Map Locations of contig_41850 (10770 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41850

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57538 4 3074 bp MLOC_57538.2 Available Available LOC_Os03g19570.1, FRAME:-2, EVALUE:0.0, 13103.m02343 protein fip1 motif family protein, expressed
MLOC_57539 2 1605 bp AK364329 Available Available None
MLOC_57537 1 768 bp MLOC_57537.1 Available Available None





CDS Structure of MLOC_57538






CDS Structure of MLOC_57539






CDS Structure of MLOC_57537






Contig Sequence (10770 bp)

>contig_41850 10770 assembly3_WGSMorex_rbca.fasta
CGATCCCCTCCTTCCCCTACAACCTCCGGCCAAGACCCGGTAGAACCCTAGTTTCTACCA
CTGGGACACAAGAATTATCAGCAATTTAGTATTGACAGTTAAGATTCTACAATGATGGCC
ATGTTAATAAAGCACCAGAAATAGGCATACAAAATAGGCATACAGAGAGAAAAATAAGTC
CATTATAAACCCTTTAGTTTGATGTGTGCTCATACTTCCAATCCCTGAATTCAGGTTCCT
AATCCGAACCAACTTAGACAGCTTGTTTGGCACACAGGGAAAAGTGTGATGCTTGCCAAA
CATTGAATCCCAAACATTTACTCGTGGATACACTATGTCCTCTCCTTGCTCATCCCCCTC
CCTTAATCAATCGCACGATTCTGCACTTGTAGTGCCACCTCGATGTGAGAATGATGCTAC
CACCGCCATTGTGGCCTTGAGTGCCACTTAACATGAGCTCCACCCCGAGAAACGTCACAG
GTGGACTCTGCTCACTGACCCCACCCACTTTTTTGGCATCCCTCACTTCAGCTGGTGGCA
TGAGAAGAAAAGGAGAAAAGTACAGAGTGTAGGTGGTGTGGGAAGATAGGGACAGTGTTG
TTATTCTCTTCAGGAAAACTGACATGCAAGGCTGACCAAATCCGGTCTACTGGGCACTAA
TGGGCTCCAATCCAGCTAAACACCCAAAAAAGAAGTAAGGGATTGGTTTATCAGGTTCGG
GGTTACACATTCTGAGCTTTAGACTCCGGGGTAGAAATTCTGGGCTTAAGATTCAGGGTT
CATTTCAAACTGAACAATGAACTTCAGGGTTTAAATGGACTGTTTACTAAACAACAATAA
TTGTCAATTTTCTAGTAGTTACCTGGGTCCATCGAACATCTGATGAGATAATATCGCAAT
ATAGTACACAGAAGTTACAGATAAAACTTGGCAAACGGACAACGCAGTCTAAGAGAAATA
TATTCCTATCCTATTCTTCAGCAATCAGTAGGCTTACTTAAGAAATAATATCTAATTGCT
TAACCATCCATGTGTCTTTTTACCCTGATGGGGAAAACCAATTGAGCTGGACGAGCTATT
GTGGGTGTTCCCCATTTACACCTAATTAATCTCAACTGGGGGGATCCAGAAGGTATATGT
ACACCTCACCACAAGCAGTAACCGGGAATATTCACAAAAATAACTAGTACAAATAAATCA
TGTACGTAAGAGAAAAGGCGATTATTCCAATGAACTACTAAAAGTATATGAGAAGGACAG
CAGAAAAATTCCTAGAATACAAAAAAATGAAATGATAGAAGAGAAGACACAGCCTGGACT
