Map Locations of contig_41842 (5862 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_41842

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57531 3 1906 bp AK357695 Available Available None
MLOC_57530 1 708 bp MLOC_57530.1 Available Available None





CDS Structure of MLOC_57531






CDS Structure of MLOC_57530






Contig Sequence (5862 bp)

>contig_41842 5862 assembly3_WGSMorex_rbca.fasta
CCGGTAGAGATTTTGATGGATGTGTAGACTTTAGACTACCTTATACACGAGCCGCTGGAG
GCGCTTTTTCACCTTTGGTAGTCTATATTTGGTTTAAACTACCACATACACTAGCCACTA
GAGATGCTCTAAGAGTCGCGTTCTTCTTCTTGCCATGGTTGAAGCAGTTGCCGCTGATGC
GATTGCACATCGCCATTTTTTGTTATACAGAATGCTTGCTGATTCAGAGAAAAATACAAC
CAATCAATGAATCAATGATGCTAATCATAAAATAGACCGTCAAGTTGGCTATCTCCCGAT
GGATTTCTTGGATGCATGCATCGATGCATGCTCGTATTTTCCATGGACGGTGTGCCAGAG
CAGGCCGATGGCCAGGAGCAGGCTGCATGCCGACTGTGAGTCGGGACATGGCAGAGGGCC
ACGCCGGGTTGTCTTATTTTCCTCGGTTATCGTGAGGGCGAGTGTGTCGCGGTAGTTGGT
GCCGAGGACGCTGCCGTGCGACGGAGACTGGCGTTGTGAGCCGGTGTTGCGCTGTTGTCG
GGTGTGAAGTCCGGCACCGCTGCCTCCGTTGCAAGAGAAAATTTGTCCATGATCTTCTCT
GTTTTAGCCTATCTTTTTAATGGAGAGCAAAGTACTTGATAACGTGTTAGAGTAAAACGA
GATTGAATGAAAGTGAATGGACTATTAGTCCTGATTTGTATTGATTCTCAAGTATATATA
CATCTGGAAGAGATGGAAAGAAGATGTGTCTGTTCGGAGGCATCCCTCCAGAACAAGTGT
CTGTTGACAATAGAGAGAGAAGAGACATGACTTTTCGGGGTTGGACACCCTTTCCTAATT
AATTTCTAACATAAACAAAGCGCCTCTGAAATTCAATTCAAGATTTTCCTTTGGTTGTTG
CTGAAAAATAACATCCTGACAAAAGACGACTTGACTAGAAAAGCATGAACAAGAAATGAG
CAATGTCAATTTTGCTCATATGGGGCTGGACCTCTTCCTTTCAGTGAAGCAATGCAAGTT
GATGCTTTGTTTCGATATCAGTTTCCTGCTGATCCTGTCAGTGTTATTTTTACGATGTGT
AATTATACCAACTCTTGGGCAATATTGCAATATGGGATTCGAGACGTTTTTGTCCACAAG
CATGGATCAGCGCTGACCACAGGAAGGATTACAGGATGGTGATGAGGCTTTGTTTGCCTT
AGTTCTGTTGACGATGTTTTGTAGTTACTACATCGTATTCTGCCTGCTTTGGTATGATAT
GCCTGCTACAAGTTTTCCTTATCTCTGAGTTTTTTTACGGTGTTTTGCATTTTCAGTATG
TGATTTGGTTTTCTTTTCCTTACTTTTCAGTGTTTGAATTTGTATTTTGTGGCGGTCTGG
AATCCAATGTTTCACAACAACAGAAAATAGGTATGCAAAAATGAACTTCAGTAGGCACCG
CCAACAACGATCCATCGCCCACATGTAAAACGGTTGCTCCAGACATGAATATCACCGTGT
TGTGTATGCACGTTAAAGCTTGTAAGCAATCTTGCAAAGCACAGAATTACAGGCCGAAAT
CAGAATGGAGACGTAGGGCCTGTTTGGTTCATGACTAACTTTGCCACAACTAACCTTACG
TAAAGTGTGGCTGCCATAAAAAGTGTGGCTAACAAAATGGACACCACAAGTGTGGCAAGA
