Map Locations of contig_41887 (8467 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41887

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57580 4 1669 bp AK248180.1 Available Available None
MLOC_57579 2 984 bp AK356959 Not available Available None





CDS Structure of MLOC_57580






CDS Structure of MLOC_57579






Contig Sequence (8467 bp)

>contig_41887 8467 assembly3_WGSMorex_rbca.fasta
CCCGGGAACGGCTCGACCTCCGGCGGACTGGGCGTGACCTCCGGTGGACCCGGGAACGGC
TCGACCTCCGGCGGGCTGGGCGTCACCTCCGGTGGCCCCGGGAACGGTGCGACCTCCGGC
GGGCTGGGCGCAACCTCCGGCGGACTCGGGTACACTATCGGCGGCAGCGGCGTCACATCC
GGCGGGCTCGGGAACGGCTCGACGTCCGGAGGGCTAGGCGCGACGACTGGCGGCAGTGGC
GCTATCTCGGGCGGACTGGGCGCGACGACCGGTGGCAGCGGCGCTATCTCGGGCGGGCTG
GGCGCGACGACCGGCGGCAGCGGCGCGATCTCAGGCGGGCTCGGCACGACCTCCGGCGGG
CTGGGCACGACCTCAGGCGGGCTCGGCGTTACCTCGGGCGGCGGAGGGGAGTAGAACTGC
ATGGGCGGCGGCGGCGAGAGGTATGCGAAGGACGGCGCCGGGATGACGGGCGGCGGCGAG
GAGGCTTCCGGCGCGCAGCCGGGTGATCCCGGAGGCGGAGAGGCCGAGTGGTGGTCCGAC
TCGGAGTACTGGTCCAGCAGCTCGTCCACCGTCACCACCTTCGCTCCTGTTTGTGCACCC
AACATAACCATCAATCAGTGTGACGTTAGTGCTTTTCTTAATAAGCTAACTTAACCGAAT
GTATACAAATTTCGCGGCAAGGAATTTCAGTAAGATCAACCTGTTAGCATGCTATAAGAT
CGACCGGATTTGCACGTACACAACATTGTGAGTACGAATTGACACACAAATTTCAGCAAA
ATTTGGCGTAAAACTCCGGTAAGCGCGGGCAAAATTTTGTTGATGGGGTGGCAAACACAC
ACGACCCGCACACACCTCTCGCTCAAGTGCGGCGTCCTCTTAAGGAAGTGTATTAAGATC
GATGGAAGAAGCAGGAGCATACATACCGCATTGCGCGACGAAGAAGGCGAGCACGACGAC
AATGGCGGGGAGGAGGAGAGGGCGTGAAGGGCACCGGAAGCTCTTGCGTTCCCCCATGGC
CGGTGCTTTCCTGTGCAATGAGGGGAATGGAGCTGGGGCTGCTGATATAGCCATGGAGCA
TGGTTGTGCAAAGGTTAAAGGTTAAAGGAGGAGACATTGCAAATGCAGCAAAGCTACTAG
CAGAATCCAGTGAAGTGAAAGAGTGAGGGATGGGTGAGCTTTAGAGTGTGTTTGGTAAAC
ACTGAGGCAGAGGCAGAGCACGGAAATGATTGGATTTGTTGGTGGGTTTGAGGTTCTTTT
CTCCTTTGGCAGTCTTGGCACAGATGCTTTGCTTGCTACCGCCCAGAGAGAAATGAGGAT
GGATCCTCCTTCCTCCTCCAGCCGACTCCATGGCTCCTTTTCCTCCTCATTTGCTTCGGA
