morexGenes - Barley RNA-seq Database

Contig contig_41905
Source Contig contig_41905
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41905 (6269 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_41905

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57599	8	2559 bp	MLOC_57599.2	Available	Available	LOC_Os12g44090.1, FRAME:-2, EVALUE:0.0, 13112.m04655 protein leucine-rich repeat family protein, putative, expressed
CDS Structure of MLOC_57599

Contig Sequence (6269 bp)

>contig_41905 6269 assembly3_WGSMorex_rbca.fasta
TGTAGTATCTACTTGCAGTTCTCCTAAAACTTTGTAGATGGTCTGTGCGTGGTATGGGTG
TTCTTGGGTTTTTGCCCTGCGATAGGCTGCTCGATGACGAGTGTCTATGTGTAGGTTTTC
CAAGAATGCTCTGAACTCGCACCCCTTTCTCTGGTTTCCTTTTTTCAAACTTTGAACTTT
GTATTTCCGTTATGTGAGTAATGGAAAAGGGGTTGCCCGGTTCAAAAATATATATACTGA
CGTTTTCGCAACATGCTCTTTTGTTGCAAACAAAATTGCAACATGATCTATGTTGCAAAA
GACCCGTCAGTCATTTTTTAACCCGTCAATCGGACGACCTAGCAGCGTGTTTGTTTTCGC
AACTGGAGCATTGTTTCAGGATTTTGTGTGGTGGACGGAGGCGACCGAGCTGATGATCGG
AGGATGCACGCGTATACATTGGACGGCTAAAAGGGTGGTGGATGGTTACTACAAATCCAT
CGATGGATGCCAAGCAGTCCCCTTCTTTCTTTCTTTTACTCCAAGTATTTAACAAATTGA
CTTTCTCCCGGGGGACGATATTACTTTCCTTTTTTTTTGAAAAATATATTACCTTCTTTT
TTAATGTAATAGTCGCATTCATCAACCCTAAACGCAAAGATGACATGTTTGAAAATTTCA
TTGATTTTGTAGGTTAAAAACTTCTATTTGTATCAATTTCTATTTTATTTGGTTTATATT
TTATGTTTTTACTTTTGTATCAGTTTCCGTTTTGTTTTTCATTTTCATTTTCATTTTCCG
TTACCAGTTTTAGGATTTTTAAAGTATTCATCGCACTTTCTAGAAAGGCTGGTCATATAT
TTTAAAAATGTTAAACGTGTATAAAAACAGTTTTGATGTACACAAAAATATGTATGAAAA
AATAGTCATCAAAACAAGTTTTTGAAAATAATCATACGTTTAAATAGTTTTAAATGTGTA
CAAAAAATGTTGCATGTGTATATGAAATCCTACAATGTGTATAGACACAGAAACATATGT
TCCAAGAAACTTTAATCATCTACTTGAATAAAAATTCCTATGAAATCATTTGTACTATAT
TTCATAGGAAATCAAACATTCATTTCAACCTGTTTTTACAGTTCCTTTGTTTTACCTGTG
TCATCAAACACTCCTTGATAATTCTGTAGGGTTCGAATGGACATGCCACTCCAACCATCT
ACTTTTTCTATTCCTGCGTTTATAAAATCCTGCGAATCAAAAAGGCCTCGTTCATTCATT
CATATCTCACTCCCCATCAAGTTATAGCTGCCGCACTCCTTTGTCTCCAAATCGATGGCG
ATTTTGAATAGGAGGGGCTCGGTTTTCCAAGTGTGTATGCTGCCCAAGAAGGGGATATTT
GGAGCCACTCCCTCAGCAACAGATTCTCTGATAATAAACTAAACTAGTGTAGTAGCCTAA
TGCACGCACGGCCTCTCATAAACTAATCATCATAAAGTCTAATGGTGCACTATACCTACA
CCTAAGCTGCCATTAAGCTGTTGACAAAGGTGAGACTACTCCTAGTTGGCCGGTTATGGA
ATAATAGTGCTCCCCTTTTCACCATTGTCTGATGACAACCTTTAGCTGGCTCTCCGGTGT
ATATGCGCCTAATTTAAAAAAGTCGAAAAAATCTAAAACTTTTTCGAAAACAAATTTGAC
CTTGTGTTGTAGTATTTGTGTAGAAGTCTCGCAAAAAAAAAAATGAACATTCAAGGTAAA