TTTGACAAAAAATTAGTGTACGACATGTGAACCATATAACTAGAAAAGTGTGGCAAGCCA
CAAATGTGGCAATGAACCAAACACATGCCTAAGGTATTGTGACATGACTAAGGTTAGGCG
TGGCAACCTTAGGCTGGAAACCAAACAGCCCCGTAGTGACAGTACAGCACTAGAGCTCCA
CAATGATCTGGTGCAAACAGAGTTTTTGGTCGCATGATGGCGCAAACAGTAGAGCAACTT
CTGAACATCCAAAGGGTAATCAGTCACCATTCCAGAGCATATTCGAAAGAGACTACCCAA
TAAGAGAGAGAGAGCCAAAACACTTCATGGAATGCCAAAACACTCCAGTTTCGATCCAGC
AAGATATAATTACCACCCTGTCATCCATCTACCAAGCGACAGATACCATATGTATTAACC
CCTGCTAAGACACCCTTCGTTAGGACAAGATTTCTGCTAGTCCCTAACAGCATGAACACC
TAGATTTTAGGGGGGATTTTGATTTTCTGTCATGTTTACAATGGAAAGCAGATATTATTT
ATATTGTCCCAAAAATGAAGTGTTGCAGTGATCAGTGTAATGGTGACTGTACATAGTTGC
AAATGGTATGCAGAATCGATCGACAAAGCATCAACCGACGATGGCCATGACGTGGCTGAC
TAAGAGGCTAAGAAAAATAATTTTGGTTACTTTTACAGTTATATAGGATGAATGCATGTA
CGGCCCATAAATGAATTCTTAAGCAAGCTGACCTGTTTGTAAATAAGTTCTTAAGCAGCC
TTGGAAGTTATGCACAGAAACAGTGCACTTCATCCAGTTTGCAGTACATTAAATCAAGAT
TGCCAACTTAACTACTCCCTCTGCCCCGTAATGTAAGACGCTTTTTGACATCACTCTAGT
GTTAGAAAATGTCCTACATTGTGGGACGGAGGGAGTAAATGAATATCAATACTAGAAAAT
CATTCATCTAGTGAAGTCAAAGGGACGGTTTAGTTCATCATGACATCTAACATCCCAAAT
ACATGCGTTTAACTTTTCTAGCCGGGAGGTAGCCATACAGATTTGAATTAACAGATAAAA
TTATTGCTGCTCATAGTTGTATTAAAATAATGACTAAAGCCCATGTGAATTTCAGCAAAA
CAAGGATCCAAGCTGTCCAGTCAATCTAAATAGCGCATGCATACGTCAATGATCTTAGGA
CAAATAAATTTCATTATACAATAACGGAAAACCCAAGCACTCCTTGCATGTTACAGTAAT
GCTTGCTGATCCTAAACAATATAAGCTTATGCAACTCTACTGTCTTTTCACACCCACAAA
TACTAGCAAGGAAAAAAATGTCAATTTATCTTATCATTGCAAAAGTAATCCTGGACAAAT
CAGAGTTTGGTAGATCAAGCAGCTTGACCTACATGACACCAATCATCAACACAGTGACAC
AGACAGAACATAGAGTAGTAATAACTAATATGCATCATACCTAAGTGCAGTCAGACACAA
AACGTTAGTTACAAAAAATGCAAACTCAGCATCACTAGTACTAGAACAACAGGAAAAACA
TGCATAACTAACAGTGGGAAGCATTTCTTCGTAAAAATAGGTAGAAATAATTACTCAGTC
ATCTGTAGTAGCAAATGGATCGTGCGAAGGTCCTGTCTCTTGGCCAATGGTTCTTGAAAC
CAAGTGCTGCAAATCAGCCATGATTTTCCATGATGTTTACAACTGAAAGCAGATATAATT
TGTACCGCTCCCGCCATTTCCAAAATGAAGTGCTGCAGTGATTAGTGTAATGGTGATTGT
ACATACTTGGAAATGGTATACATAACCGACCGAACTATGCTGTGTGCACAAAGCATCAAT
CGACAACAGCCATGACATGGCTGACTTAGAGGCCAAGAAAATATTTTTGGTTAATTTTAC
ACTTATATAGGGTGAATGCAAGTACGGCCCATAAGTGAGCTCTTAAGCTGGACCTGTTTG
TAAATAAGTTCTTAAGCAACCTTTGAATGTTATGTACAAGAACAGTGTACTTCATCCGGT
TTGCAGTACGCTAAATCAAGATTGACAACTTAAAGCTAGATGAACATTGCTACTTCCTCC