TCCACTCAACATAGGTCCCCACCCCACACAAAAAAACAGCATCTGCATATCGTTGTAAAA
TGTGTTCATGCACGCAAGGATCTTATTTATTGTACGTACTACAGTTTTCATAAAGTTCAA
ATTTGCGGACGGGAATTAAAAGGGCACAGGATTAACTCAAAAAAAATGGCACAAAGCAGC
AGACAGCGGGCATCTCAAAGTGTTGCGGAAGGTACAAAGAACACATTAGTAGTACCGGAG
AGAAGAATTGCATTCCCTTTGAGATATTGCTGAAACAAGCAACATAATCCTGTTTTGCTT
TGCGATACACAATCATGCTGCAGACAGCAAAATGATGGTGCTAACATAAACACTACTACA
GCTGGTGAAATGAAGCTGCTAATTTCATCGTCGGGTTTACAGAGCTGAAGATACACATAT
CGTCAATCAACAATGGAAATTGGTTTCTATGGCTAACAGATTTCCACTCTTGGTACGGTA
AGATAGGACAAATGATGTTGGATCAAAATCTCCAAGCTGACCAATACAATCTTTCAACTG
CAGTAGCTCCAGTCACTAACTAAATAAATCAACAACAGGGGGGGGTCCAGGATCACCGAT
TGCACGGCGCCGCTCATATGGATGCGCAGGTGAGCCCGTTGGTGAATCGCATCGAGCTGT
TTACTGAACACGGGACACAGCTTGTTTATGGGGTACTTGTAGTAAACGTAAGATCTGATA
CTCTTCGATCGAACGCAGCATCAACCGAGTCCATCTGTCCACATAAGTTTCAAAACAAGA
AAGATGATATTAGATTCGATCTCTGTAACTTGGAAACAAATAACAGAGCATGTGAGTTTC
CTCTTTATGAACAAAAGTTGATGGCTCACGGGCCATATGAAAGCTGACCTGGAACCAAAC
TCTCGGCACATTCTCGATCAAAATTAAGTTATAAATGCTACGGTACTGGCAGAAGCTCAG
CCACCTATTTCTTGTTACAAACTCGTAATACATAGAAGTAATGCTTAAACTGAAATTAAT
ACATACACGTTTGCGTACTGTCCAGGGCTTGGCCGATAACCCTCAAGTCATTAGCATCAT
GAGATTTGTCAGATTGTAAAAAAACTTACTAGCAGGAAGAACAATGTAAATACCTACTTG
GAACTCCTGATGTGCGCGAAATCAGCAGGATATAGATGATCAAACAAATAAACACCAAGG
AGATGTCATGAAAATGTAAATCGGTAGTATAATAGGGAATCATCTCACATACTCATCAGT
TTCCAAATACTTGAAGGTCTAGGTCCATCCTAAGTCAAACATCTTTAAGTTTGACCAAGT
CTATAGAATCATATTAGTTTCATTCGGTGCATGATATAGTGTAGTTCATACTACAGTCAA
TGTAGTAGACGTTGATATATTTTTCTATAGACTTGGTCAAACATAAAGCTGTTTGACTTG
GGACAAACCTAGAACTTCCAAGTAATTTCGAACGGAGGAAGTATGCAGCTAGCCAACTAT
TTCTCTCTTTTCAATGCTCATATATGTTGTTCTACGGGTGCTGTACTCCAATGATTTTGA
GAGATCATTGGTAATGGAAACATAAAAAACAGAACTTACCTGGCTAGTTTCGTCATGCAC
CTGATACATGGGCAGCGCCAACCTTCTTTCCTCCTACACAAATCAACAAACATTTCAGAC
ATTACAACTGTATCTGGATGATCAGACGAATTCCCAGGTCACCCGTAAGAATGAGAACAA