GAGCTCATCTTGGTGTATCAAATTAAACGTGCAGCAAAACATAGAATATTTCAAGAAAAT
AGCCATCCTATTGAGCATCTAATTTTGACCTATATGATTTTAAAATTAACACCAAAAGGA
ACGTCAATACCACACCATGTCAGGAAACCCCTTTTCTCTCAGCATGTCATGTTAGAACTT
AAAGCCCAAGCTTTCATATACATCAGCGCACACTTCAGAGATTTCATTGAAGTTATTTTC
CAATAATAAACTCGATTAGTTTGACTGTAATCTGGCTCAATCAAAATATCAGAACATGAT
AATCACAGCATGATACATGAATTTCCAGTCAGTAATCAGTGTGCACTGGAACCTGCCATG
GATTGATGATATGTAGCATAATCATTTGAATCTTGTTAGAATCCGAATTTGAGAATCTAG
CAAGAAAAAACTAAATGTATTCTCATGTTATTGATATACTTGACAAATGAAACCAATCGG
CATTATAGCAATGTGTGGTTTATGTTAGCTCAGACCTTATTGGGTTACAATAGATTTATA
CATTAAGTAACGGTGTACTTAAGTGTAATTAAACATCATATAAAACCCTTGGGAGATAAA
ATCATGTGGCATTAAATAAAGATGCTAGTGAGGGCACTTGTATGAACAGGATAGTTACAA
GTGGGTGCCTTTGTACTGATACAATGACACATAGTCAATCTACCCCTATAGGATAGTAAA
TGATATTTGTCAAACGAATCGACAACAGAAAAATTAACAGGGATATGCCAGGTCATAGTA
AAAGGGTTAGGCCAAAGTAAAGTACAATACAAGTTTAAAAGGCTATCCACTTGAATATTG
AATGTGCAGTAAGAGCTCAACAGAGAGCAAGGTAAGATTAAACCATAATAATCTCCAAAT
GTCACCAAAACTACCAACAGTTCGGTTATTAAGATCTGAGAGAATATCCAAAGTAAAATG
TCTGAAGTCATGTAAGAATCGAACAATGTCTCACCTCAGGCCTCAGAGCAGAAATGGAAA
TTGATTTTAGATTATCTTTTATGGGAAAAAATATATATAAATCGTACAGTAATCAATCCC
CAAGAAGAAATGAATTTGCGATCAGTTCAATGGTTATTGTAAGTTAATTGGAAATGTCAA
GCTGGAAATTAGTTGTAGTACATTTTACGGCCAGACGTACAAACCAGGTATAATATGCTC
ATGATGAAAGTAAGTAGACAGGGGGGAAACTGTCACTTTCTTGAGCTTGGATCTATTAAA
TTTCAAATACTTGACATGAACAAGATAGTCAAAAAGTTCAAAGCACTAGTATGCTGACAT
TAGGTCCTTGGCACACATTGGATACCAAAGACTTCAGAAGCAACGACAATGTTACATATT
GACAGCACACACTAGGTCACTGTTATTTTAAAAAAAAACTACCAGCCAACACAGAACACA
CACACTCACACACACAAACATTATCACACAAAAATAGCACAAATGTACAGCACATAGCCC
TCTATAACTGTATTCAAAAAATCTATATAAATTGCTTGCTAAGCAACCTAGCATGCATTC
ATACAAGAACACAATCTACAATGTACGAATGCGCAGAACTTTAACCCATGTAATCACTAT
CACTGTGTTGGCACATCAGGAAATTGTGTATCTTCATGTGCATACCATGTCCTGCCACTG
TCAAATCCAAGTACTGTGACTGACTAGAAGCAGAGGATTCCAGGCATCATATATGTTCAA
GATACTATAGCAGAAGAGAAATTGGCATTTCATTGACCATGTACGACAGTGGTGCAAATT
AATTCAATCACTCATTGGAGATAAGTATGCAAATGCCAGAGCAGGGAGCAGGCTATAATC