GTCCCAAAATAAGTGTCTCAAGCTTAGTACAAATTTATATTAGAGCTAGTACAAAGTTGA
GAGACTTATTTTGGGACGGAGGGAGTATTATAAATCAATTATCTAGTGAAGTCAAAGGGA
TAGTTTATAATGTATAGTTCATAATGACATCTAACATCCCAAATATAGCCATATTCCTGC
AGCACATTGGCAAATGGTCTCACGCATCACCCTCATATATTCATTTTATCTTCCTCACAA
GAGAACAGATCATGGGAAGGCAGCTTTATTTTTTCAATTTTTGTTGACGGGTGATGGCCA
TAACCATTTGAATTGACAGATGGAATTATTGCTGCTCATAGGTGTATCAAAATAATTTCC
ACGTGATGAGCAAATGCATACGTCTATGATCTAAGGACGAATAAATTTCATTATACATCT
TAACAAAATTCTGCTGGGATAGCAAAGATTATTTGAAATCCGCAAGTGTGAAAGAAGACC
TGCAGTACCCAAGCACCCCTTGCATGTTATAACAATGCGCATACTAAACAATAAGCTTAT
GCAACTGTACTTTCTTTCCCATTCACAAATATCAAAAGGAAAAAATGGCCACTCTATTTT
AGCATTGCACAAAAATCCTATAATCATAGTGTGGTAAATCAAGCAGCTTGACAAACATGA
CAACAATCATTAACACATAATCACATATAGAATAAAGAGTAATAACTGATAAGCATAAGG
TAAGTACAGTCGACACAAAACAGAAGTTACAAAAATGCAAAGCCGACATCACTAGTACTA
CATGAACAACGGGAAAAACATGCATAACTAATAGTGGCAACCATTTCTTGTAAAATAGCT
AGAAATAATTACTCAGTCATCTGTAGTAGCAAATGGATCATGCGAAGGTCCTGTCTCTTG
GCCAATGGTTCTTGAAACCAAGCGCTGCAAATCAGCCATAACCTTGTGCTCTCTCTTTGA
CTTCTCCTCGTAGTTAAACATGGCCAGTGCTCTCTTATCCTCTGCACTATAAACTTGGTT
TTCCTTCCTTATACGGATAGCATTCATCCTCTGGTGCCTACTTCCACTCATCACATACCC
CAAATCTTCAAACTTCTGAATCTCATCCGCAGAAAGACCAACCTCACCACGCCGTGGGAT
ACGCTTCCCCTGCTGTACATATTGTGCAATGGCATCACCTTCACCGGGCCTCAGTGCACC
ACCATAGCTAATATGACCATCTGCACGCGGGAGTGGCATCGGTCCAACAGGCATCTCATT
CTCCAGTGCAGCCTTCTTCTGAGCCTCAAGCATTTCCTTGAACTTAATTGCCTCTGGGTC
AATCTCTGGCTCATCTGTCTCTTCAATTTCCTTTTCATCAATGATGGCATCAGAAGGGAT
CGAATCTTCAGAATCAGACTGACTGCTACTCTTCTTCCTTGAGCTCTTGCCCGTTTTCTT
GCTGTCCGTTGAGATAGGGCTAGAGCCTACAACCTCCACCTCCTCAGAGCTAGCATCAGA
TGGAACATCCAAACTCTTACTCTTCTTCCTCTTAGAGCTCCGTCCCCTCCTCTTAGACTT
CTTGTGCCTCCAAGATCTCTTACTCCTCTTCTTATCCCTAGAATCTTCAGAGTCATAGGA
ACCCTCTGAATCCTCATCCTTGCTGTCACTCTCACTCTCCATATCAGACTTCCTGTGGCG
ACGATGGGCACGCCGGCTACGCTTGCTGCTAGAACGTCTGCCCTTACGCCCTTTCTTTTT
CTTCCTAGAATAATCTGATTCACTGGAATCAGATAAGCTACCAGACGCATCGGACTCAGA
TTCCGACGAATCCTTATTCTTCTCCTCATCGCTCTTGTCAGACGAGTCCTTCTTGGGCGA
TTCCTTCTTCTCCTCCTCCTCCTCGCTGTACTGGTACTCGTCGGCCTCGTCGTCACGGCG
AGGAGGGCTGGGAGTGACTTTCCAGATGCACTTCTTCAGGCTTTTGCGGAGCTTCTGGCG
CTTGACGCGGCGGTACTCGAAGTAGGTGAGGCCCTTGAGATCCTCGTCGTCGTCGTCGGA
GGCGGACCATTCGCCTCCCCCACCGCCGCCGCGGCGCGCCGG