Contig Data
morexGenes
Links



Map Locations of contig_41918 (5026 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41918

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57604 1 2766 bp MLOC_57604.1 Available Available LOC_Os05g23140.1, FRAME:-1, EVALUE:3e-69, 13105.m02345 protein retrotransposon protein, putative, LINE subclass, expressed





CDS Structure of MLOC_57604






Contig Sequence (5026 bp)

>contig_41918 5026 assembly3_WGSMorex_rbca.fasta
CGAACGGACGTCACCTCCGCGTTCTGCACACGTACANNNNNNTGACGATCTCCGCCTTCT
TAATCCAACAAGAGGGGCGGAGAGGTAGATGAGTTCTCAGGCAACACGACAGCGTGAAGG
CAGTGGTGGTGAACTATTCCGATAGGGCTTCGCCGAGCTCTACCGAACTAATCTAGACGA
AGAAAACGGTCTATGGAGGATAGCGCAACACGTGGCTTTTCAGGTGATGGTGCCCTCAAA
ACCTCTACTACATATAGGAGAAAGGGTAGGTGGGCTTGCCTTGGTCCCTTCTTCAAGGAG
GAGAGGTTCGGCCGAAGTAGGCTGGTGAAGCAACTACCTATTCACACGTAGAAATGGCCG
CTACGCGCGTGGTAAAAAGAAATTGCACGCGTCGCGCATCTTTTGGAGATGCTCTTACGA
TGTCCATCTCATGCAAAACGTCCTCTCAGCCATGATGAGTTGAGCACGTTTATATAGAGT
GCATGATAGGCCGTGGATTCACCTCACTATGTTCATCCCATGCAAAACGTCCTCTCAGCT
ATGATGAATTGGGCATGTTTATATAGGGTGCATGAAGTCACACATGCTTGCCCTTACCCT
CAAAAGATCTTCAATATTTTAAATTTTGTTTAAATTCTTTAAAATTGAGTAGCATTTTTA
AATATTTTCGAAAAATGTTCAAAATTTTAAAAAATGTTTAGTAGAAATTTATTTTTTATC
AATTACAAAGACAGAAAATCAAAATGCGTTTGATTTATCAAGAAATGTTTAGAATTACAA
ATTTTCTGTAAATTTTCAGAAAATGTTTGTAATTTGTTTAAATTTTCGAAAAACATAGAA
TTCCAAATTGTGTTTAAAGTTATGCTCAAGCTTGATTCACCATCTGATTTTTTTTCAGAG
ATTGAAATTGTTTAGCAGTCTAAACACCTGCAAGCTATCAAAACAAAATCTCACTTCAAC
ATATCTCGACACCCCAAACTACAAGAAATGCATGTATTCCCTCCGTCCGGAATTATTTGT
CACAACAATGAATAAAAATAAATGTATCTTAAATTAAAATACACCTAGATACATTCATTC
TTATAACAATATTTTTGAATGGAGGGAGTATATGTATAGATTCAACATGTCTTCAAAAAG
GACCGACAATATGATAGCTGCCGCCAAACACACCCTAAAAAGGGCGCGTACCAACAAAAT
TTTGGGATAATATTAAGGGGCCGCTAAGAAAAAGTCGAATAATTAAGAATCAGCCGGATG
ATTTTAATCATCATCGTTGGATCAACACACTTGTGATCATTGGATTACAACAAAGCCATG
ACAACAACGAGTGAATGCAGTACCATTGCAACCTAGGCGAAGCTCCAACAAAGCACCGAT