TCAGCAGTGGAAAAGAAGCTAACACTAGCTTGTGAGAGTACATTAAAGTGTGAGAAGATT
ATTAAACAGCAGGAGAATAGCATCAGATATTGTTAAGTGTGTGTCCACGGCTATCCTCTA
GAGACTAGTTATCCCAATACACGCCCAAGTTTAGAAATATCAAAACATAGTTCAAAATGT
TGATAATAAGACTAATATGGACAAACGCTAACCCGTTCATCCGCAAAAAAAGAAACGCCA
ACCCGTAAACAACAAAAATCCAGAATCCTGTTGTCAAGTTATTTCAGGCCTTCTTTACAG
ACAAGAAGCAACTATATCTGGCCGATGCCCAAGTTGGTTCAAAATTGACACAAAACTTTG
GTAGGATCTCACCAGAGGCCAGACCATCTAAAGAAACGGCTTACCAAAGGAGCATATGCA
TTGTTCTGGAAGTGCGTAAATGCCCCTAAAAGATAAACACATAAATTTCAAAGAAAACTG
AGGACTTGCAAATTCCACCACCATACTGAGCTATGTACAATTCAGTTTTGAGCAGCATAA
AGCCCCACTCCCTTTCTTCCCTTTCTATGTGCACATGTATACTGGTTGAAATCACCCTCT
TGCCACAATAAGAACTTAAGGGAAAAGATATATTGAATATTATATATGTGTACAACGTTT
CTGATTTTATCTCCTCAAAGTTTACCTTTCTTTTCCTATCATTCAAGCCGATGCTATCTG
CGTCCTTGGGCTGAATATTCATGTGCTCATGCCTTCTTTCATCGTGAATGTTTGAAATAG
TATCACTATTTCTCATATCACTGAAACTATAAATAGCTTCTCTAACAGTTTCCTTTGGAG
AATTGTGCATCTCCACAGCATAAAGCTTCCTATCACCGATCATGAATTGGTCATGCTTCA
GTCTTCTCCCTTTTGAAATTGCTATACCGAGATCTTTATGGCTAATTGAACCCAGACCAG
CATGGAACTTCCTCTTGACTGGAAGAATACAATAACCAGTCTCAGAGGGCGCATCAGTGA
ATGAAACAGATTGTTGAATGTTGTCAACGTGAACTGAAGAATTATGGTGCTTGTTATTTT
GATAGTATTCATCACGATGATATTGCATGAATTTGGCATTTCGACTGTTTCTTGAGCTCA
AGGAAGTTAAACCAGGAGAAGACCAGTTCCTCTCAGGATTCTTGGGGTAGTCATTTGCCC
GAGGAGGCAAAATGAGGTGGTAAGGATGTCTCCAATGTTCATCACTGCTTTCTGCAGATC
TTCTGCTTTGGTACTTTCGTCTAACCTCAGGTCCACAGAACTCACCAAATCGGTAGTCAT
TGTAATCGAATAGTTCATCATCCTCACCGTGGCCATGTCGGACTCTTCTAGTTTCCTGGT
AATAACTTTCTCTATACATGTGCCTATCAATGTCATCAGAAAGCTCAGCCTTTTGTACAG
ACTTGTATCCATATCCGTGATCATGGCGTCGCTGCCACCCTTTGGCTAATGAGAGCCTCT
GCAGATCATCTTGGTCATCATTGCATTCATGCCAAGAAAAACGGTCGCGATGATGGTTAG
AGCTAGTACTAAAGCGATGCACGCCATTTCTCAAAGCTGCTCTTTCAGCAGGTGAATAAT
CACGTCTTTCATAAACCTCATTGTGAACAGCATTGCGGCAATCATTACCAAGGAAAGTGG
AGCTAGATCTTTTCTCTTCATGCTTTCTATCATACCTGCTAGTATAGCTATATGCCATTT
TTTCTTCCTTCTCAAACACATCATACCTTACACGAGCTGAACCTTTCCGCTTCTTTTCTT
TTCTTCCTTGATGCCTATATTTAAGGAGACGGTAATCACTTTGACGATTCATAAATACTC
CACTCGACATGAAATCAGGTTCATCTGTCTCGTCATATCTATCGTCAGCAGGAGAGGGGG