AGAGAAGGGAATAAATACCATCGACATTGCTTCATCATCCCACACCAGATATACCTCACT
CGTAGCTGGTTGAGTAGCAGAGGTTTTACTATTAGTGGCAGGTGCAGGTGGATGTCCAAC
TGCTGGACCTCCTGTACCTGGAACAGATGCATGCACAAGTGAATTCACAAAGGCCATGCC
TGACACCAAGAGCAAACATAAATATCAGATGGAAATACAAAACATCAACTCAGAAATACC
CCTTCACATAAAATGAGCTAAATATTGCTCCTAATGAATAAGTAATGTTTTCAGTAAGCA
GTAACAGAGAAAATGTTGCCTAAATTCCTCTCAGGTGTTAAGAATAAGATTTAATTAGTC
CATATTGTAATCTGATTTCCTTTCCATATACTAAATTTAGTAGATGTGCTATATTTGTAT
ATCTCGAATGAAAAGCTAGCGCATATAACGGTGCTTAGACATTGGTGTCAAAAATTCTGG
GAAAATCAACATACCTTGGTTGTTAGCTACATAGCCATATCCTGCAGTAGCAACTGATGC
TGGAGAATTTGCTGCAATAGTTGCAGGTGAAATTGACGAGCTGAATGGGGAATTTGCTGC
TCCATTGCCAGTGGTATTAACGGGAAACAAAGGCTGGGAAGCCTGAGGGGCAACAGGTGA
AGGAACCCCTGTGGTGACCATAGCATATGATGTCTGAAGTAAATTAACAGGTGCTGATGT
CATCATAGGATTGGGCATATTTTGAATGGGAAATAGTGGTTGCTGTGGTGCTTGCCCAGC
AATCATTGGGGGGACTGAAACCGCTGGTTGTTGAGCAAACCAAGGTTGCGGCTGCTGAAG
AGGCCAAATCGGAGGTCGGACCATCATTGCAGGATTATACCTGTGAAAAAACGAGAGAGA
AATTAGAAGTTGTTCCAAAAGGGGTGTCCACAATACGATTGCACACGCATATTCTAAGTA
AACTGGAACTAAAACTGTAGATAGAAGAAAAAGGATTGCATACATAGGCCGGGCTGCACC
ATAAGGCCGAGGAGGAAAAGGCATGCCTATCGGATAATTAGGCATGATAGGAGGTCTTAT
CGTCGGCACTTCTACTTTGGGCACCTTCGGTGAAGGTTCTTCCTCTGCATGTGGAACACA
CGTGAAAGGTCAAACAACATAGTATTGGAGGGAAATAACATGGCAAGCACTTACTTACAC
TGCCCGCCAATTTTTCTATAAAAAATAAACTACCCGCCAAAAAAAAAAGAGAATACACTG
CCCGCCAAAAAAAAAGAGAATACACTGCCCGCCAAAAAAAAAGTTCAGCACTTACATTTA
ATGGTTAATTAAAAAACTGCATATTGTACAGATATAACATGGCAAATTCAGCACTTAAAG
GGATGTTACGTTTAAAGGTTAACAACATGCTGTTGCAGGGAAATTACGTGGCAAGTAGAG
CACTTATAAGGAATCAAATGTATAGGTTAAACAGCATACTTATTGGAGAAATAACAAGGC
AAGTTCAGCACTTAAGGAATGTTATATGTAAAGGTTAAACAACATGCTATCGGAGGGAAA
CAATGTGGCAAGTTCAGCGCTACCGGAGACTACATGGCAAGATGCTATTGGATAGAAATA
ACTTGCTAAACTGAGCTCTTACGAGTGCAGGAGGGGGGTGGATGGATATTATGCTCAGGT
GTGAACCATGTTGGCTGTTTATATACGATATTAAAGGAAGGAATCCAGTAATTCCGAGCG
TGGTTAGCCATCGTCATAAGCAAAATTAACTAGATGACAGTAGCAGCGCTGCCATTCTGA
