morexGenes - Barley RNA-seq Database

Contig contig_41854
Source Contig contig_41854
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41854 (6000 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_41854

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57544	3	1481 bp	MLOC_57544.1	Available	Available	LOC_Os05g11910.1, FRAME:+3, EVALUE:0.0, 13105.m01290 protein GDSL-like lipase/acylhydrolase, putative, expressed
CDS Structure of MLOC_57544

Contig Sequence (6000 bp)

>contig_41854 6000 assembly3_WGSMorex_rbca.fasta
TGCTATACGGAGTTATTACGGTTTGAGGGTTCTAGTCTTTGCCCTTGTTTTTCAACCCTT
AAAAGTGCCAAAAAATGCCAATTCTCAACCCTTAAACTCGTTTGAGGTTTTAAGGATTTA
AGGGCACTACTAGTGATGCTCTAAGTCCACTCTCGTCCCCCATGTCGCCCTCCCTGACGA
CTCGGGGGGAACCTTAGATCGGGCGCCTCCACCCCCTTCCTACCCCCCCGGTTCGCTGCC
ACCCGAGGAGCGGTCAACGAAGCCTGCGCCAGCTCCAGTGAAGGTGGCGGCAGGCCCCCT
CCGTTTTCGTTGCTGCGGCACGTGGCGTGGGCGGGCCGACGAGGGCGCGGCGAGCGCGCG
GTGTGGGTGCGGTGTGCGCGAGGCGTGGGCACAGCGAGGCGGTCCGACGAAGGCGTGTCG
AGGCGCGAGGTGGCTGGGGCCATCGCGGCGACGCGTCTGGAGGTGGGTGTGCGGCGCCAG
CTATGGGCGGGGATGACCAGATCTCGGCCCTTCCTGGTCGTGGCGGGTGCATGCAGCGGT
GCAGACGCGGTGGCTGTGGATGGGTGGTGGTGGGTCTGCGGCGGTAGCTGCGGGCGGGGC
CGGTCAGATCTGGGGCCTTCCTAGGTGTGGCTGGTGTGTGCAGAGGTGTAGACGCGGTGG
TTGCGGGCAGGGCCGGCCAGTTCGAGGCCCTTCCTGGCCCGTGGCTGGTGCGAGTGGTGG
AGTTGACCGCAACGCGCAGGTCCTGAGTTGTCGGTGCTTCCGTCTTGCTCCGGTCTAGAT
ATGAGGAGGGGCAACTACAGATCTTCTGGTGAGTGCGTTTAGGGTGTTCTCCCTGACATA
GGCTTTGTAATTTCTCTGGATGAAAGTCCTGCTCTCTGTCGATGATGTCAGCACCCACGG
GTGTTATTTCCTTGTTGAAGGCCTCACCGAGGAGATCTTGCACCACTCTCGTCCTCGAGT
TCAGTCTCCGGGTGAAAACCAAGATCTACCTTGTTGGATCGGCGATGACGACGTCCTCGA
TGTCGTTTTTTGTTGTTGAAAGCATCGTTATGGAGATTTGACCTCTTGATGGAAGCACAT
GGTTTGCGGCAAGGTGTCCAGCACGGAGTTGGCGGTGGCGGGGTGATGATTGGGTCTGCG
GTGGCGTGTCCGATGAGGGCCGGCTGTTGGCCGGCGGTGTTTGGACACTTGAACATTGTT
GACTTGCAGGCAGTGTCAAACAAGCCATGTTGAATGTACTCTTGCCACCGAAACGGCACA
TGTTCGCTCCTTTATCGGATATGTCTTGTCTCTCCGGTGCTGACGATGTTGCTCGCATGC
TTGTGTTCCTTGACGCTCTTGTTTGCCATGTAGTACTTTAGGCCTAGTTTAGTTGGATGT
TATGTGTCCTTTGTAAAGGTTTTCGCCTGGTTTCCCTTTTATAAACCAAGCATTTTTCAG
CCATCATCAGCTCTTTCTTCTGCAATGGAATTTTAGCAGCTCTCCTGTTAATTTAAAAAA
AAAACTCTCACTTGTCATACATAAAAATTAAAGACGATGTACCCATCCGCAAAGCGGCTA
GCAGCAGAAAAGAAAAAAGATGCCAAAAGACTCGAAAACGCTTTACGTATCTGGCAATAT
CTCAAAGATGCGTACGTGATAGACTGCGCTGCAGTAGGGTGTCCCTAGTGAAGGGAAGAA