TATAGCTATGACTGTCGCCCTTGGCACTTTCTTGGTCTGATTTACTTGAATGGCGGCAAA
AATCAGACCTGACATACGCATCCTTAAGCTTGGTATCTGAACAAGTAGCCTTGGAATTTG
GATGTCTATTAGCTCTCTTAAAGTAGCAATCTTCTGTTGATTCTTCAGAAACCATGTCAG
AATAACGAGGACTAGAAAAATGGTCCCTTGCAGAAGCTGAGTCTCTCGTATCCAGTTTGC
TCCCAGTACACTCTGAGAAACATCCATTAAGCACTTCCTTATGAATTACCTTGTCCACCA
GATGGTTAGTGTCTGTCAAACACTTGACACTAGGATCATTAACCAATACTCTGCATTCAT
TGTGATTAAGAACACGGTTAGCTCAGCAATCATTTTGCGAAATACAAGCATAACCTTCTC
AAAATAACAGGGACATGTAGTTCCGACTCTGCATACCTTTCAGTAGTCATGCACTTGTCA
TTTACTGTTGAGTTGTCATCAGAAGTGGAGTGATTTGAAGGCGAAAGCATCATGTTTACC
TGTACAATCAGAATAACTTGTAAGAAGATATAAATCAGGTGATATAGTGGCAACATATTA
GACACCTTGATGAAACATACTTGTATCACAACATCAGAATCTCTTTTTCTTGGACGCCAC
ATATCTGCTGACGGAAGACGTTCAAACAGACCACCTTGAACGTCGATTGCTCTACCCTTT
GGCTAGATGTGCAGTATTAAGTTAGCTCTCATAGACTGAACATAATTCATGGAATGATTC
CACCACAAGAAAAGTTAACTTCATATTACCTTGTCAACGTCATTACTTCCTTCAAATCCA
GAATAAATTGCTGACCTTGGCATTAGCTTACTAGATTCAAGATTGTGATGTGATTCCTGT
ATGCAGAGATGTGTAAGAGAATTCTTAATAAGCACACAGGCAAACCTTCAAGGCTATGTC
TCACCTGATCCATTCCTGACGATTTTTCTGCAAGTGATCTGGCTCGCTGTGTGAACTGTT
TCTACAGGAAAAAAACAGTTACGTTTATCTACCACAAGTTCTCAAATTATAAGGTCCCAA
CACAAATGTGAAGAACAAATGGGTCATGAACCCTACCATGCCAAAACAATATTTTCTCCA
TCCTTCTTCATCCAGACCAAAATTGAAGTAATCAGTAATATCTATACCATGCTGTCTCCA
AGGCTTCTGCTGAAATGCTTCAATGTTTATGTCGAAAACTGTCCTGAAATCATAGAAGAA
CGGTCGAATAAGCAAGCAAGTGGAACGACATATCCTAATTATGATAGAAAGGCATAACCA
CAGACCGGCCAATTCATTGCAGCCAATTAGCGATAATAAATAAGCAAGCAACAATGTCTA
ATCGTGAAACAAAGCCATAAGTACTTGTATCACTATCGAAGTGAGAACGTGAGTAAGTTC
TGTGTTATACAATTCTAAGGAACATCTATTTTGTGCTAGAATGAGAGAAGGGAGCATACC
TGTTTCTTGGCAAGAAAAAATAATAATCCTTCTGAAATGCATGCTGGTGACCTAGATCAC
CTTGTCCTGTGGTTGGCACTGTTGTTTTGTCAAGAGGTCCCTTGTAGTGGAGACCATGAG
GCTGGAAATCACAATTACATGGGAAACACCATATCATTCCTCGAAATTAGTTATATAATT
CGTTAAATTCACAAAATAGCAATTCCAAGCTACTACATGCTAATGTATCAGAAGTCAGAA
CAATAGAATTTGGGCCATAATAAGTGCATCATAAAGTCTCAATTATTTTTAACTAGTAGA
AGAGCAAAAAATAGCTATTGTTTCCACGAATTTGACACTAACAATAGAATTTAGGATGCA
TAGTCAGTGCATCATAAAGTCCCAATTAACTAGTAGAAGAGCAAAAAAATAGCTATTGTT