TTTGACCTAGTTTACTTTACCTATCTTGCTTGTCTGATTTGGTTCAAAGGAAGTTGGCCA
TGCAATCAAAATGCCAAAAAGGAAAAAAGGAAAATGCTGAAAGGAAGGAGCGACTAGGCA
GAGAAACAACAGCAAAAAAAATGGAAAAGGGATAAAAGAAACAAAGCTCAAAGATCTCCA
TGTCTATGTACAAAAGCACAGTCGATTCCTGACTGATTTGGTTCTGGTTCTGACCAAAGA
ACCACTCACTAACCTGGGCACAACACAACACAACTTAAAGATGACAACTGCTCCTCCTAC
CAAAGCTGGTTCATCTCATCTCATCTCATCATCAAGTATCTACAAAACTTGAGCTTCTCC
CATCCAGGTAGATCATCATCGATCATGGCACAGCACCAGCACAAGGGGTAGTGTTCACTC
ACTCACTCACTCGCCTGCTCATCAGAGAGAGCTCAGAGCTCCAGGTGCTGCTCGTAGTAG
AGCTCGCTGAGGCAGGGCGACAGGATCTCCTCCTCCAGCATCTTGAGCACCGCCCCCATC
GACGGCCGCTGCCCCGGGTCCGCGTCCGTGCACATGGCCGCGATGTCCAGGATCCCCTCC
ACCGCCTCCACCTCCGCGTCGCCCGACCTCTCATCCAGGATCTCCTCCAGACGGTGCTCC
CCGCTCAGCGTGTTCAGCTGCACGTGCATGCATGCCACAGCAAAGCAAAGGTGGTTCAGA
CTCAAGACTGGATTATTCTTCAGAGCAGTTGCTTGCTTGCTTGCATGCTTTGGGAGCAAC
AGCTTTGGAGCAAGACTAATATATACTTACCCAGCCGACGATGTTGAGACCCTTGTTGAG
GAAGCAGGAATCCGTAGGCCTCTTTCCGGTCACCAGCTCCAGCAAAAGCACCCCAAAGCT
ATACACGTCCGATTTCTCGGTCGAATGCCCATTTTGCAGGTACTCTGGCACCAAGAAGTT
AACATAAACTTTACTTATTAGTTTCAAAGAAAAGGTAAGCTGCGTATTTATTGTTCAGAA
CTTGCCAAGTTTCTCAACAATAAGCTACACAACAATTCCATGGCGTCAAAGTAATTTACA
GGAATTAACAAGACACATCTCTTCCCTCAAAGTAATGGATACATATTAGTTAACAGATGT
GTTACAATGTGAAATAGCATTGGGAGAACGAGTACCTGGAGCTAGGTACCCGAAGGTACC
CGCCACGACAGTGGTTACGTGGGTCTCGTTGTCTACCAGCAGCCTCGCGAGGCCGAAATC
AGACACGCGCGGCTCCAAGCATCTGTCTAGAAGGATGTTGCTGGCTTTGATGTCACGGTG
GACAATCCCCGGCGAGCAGTCGTGGTGCAGATACGCCAAACCACGGGCGGAGCCCAGGGC
GATCTTCATACGTGCATTCCAGTTCAATGGCTGATCCTCCTGCGCATCACCTGCATTGGT
AACACGTTACAGTAAGCACCAGTCAACATAAGATGGCATTGCAACCACAATGATGCAATA
GTATTAGTTAGTGCGCCGAGAGAGGGATATAGTGGGTCCTACCATGGAGGTAGCTGTCCA
AGCTGCCCAGCTCCATGAAGTCATATATGAGCAGTTTGGCCGTGGAGAGCCGGCAGTATC
CTCGCAGATTGACAAGGTTGATATGCCTAATGCTGCCCAGGATCTCGAGCTCCTTCTCGA
AAGTCTTTTCTCGCCTCTCCCGGTTGAGGTCAATCCTCTTGACGGCAAACGCCGTGCCGT
CGTCCATCACCATCTTGTACACCGTACCAAACCCGCCACAACCAACCACATCCTCTTCGT
CGAGCAGCTCCAGCCTTCTAATGATCTCGCCCGACGAATACGGAAGGTTCCACTGGTATG
TCACGAGGGTTGCACCTAAGTCGTCAAGACATCACGCAGTTAGTTAGTGAGTGAGCCTGA
GTATTTGGTTGGTGTGATTTTTTTCATTACCATCCGGGACAGTTGGCTTGTCCATTTTCA
CATAGTTCACACCATTCTTCTTCCTGGACAGCAAGCATACCCAGAGGAAGCCCAGCACCG
CGACCAGCGCGACGGCCATGGTTGACATTGAACCGATCACGACGCCATTCAGGAAGTGCG
AGGTTTTGTTGTTGCTGGTGATTGGAGAAACACCTATATGGTTACCAGAAATAAATGACC
ACGAGTCAGTTGATCACACACAGATCCTACCAAAATTCAAAAAACAGTCCCCCACCCCAC
AATTGCAAAGGCAGCATTAGAATTTAAGACTTGCCAGAAGAGGAGAGGGGGTCGGAGTGC