TATAGTTGGAAGCTGCAGCACGTCGCCCCCAGCAGCTACGACTAGCTAGCATGCAGCAGC
AGTCCACCGGGGAAAGCGACGTCCTAACGGGCGTCCTAGCCCGCCTATAAATCCCAACGG
ATCTCCCGGCCGTAACCACACACACACACGCCGTCTTCGTCGTCGTCTCGTCCGACCGCG
ACACGTAGTCACGTCGTACGCTGTTGAAACTTGATAGGATAGCTAGTGAGCCATGGCGAC
GATGAGAGCCGCGCTGCTTGGCACCGTGGTGCTGCTGTGCGCGCTCCGTCACGGCGGAGC
GCAGCGGTACGAGGCCATCTACAGCTTCGGCGACTCCATCTCCGACACTGGCAACCTCTG
CGTCGGCGGCTGCCCGTCGTGGCTCACCACGGGGCAGTCGCCCTATGGCGAGACCTTCTT
CAAACGCCCCACCGGCCGCTGTTCCGACGGCCGCGTCATCGTCGACTTCCTCGGTACCTA
CCTACTCCTCAATATATGTCCGATCATCGTAACCACGCGGCTTGATCGCACTGGCATGTG
AAAAAATTGGTACATATGTGCAACTGCAGCTGAGCACTTTGGGCTGCCGCTGCTGCCGGC
GTCCAAGGCCGGCGGCGACTTCAAGAAGGGCGCCAACATGGCGATCATCGGCGCCACCAC
CATGGACTTCAGCTTCTTCCAGTCCATCGGCCTCAGCGACAAGATCTGGAACAATGGCCC
CCTGGACACCCAGATCCAGTGGTTCCGGAAGCTCCTCCCGTCCGCCTGCGGCAAGGATTG
CAAGCGGCATCTTTCCAAGTCCCTCTTCGTGGTGGGCGAGTTCGGCGGCAACGACTACAA
CGCCGCGCTCTTCTCCGGCCGGACCATGGCCGACGTCAGGGGCTACGTGCCGCGGGTCGT
CAGCCATATCATCCGTGGCCTCGAGGTATATCGATCATCCGTGCCACGGGTTGTCATATC
ATGTGGTGGTGGTCATCTAACTAACACCGGACCGTGTTATTTTGTGCATGCGCAGACGAT
GATCAGAGTGGGCGCGATGGACATCGTGGTGCCGGGGGTGCTCCCCATCGGGTGCTTCCC
CATCTACCTCACCCTCTACGGGACCTCCAACGCCGGCGACTACGACGGCGACGGCTGCCT
CAAGAGCTACAACGAGCTCTCCGCCCACCACAACTCGCTGCTCCGGCGGAGCCTCGCCAA
CCTCCAGAGGACATACCCCCACACCAGGATCATGTACGCCGACTTCTACGCGCAGGTCAT
CCAGATGATCCGGGCCCCTCAGAATTTCGGTAAGTTGATGCAGTCTCTCATCCTTTAAAA
CCTTATTAGGTTATTATTACACCAAGCACACGGTGAAGAGTACACGCGCGCGCGTGAAGT
AGGAATATCCTGGTGTAAAGTTGTTGTGCCCGGCCAGGCATCCCTGTCCAGAGCAGCAAG
GCAAAAAACACCGTCTTTACTGCAGCACACCTCAACTTTTTGGTCATGTCATGTGCCGAG
TAGGTAGCTGGAATCCAGTTGCCGTGACAAAGTCGAAGTTTCGGTGATCACGACACTTGA
GTAAGTGTAGACAGCCAGGGCACACGGGGCCCATGCACGCACGGTTCATAGCCTAGCTAG
CAGCTACGTACGTACGCCACAGACATTTATCCAAAGTTGCGCCGCACCTTTGATTATGTA
GAGAGAAAGCTAGCTAGGTGCATGCATGCATGGACGATAAGCTTTGGAAAGTATGGACTC
CTGGATTCTTAGCCCACAGGCGACTCATTCGGCTAATTAGTGGTCGAATTGTATACGCTC
TAGGAAGGGACCATGACCTCTGTCTCTGTCCTGTCCATATAATTTGGCCTCTGTCTCTGT
CCTGTCCATATAATTTGGGAATCAATCCCCATCCATCTAGCTAGCAAACCAGTTGGCAAG
CATGCATGCCCATCTAGCTAACACATGCATGATCCAATTATTATTATGAAATGAGGAGCG
TGACAGTGTGTATATAATACTGTCGCTAAAGCACTGTACATGCATGTGACGAGCTCTTCT
TTCCATGTAGTAAAACGGCGTATAAATTTGACAGAGACTCAGAGAGATACTCCAAAAAAG
ACAGGCTCACAAAAACAATACTCCTACTAGCAGCCCATGTTCATGATACCGTGCACGATC