GGCATGCGACCCCATCGGAGCTTTAGTGCAGCACTGCCGCTCCGGTGAATCTCCATTGCA
ACTTCGGCCAAGCTCCATTGCAACCTCGATGAAGATCCATTGCAGTCTTGACGGAGTTCC
GACACAACATCGAGGCCTCCGGTAAAGCTCGATTGCAACTCCGATGGGGCTCCATTGCAA
CCCCGTGGAGCTCCAACACAGCAGCAGCGACGTCATCGAGATGAAACCACTGCAACAGCA
ACGCCAGCGATGACACCATCGGAATCACCGCAGCGGCGACCCCCTCCCCTCCCCCACGGT
CGCGTTCCGATGTCACCGGAACCACCGCAGTGGCGACCCCACCCCCACAGTCGCGCCCCG
TCTCAACGCCGGAATAGAACCGCCACAACGACAACGCCACCGGAACCACCGCTGCGTCCG
TGAACGAAGCGTCGCCGCCGCCACACGCCTGCCATGATAGAGCCACCGCAGACTTCCACC
TCACCCAATCACCAAGCAAGCTCCGCCTTGGTGCCGAGCTTCGCAGCCGGACCGAAAGCT
GGCCGTCGAACCAATGGTGTTCGACGTTGTTTTTTGATTCCGGGGCGGATCGAACCAGCG
ATGGGGAAGAAGATAAGGTAAGCGATGGGGGAAGAAGATAAGGTATGCACGTTGTCGGGG
CCAGACTTACGCGTCGTTTCGTTATTATCATCCGTCTGATTCTAATCCTTTTCCTATTAT
TAATCATGGTCTTATGTGCTAGAAGATGCGATTCAAAAAAAAATTGTGCCAGAGTATAAA
GATCAACAACCAGGAAAGGTTTATCGCAAAAAAGAACAAGGAAGATATTCAACGGATCAT
TTTGCTGGTATATAAATTATGGGCTCAGACAGAACGGTCAATTTTTGAATCAAAGGAGTC
TGGAAACTAAAAATACCACAACTTGTTCGAATCAAAGGAGCCTCAAAACTAAAAATACAC
TCTGAGCTACTCCCGTTAGCCTTATCCATGTCCATCACTGCACCTGTATGCTGACGACTT
TGCCACCGGACGGCGACACCTTGGGGATGGTGAGGTAGAGCACGCCGTCCCTCACCTCCG
CGGCGATCCTCTCCACCTCCACGTTCTCCGGCAGCTCCACCCGCGTCCTGTACCGCCCGT
AGCTCGCCGCCGGCCACGGCTCCTCCTCCTCCCCCTCCTCCACGTTGCCGTCCTCTCCGG
CCGCCTCGCCTTGCTTCGCCGCCTTCTCGGCGACCACCACCAGCGTCCGGTCCTGCACGC
TCACGCGCACGTCCTCCCGCGACATGCCCGGCATGTCAAACCGCACCAGGTAGTCCCCCG
CGCGCTCCTTGATCTCCCACGGCGACCGCCCGCGCCGGTCGTCGGCGCGCCGTTCCGTGG
GCGACCGCGACACGGTTGTCGCGCCCGGCACCACGAAAGGGCGGCGGCCGCCGTCGTCGT
CCTCCTCGTCCATGATGCGCTCCATGGTCCGCATCATCTGGTCGAGCGTTCGCGCGTCCG
GGAAGCTGTCCCATAGCCCTGCGGAAGTGCCAATTCAAGCCATTCGTCCAGACAGCCGGT
GGAGAATCATCAAGAAATGCAGTCCGGGAGCTCTTACCGAATGGCGTGGTTTGGATGACC
CTCCTCCGCGGAGCAGGATTCCCATTCCCCTGCTGCCGCGGCTGTCTAGCCGTCGCCGTC
GGGGGCCTCCGCAGATGGTCGAGGTTATCGGCGGCTCCGTTCCTGGTGGACCGGACCCTC
ACCGAGCCTCGCCTGGGGCGGCAAGCAGCCCACGGGGACGCGGTGACGGTCTGCGGGTTG