TCGACAAATTTGACACTAGCAAGCAGCGATTTTCACAAATTCGCGAAGCATACCTTGCGC
TGTCCGCCGTCCTTAGCAGATAGACCCTTCAAGAGGCTGGCCCGAAGTTCCCCCTCCTCG
CTCTGCTCCGCCCACCCCTCCTCGCACCGGCCGGCAGAAGGAGGCGGCGGCGCGCAGCCG
TCCTCGTTGAGCACGATGTGGAGGTCATCCTCGCTTTCCTCGTCGCTGCTGCTATAGCCC
GCGAGCCCGTCCCCCAAATCAACAGCCTCGATGGCGTCGGCCTCGGCGTCGGTGGCCGGG
TCGGAATCCTTGGCGTTGGAGCCGCCGCTCTCCCCAGCGGCGGCCAGCGCGGCGGTCACC
TGGTCATCGAGGTCGGCGTAGAGATCGTCGACGTCGTCATCGTTCGCCGGTGCTGTGGCA
GCGTCCGCTGGGTCGGCCATGGAGGAGCACATGGAGGCACGAATTGGCGCTGCTAACCGG
AACCGCTAAGCCATTGGTGAGCCGTGACGCAGGTTGCGCAAAAACCTTGGGAGAGGCTAA
GCGTAAAACCCTAGCAACTAGATTCTCACGGGCCGGTGATGGGACCAGCATACTGTAGCT
TCCAGAGGTTGGTTCTCGCGGCCCGCAGACGGTTTAGATTTCTTCTTCTTCTTCTTTCTT
TGGGCCCTAATATGAACGTCAGAGAAAAATTCAAGTGAGAGATCGCTGTCTCATTTTTTT
ACTTCTTTTTTGCGAAAGCTAGACTGCCAGATTATAATGTCTGACAGTATGCACTGACTA
TGCATCATTTACAGAAAATAAAAAATGGGCAACGGTATGCACTTTGCCAAATTGGCTTGT
CGTACTTCCCGGATGAGTACCAAATCTCTCTATTTTCCCACAAAAAAAATAGTGACTGCC
AGTATACACCGAAATACATCATTTACAGAAAATGTACCATGCACGTTACAATCAAAACCG
GCTGCGTGTACTGTGTATTTTATGTGTTCTACACTACTCCCGGGAGTAGATTATCCCGAC
GCAACTATACTCAGGAATCCTCTGTCCAAGTGTGAAAGGATCTTACAAACCCATTAGCCT
CACATACGGATGCCGTGGGTCATGAAATGCTGGCACGCAATCGAATTATTTCCTGCATCC
AAACTAGATCTCTGCAAGCTGTGTAAATTGGACGCCACTCTTGTTCTTCGAAGCTGAGTA
GCCCACAAAGATGGACACGCAAACGGCCACCACTGAAAGGAGCAAGGCGAAGGCGGTCCC
AGCATCCCAGGAACGATTAGGGGCTGGGCGGTATCGAGCAGCTTCCAATGAGGGCTGTAT
GTCCAGAGTCAACCAGTCGCAGCTGGCTGAGTAATGCTGGGAGTTGCTCCATGGTTTGCC
GTCAGTTGGGTACCAGAAAGCTACTGCCATATTGCTGGGCTCACCTATTGTGAACTGCGC
ATCCTGCATAGCCAAAGAAATATTTTAAGTGCCAAACAGATTTAGTAATCAAAGGTATGT
TTAACAATTTGAAAGGCTTGCAATTGAGACATATTAACCGTGTCATAAGGTTAGTTTAAT
GGGTTGTGTGTCCTAAGTGTACCATGGCAATAACCGTGTCATAAGGTGCGTGTATCTTAT
AGTACTCCCTTCATCCTAAAATAAGTGTCGCAGATTTAGTACTACGTTAGTACAAATTTT
ATACTAGATTAACGACACTTATTTTGGGACAGATGGTGTACAAACCAGACATCTACGAAA
TCACCCAACTACAGGAATGTTGCATGTACGCAGCTTCCTTAGCAAGGCTGACAAATTGCA
GATCTAGTTGTCGAAGGAACAGAAATACAATGGTATGAATGTTTCTTGACACTGTAAGTT