TCATCCGCCACGGTTATATGATCGTCTCCTCATGGCCATCACCACATAGTTCACGTGACA
AAGCGATCGCGATCATATTAATTACATACTCCATATATAACACAATACTTGTCTTAGAAA
GAACTAGCCTAGTTCTTACCAACAAGTATTTAAAAATAGAGGTAGTCGAAGTTAAAAAAT
GAAGAACAAGGGTGGTATAATAAAGATCGGTTTGGTATGTGTGGGTTTCAGGCCTCAAGT
ATGGGCTGAAGGTGTGCTGCGGAGCCGGCGGGCAGGGCAAGTACAACTACAACAACAAGG
CGAGGTGCGGCATGGCCGGGGCGAGCGCCTGCTCTGACCCGCACAACTACCTCATCTGGG
ACGGCATCCATCTCACCGAGGCGGCGTACCGCTCCATCGCCAACGGCTGGCTCAAGGGCC
CTTACTGCAGCCCCCGCATCTTGCACTGATCATCCGTAGGCTCTAATGTTGATTTACGTA
TTATTGTTTTATTTATTGACTTGATGCGTTTTGTGAGTGTGCGTGGTGGGATCGATCGAT
GCGTCATGTCTATGTGTGGATGTAACAACTAATATGATGAATTTTATGGGGGTAATTAAT
CAGGTTGCCTCCACAGAATAAATAAAACTGTAGATGTGTTGTTTGAGATTTTTTAAGAAA
GGGCAAAAGACTTGTCTCATTCATTAATTAAGAGGGAAATGAGTAGAAAGTTTGTGTTAC
AACGCTCATTGTGTTACAACATCAATACAAAAGGTCTACTCTCGTGGCATGATGGATCCC
AATTTTTTTGCATCCACGGTGACCCATGTTTGTGTCTCAATCTTGATGTTAGCAAGTAGA
ACAGTCGGTGGGGCACTTTTGAGATGAAAGATGTGAACGTTCCTTTCATTACAGATTGTT
CAAGAGATGAGCATGGAGAGTGTGGCCATGGCCTTCCTGTTTGGAACGGTAGAGATGGAA
ATCCCTATCCATCACTCCTCGGTCGAACGTGACAAGTGCCAAGTAGAAGTGTTGATGTTC
TTTAGTTGGAGCCAATCTTTGATCATTCCCCAAAGTCTAGTAGCTAGTGTACTGGCATTG
AAAGAGGAAGTAGTCGATTGATTCTTGCACGCGCTTACATATTGGGCAAAGCCCACAATT
AGGCCATCCCCACTTGGCCAAGCGGTCAACAGTCAAGCCCAAAGGAGGAGCTTGTTTGAG
ATTCTTATTTATCTGTAAGTTGAGGAAATTGCTTCGAGCCCCCTTGATTATCTAGACTGG
GGAAATAAATTCAAGGAGTTCAGCATTTCCCTTGCTATGCTTTGCAAGTTCATCTTGAGC
TTGATTTTATTTTTAACACAGCTACACATCCATACATATATTTATCCTTATAAACGTATG
CATGCGCATCGCATCTCTATGAATAATTTTGAAAGGCTAAGAGCATCTATAGTCGGGCGC
CCCAAATTGGTCTCAAATGCCTGGGCAGCCCGCCAGGTCACTCATCGGTCATGATTTTTT
GACTCAGGCATACGTCTCAAATGACCCTCAAAAGCCCGGGCTGACCGACACCCTCATATC
CAACCCAAATATGAGACGGATATGGGGTAGCCCGGGCACGTCCGGGCGTGTGCCTGACAA
GCCTGGCCCACCATCGACCCCACACTTGTCCCACAAAATACCCCCATCCGGCTCATTGAT
ACGCCTCAAATCTATCCACTTTTTCAAACACTTTTGCTCTGAATTTTCCCTCTAATTTGT
ATGATTTTAACGGAACTAACCCAAACTAACGTTGTTTTCAGTAGAACTACCATGGTGTAA
TTTTGTGAAGAAATAAAAGTTCTCGGAATCGGACGAAACTTTTTGTGAATTATTCCTGAA
GTATATGAGGAATAATGGAGCGAAGAAATACTAGAGGGGGATGCCTATGGGCCACAAACC
ATCATGGCGCCCCCCGGGGTGCGCCGTGATAGCTTGTGGGGCCCATGTGGCTTCCCCGAC
CCTAATTCTAGTCTTATAAATTCACATCTTCACAGATAAAAAATCAGAGAGAAGATTTCA
TCGCGTTTTATGAGACGAAGCCGCCACCTCCTCATGTTCTTCCTCAAGAGGGTTGATATG
GAGCCCATTTTGGGCTCCGGAGAGGGGAATTCCTCGTCGTCGTCATCACCAACCCTTCCC