TTCTTCTACATCACAGTAACTAGAGCAAATACACTGGTCTATAGAGAAACAACAAAAAAC
CAGGGTGGAGAAAATAAGCAAGCTGCCGCGGTTACCTTCCCCGTAGTGGGCGGCGAGCAC
GTCCGAGGGGATCCCTTGCATGCCGAAGATCTCGATCTCGGTGGAGTCCCTCTCGGGCTT
GGCATTCGGAACCCTGCGGGCAAACAAAAACAGATTAGACACTAAGTTAATCAGAACCCC
ATCTACCGCGGCACGGATCCAATCGAGCACGGGGTAATCCCGAATCTGGGGTGATGTTAC
GGCAAGGAGGTGGCGCGGATCCGTGGGTAATAAGGGAGGGGATTGGAGGTGGTGCGCACT
TGGTGACGGACTCCTTGTGGACCTGGAGGACGTGGATGGCCATGCCGCCGGCGGTGGAGA
GCTTCTTGTGGCAGACGTGGCACTTGAAGTGCTTGGCCTTCTGGTGCTGCACCAGGATCT
TCTCGTCGTCGAACTCCCGGTCGCAGTAGTAGCAGAAGACCTTCTCCACCCGCTTCTTCT
TCTTCCCCATCCCCCGCCTCCCGCTTCCCCCGAGCCCTCTCCTCTCTGCCCCTCTCCGGC
GAGACGAGCGCGGGGGCTAGGGTTTCGTTCGGCGACGCCGCGGGTGGGAGGGAAGGAGGC
GGCGAGAGCACGCGAGTCCTCGGTGCGATTTGGGCCGAGGGGGGATGACGGGGTCGGGTG
GGAGAGACGGAGGGGGGCTTGTGTAAATATGGCGTGGTGCTTGGGTCCGGAGGCTGACGC
GTGGGGTCCCTTTGGGTTGCGCCTTTTTGCCTTGCGGACCCTTGAGTTTAGGTGTTTTGC
GGTCTGCGCCCTGCCCGTGCTCGTGACGCTGCGAGGGGGCGGGTTTGGGATGGGCCTGCT
CGCTCGTTCGTTCGTTGGAGCTGCTGGGCCACGTTGGGCCATCTTCGTCTGCACCGGGAT
TGGAATGTGCCGACCAATTCCTCTCTTCTTTGATTTGATTTGATTTGATTGATTGAAAGA
AGAGATCCACACGACGAGAGGTTTTATTTAGCCCTAGCATTCTGTTTGCCGGCATGAAAC
CTGGATAAAAGATGTGATTTGGAGACGGATTGATGACAACCTTTTCATGATGCGGCTCAT
GCTTCTTTAGAAATCAAGCTATGGACGAATATGATGGGTTTCAGAACTCTAGGACAGTCA
GTGATCCTTGACAACTTGCGATCCATGCACACGTACATAAGCTAATTGACATGGCAGAAT
TTATGAGGCTTCGTGATAAGATGAAAGTAAAGTATAAAATCAAGAGGTTGGTGTCAATAA
CGAAGGGGTTGGGGGCTGAGAAGGGGTGGTATCAAGTTAAGTAGGAAAATGTTGCCACTG
TTGTGTGTAAATTGTGGTTTAATCAACAATAGGCGTCAAGAATGTGGTAACCGCAAGCAT
GACGAGTCAAATTTTAAGTGGGGTAACTTCACCCTAGTGGCTGTCATAGAGGCGGAGGAC
GTGGCTCGGGCTATGGCCAGGGAAGGAATGCAAGAGGGAGAGCTAGAGGCTTTGACAAGA
ACACTGTAGTTGATGCAATTGTGGATTGTTTTGAGTACGGTAATAGGCGGTGCAAAACCT
CCCCAACACTCCAAATATAATGTAAATAAGAAGAAACAGAAAGGTGTTAACTCAAAGCAG
TGGGTGTGAACATTTCTATACCAAATTCGAACAGATCGACGGCTCCCAGCATGGGAGAGC
GTCGTGAATAAGGGAAATCTTAGCTTGGAAATCCTAGGGGCTTCGGAACACCTTGATGGT