GATTTCTAGGCATGTCCCTGGGTATGCTGGTTTTCATGTACTCCCTCCGTTCCTAAATAT
AAGTCTTTTTAGAAATTCCACTACGGACTACATACGGATGTANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATTTTGCTCTGTATGTAGTCTGTAGTGGAATCTCTAAAAGGACTTAT
ATTTAGGAACAGAGGGAGTATTAGTGTGGAAAATAATGGAATAAAATAATCCCTCCGTCC
CATAATATAGGAGCGTGTTTGGCACTAGTGTAGTGTCAAAAACGCTCTTATATTCTGGGA
CGGGGGGAGTAGTAGATAGACACCTGCTGAAACTGGTCCATTGTTCTTAGGGGCCTTGAG
AACTCAAAGTAATATGTGCCCTTGTCATCTTTCTTTCCATAAGGACTGTCATCATCCACA
AAACCTGAAGAGTTCACATGACAGTAAAATGATTTAGTTCTACTTGGCGGATTTGCCTTG
TAATCAATTTTACGCTATCTAAGGACCCAAAAAAGTGGAATGTTCCAGAGATAATGTTTC
ATATGCTGTCAATTGAAGCTCATTAAGTAGCACGCAAATTAGCAGGAAGAGGATGTGGGC
ATTAAGAAAGATGAGAACATGTCCTCCTTGTGTACTTATTTGCTTCTGCACAGACGTGCA
TTTCTTAGCTTCTACGAGAAACCATTTGGTAAAGAATGCACGATTAGATATCATGAGACC
AAGGGCAAAATGTGAATGTAGTGATGATATTCAATGACTTACCTGAATGGAATGTCAGGG
AACTGTGCCACCAAGCCCCATGCCAATCATTTTGAGCATTTGAATTATTTTCTGAAATGC
AAAACATTATGCAAGGTTGTCACAGAATGTTAATGCACAAAAAAAATGAAAATGCATGTA
ATATCATTAAAAAAATCAAATAAAAAATATGAGAATTTCTTTGTGTCAAATAGCAGAGAG
TACCTTTAGGGCCTATACCATCAAGGTAGCGGCAATGGGGATTCCATGCATAGACATCAA
CAAGATGACCAAATCTACACGAATTAAGTATTTCAACATCAAACCTTCACATGCTACTAT
GCATAACTATACAACTACCATGAGAGACACATTAGAATTACCTATCACCTCCATTTCCAG
CTACATTATCTATGTGATTACCACCATAAAGACGTCCAGGAATAGCATTTCCAACTGAAA
AGTGCATAATGTCGACCTCATGATCTCTGCAACTTTTGCTCGTGCATGAACCTGGCAAAT
CTTTGCACCCACCCATCTAAAAAAGCAAATAGCCCCAATTTTGAGATACGTGTAAGTGTG
TAACAATAGTGCAAAAAAAGTAAGATAACATCATGCATAGTACAGGAAGAAATAAAGCTA
ACTATTTTTAACATTCAACAGTACTAAGAGCATCTCCAACATGCGCGCTTCGACCGGCGC
CCAAAAAACTGATTTACAGCGCGCGGTTAGCTTTTTTTAGGACGCCGACGAGCGCCGGCT
CCAGCGGTCGCAGCATATTTAGCGCGCGTGCGGCGCTCCAGCAGCCGCTGCAAATAACAC
CCAAAACTTGTCCAACACGCATATATTTCATTGTTGTCGTATAGATAAAACATATAGATA
ATATAGATAATATATTACATATAGATAATAAAACATAGATAATATAGACAACATAGATAA
TAAAACTAGTTCAACACATAGATAATAACTAGTTCAACACATAGATAATAAAACTAGCAT
ATATAGATAAAACTACTCCGAGTCGTCACTGTGGGTACTGTCCGAGGTAGATAGAAATGC
GTCCTCCCAACGTTCATCGTCGGAAGTGAAGATGGACGGCAAACCGCTTTGGACGGCCCC
GCACTGCGATATAGCGAGTAACATGCGCCG