GGCAGCACCGCAGGGAACCCGAGGGTTCCGCGGCAACCTTTCTGTATGGGCAGCCCGCAA
AGCTCCAGATTTCCGACATACCTGCAGCATTTGAAACGCACCAGAGCGCATTAAAGCCAC
ACTAGCTGAAGCTGAAGCTGATACAGTACAGATGTGGTACAAACTAAAAGATACCACTCA
TTCATTCACATTTTGCAACATCTACCATCAACATCATAAAGAAAGAAGGACACACAACAA
ACTGGAAGGAGACGAGGCCAGGGCTGGGCTTAAGCTTACGAGCTGCTCTTGAAGGTTCCG
AGGACGCCGACGTTCGGGATCTCTCCAGAGAAGAAGTTGGTGGAGAGGTTCCTGCATTTG
TCACGGTTCAAGCTTTGCATCAGCGTCATCCTTGCCAATCCAACTTGTAAACATTCGCCA
AGGAGATCACAGGAGCAACAACGTACAGGAACCGCAGGTGAGTTAGGCTCCCTATCGACG
CTGGTATCGCGCCGCGCAGCAGGTTGCTGGACAGGTCCCTGCATTTTTATCCGGCACACA
TACATACGTCATCAGAGGCCCGACAACACACCAGGCCGTGGAACAGAGAGGATGGCGGAA
CGTACAGGATGGTGAGGTGAGTGAGGTCGCCGATCCCCGGAGGGATGCCGCCTTGCAGGT
AGTTGGCTCTCAGGTAGCTGGAGAAGATACAGGCAGACAATGAAATGAACGCCCACATTT
TATTTTAGCAGGTATTCACCAATCTAGAACGTAGCAAAGAAACTAACAAAGAAATCGAAT
GAACTAGTAGTAGTACAAATCAGAGAGATTGTATGGTATACTCACATCGCTCTGAGCTCT
GTGCAGTTCCTGATCTCGGCGGGGATGGGGCCGTGCAGGCTGTTCTGGTGCAGAGCTCTG
AAGGAAGAGGGAGCAGGGTACGTGAGGCCGATAATACAGGCGTGTTTCGGTGCTCTGAAA
ATCTAGGCGGAGTGGATTTTGTTGGTGGTGAAGGTGTGAGAGGAATGAAGGGAACTTACA
GCCTCTGCAGCTTGGCGAGCCTGCCGATGCTGGGGGAGATGATGCCGCCGAGCTGCATGT
AGGGCAGATTTCTGCCACGCATAAAAGAGAGGGAGGGAGAGAGAGATTATTCATCCATTG
GTTCATTCGTCCGAGCAAGCAAGCAAGGAAGGAAGGAATCCAAGAAGCCAGCAGCCCAAG
CAACAATCCAATCGAATCGAATGGAGAGGAACGAAGAATGGTGGGCGGAGGGAGGCGTGT
GTGATGAATCTGATGTGGAATGCAGAAGGGGGGAAGAGGGAGGAGGGGGGAGCGTAGTAC
ATGGACTGGACCCTGAGGTCGGGGAAGGAGCAGGAGACGCCCTCCCAGGCGCAGGGGTTG
GCGTCGGCGGCCCGCCAGCTCCCCAGCCGCTGCTGCCCCGCCGTGGCGTTGAATGCCACC
TTCAGCTCCAGCAGCGCCTCCCCTGCGACACACACACACACCGGCCGGCCGGCCAAGGAA
GGAAAGGAAACGAAGCAAACATCGATGAGCCATGTAGATTTGTTCAGCAGATGGACTGGC
CGTGGCCGGGCCGGAATGCACGTACCGTCCGGTGTGAGCGCCATGGACGCCGTGGAGCAG
AGGAGGAGGATGAGGAGGGCCCCGGCGGCATGGCCGCCGCTGCCATGCTTCTTGGTCCCG
GGGTTGGCGGCCATGGTGGGTGGCTGGGGTTTGGGATGGGATGGAGGGGTTTGAAGTGGC
TGAGAGTGAGAGTGAGCTTGGGGAGTGAGGTGTGGGAGAAGCCAGGCCTTTGCTTGCTTT
AATTATTGATTGGCTGCGCGTGTGTGGGTGGGCTGACGGGGAGTCCCAGGCGGGCCGCTG
TAGCGCGGCTGACCAGTGGGCCCATGCGTGTCCGTGGTCCCGCTGCGCAGTCAGAGACAG
ACGCAGACGCAGACGCAGGGGGCGGTACATGTTGGTTGGTCCACGGGGGCCGTGCTGGGG
TCTCGTGGGCCGCTTTCGAAAAAGGCAGACCTCAGCCAAGAGGATTTTTTCACTGTTTTC
ATCCTTAAATCGTAAGTTCATCATGTAACGAACTCGGTTCGAAAGTATTTCACGTTTTGA
CATTTTTGGAAATGCCACAGTCCGTGGCGTTGCAGCCTTGTTATGAAACGCCAGTCTACT
GGACGTTGCGGGCCTCGGGTGCAACGCCAGTCTACTCGACGTTGCGGCCCTTCCCAGAAA
CGCCAAGGTGGCTGGCGTTGCAGGCCTCA