGGATGACCCCCGGGTACCCCAAAGGCGACGAGTCGGACGGGGTGTCTGATGACCCACA
AGTGTAGGGGATCTATCGAAGACCTTTCGATAAGTAAGAG