GAGACCACCGCCTGCATCATTCTCGCCGAAGATTTGATTTCCCTTGGACTTGGATTGATT
GGTTGCCTGATGATGAGAAATTAGCGCGACTGTAGAACGCAATGCTGCCCTGTGTCATTT
ATATGAACGGAGGAGCAGAGATATGGCGGACGCAGCACAGGGATCATGACTCATGAGAAG
GATGGAGTGGTTTCTAGAGGAAGGTTTGGGGTTCCAGAACTATCTTTTCCAATCTTTGGG
TTTTTGTTTCTGGTTATATCAGAACAGGTTCCAGAACTTTCAGGATGCCACGGATTTTGC
ATTGGATTTGGATTCCGTGGGCCCATGGGCTTTGAGAGGTCTGGTTCAAACAACACTAAG
GGCACATCAAACATTTCGGATCTCATTTGCCACATTTTCAAAATGACCACTTGGTTTTTT
TCTTTTTCTTTTTTTTGGTTTTCCTAGGTTTTGGTAGATCTAAAAGAAACTTTTTTTCAG
GAAGTGATGCATTTCTCGTGAGAAGCACAACAAGAGGTTCCAATACAAGCACACTCTATG
CTTTTCGAGAAGGAGTAATCATAATTGTGTTTTGTCTCCATTTTTTATGCACAACCTATG
CTTCAACGCCCGTGCTTCTCAAAAAATTGAAAAAGGAGAGTTGTGTTTCCGGTCATCTTT
CCTTCTACTTCTTTTTTTTGGTCTTTTTTGCCGGTTTTCATTTTTTCACCTTTTTTGTTT
TGGTTTCTTTGTTTTGTTATGTTTTGTCTCCATTTTAGATAGTTTTGTGAAAAATGTTTG
TCGAAACTTATTGATAATGGATCTAGTTACAAAGAACTTGGTGTGAGAAATCTAACGATA
AAAGCAGGCTGTAATTTAGATGCACTGTTCAAGTGATACAATGTTAAAAAAATGTATAAA
AAAAGGAAACAACGCACAGATTGCGATAAGTACCGTTCGTCACTTGTCCCCACCAAAAAA
TATGGAAGTGACATTTACAAGGGATACTCATTAATCTGTGATTTCAGCAAATAAAACAAA
TCACCTACGGCGACACGCAACAATGTCTCGCCTCAGGTGATCATTCTTCTAATGGGCCAG
ACCAACAACCAGTGTGCCAACAGTTTCTTGAACTTTTACCCTAAAAAGACAGTTTCTTGA
ACTTTTACCCTAAAAAGACAGTTTCTTGAACTTTTTATGCTACACATATGGGGTTGGGTT
AGGGGTTTTACGCATCTTTTATCCGGGTTCAGGAAGATTTCGAGTGTTTTTTTTCTGTTT
TCTTCATTTGTTCCATTTTCTTCTTCTAATTTTACCTTTTCCTTTTTATTTCTATTTTAA
AATACATGTCAATTTTTAATTTACCTTGGACCTTTTTTACAGACATTGTACATTTTTTAT
ATGCATGTCAACTATTATTTTAATACACATTCAAGTTTTATGCACATGTTGAAGATTTTT
CAAGGAAAACAATATTCCTAAACCGACTAGTTTATGTTTGCATCAAACGCACCATGAGGC
ATCCGATGGAGCTCGATCCACGTACTCACTTCAGCCAGCCTGTAGCACGCCACGTTCCCA
TGGGGGCACCGACGCCAAACTTTATCTTCTTAGACCCTGTTTGAAACCATCCAGATTATA
TAATTCAGTTTTTATAATCTATTCTGTCTCCAAACAGAACAACTTATGATGTAGATTATA
AAAACTAGATGGGTAGATTATTAAAAACTCATAATCTANNNNNNACCAGCTAAAATCAGA
TTATGGATTCTTAATGACTCATTACCCTTGTAAAGTTGGAGATAATTACATTCCTACCAC
TGCCATCCTCCTTTTTTTTTTAAAAACAGAGGGCAGACAGGTCATT