TTGAGCCTTGTTGGGTGTCCATTGAGGTTGTAGCCTAGATGTGATGTTTTTTTGTCACAG
ACTCGTCTAGATAGTTATCCGACAGAGTGTTTGCGAAAAAGATTGAAGTTGGACCAAAAA
TTAGCTATCACTTAGACAACGTTGTCATTCTAATTCTTCTATATCTCGAAGAAGGAGGTT
AAAATCCAGAGATTAGATCTAAATCCAGAGGGCAATATGATGCATGCATGCATGCATGAC
TAGGAAAGCATTGCTAGCTGTTCTACTTTTGTTTTGTGTACGACGTGATTTCTGCGTATA
CATCTCTAGTTGACGCCCATCTTTTACAGTGGTCAACTTGGGCTGGGTCATTAACTCGTC
CGTTTACGCACGCTCTAGAAAACGAGCGAGACGCTCCCCTCTCTCTCTCCTCTCTCTCTC
TCTCCTCGCGCGACGAGCAGCTCCTCTTCCTGATGACTACCCTTGCACCAGCGCTAGGGT
TCTTGCGCAACCGCAGCACGGGAGCTCATAGTCATCGACCAGCCAGGCATCCTGCCGCTC
CGCCCCAAGGCTGCAACAATATTGTGCCCCCACAACACAGCAGGCCCGAACCCCAAAACC
TAGCTCCCTGACGTGGCCGCCCATCGCCGGCACTCCTTCGCCGACGTCCAAGTGAGAACC
AGTGCAACCTCGTCATCATTGTCGTCGATTATCCCCTCGTTGTTGCCACTGCCGCGCTCT
ACATCCGTCTCCAAGGTCTCGAAGATCAGCCCCTTCAATCGCTGCCTGTGGAGAGAGGAC
AGTCTCTCGATTCCAGTGCACCAGGCTCTAGGGGAGAGCCGTTGCCGCATGATTTTGCGT
CTCCCTATACATAAATTTGGCAGGGAATGATCGTAGATGCTGATGGCCTGGGAGGGCTGG
AAAGCCGCATAGTTTTAATGTCTCTAAATAGTAATAATGGAATTAGGTAATGAAAAAACT
TTTCCATCCATGATAATGAGGTTGGACTTTCTTGAAATAGCATGTGTGATGATGTGACAT
ATATACATATAATGATAAAAGCAAATAGTAGAGATCAACAACTTAGGTAATTTTTTTGTG
AATACACGTGGAGCTATCATTTATTGATAAAAAAGATAGTAAAAACACAATGGCGATCCT
CGTGATATGTGCACCACAAGGCGCATACACGAGGTCATAGTGAGCATGGGTGTGGGTTGC
TCAACCCCTTACATGTCAACTATCAGGTTACAAGGATGATTATACTAAACCCTGGAGCAC
CGACATTCGCACAAGTGCAAGCTTTCTTCTGGATGTTGCGAACCAGTTGGGTTTGAAACG
ATGTGGCACCATCGAAGATGCAACCGTTGTGGTACTTCCATATGGTCCAAGCTATGAGCG
TGATCAAGGATTGAGGCCCTTACGGTGGCTTGCGGGAGAATCCTGCAAAGCTAAAACCCA
CAAATTGTACAAGTCGATAGTTCCTCCGGACGATTGAATAGTGAGGCGACACGAGAGAAC
ACGTCGTGCCTAGTGGCAATAAACTAGGTATACATAATATGCTGCGGAAACAAGACCACT
CATTCTCAAAAAAGAAAAGGAAAAAATTCAAGAACCCTCAGGCCTTGTTTGGTACTAGGT
TTTTTTAGGGGATTGGTGGGGATAATCCCCACAGGGATTGGATGAAACCCCAACCTTCAC
CTAATCCCTTCAAATCCCATTTATCCCCATTCCACTAGGTAGGGGTAGTGTATTGGGTAT
TGAGAAA