Map Locations of contig_41781 (10879 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41781

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57481 1 318 bp AK353875 Not available Available None
MLOC_57482 3 3909 bp MLOC_57482.2 Available Available LOC_Os01g72780.1, FRAME:-1, EVALUE:0.0, 13101.m07932 protein expressed protein





CDS Structure of MLOC_57481






CDS Structure of MLOC_57482






Contig Sequence (10879 bp)

>contig_41781 10879 assembly3_WGSMorex_rbca.fasta
CCCTCGCCGATCTGCTCGAGCTTCTCGAAGCAGTCGACGCCGCGGGAGCCCCACGAGGGG
AACTCGTCGAGGTTCAGCTGCCCCGGGGCCGCCACCGCCATGTCCGCCCGCCGGAACCGG
AGCCTCCGCCGCTGGTAGGGTCGCTCGCCCGAGTCTGGCTGGCTCCGAGCCGAGGGAGGG
AGAGAGGAGAAGGGCCGGCCGCGAGGTGGGTGGGTACATGGGCCGCGAGCCCGCGCGGGC
GGGCAATTGAAGCGAGCCCCTCTGCGGTCAAAGTCGGGATCGGATAGAGCGTTATCCGTG
TCCGATCCGATGTTTCTTTCCGGTCTGGGGCTTTCTTTCTTGATTAAGCAAAAACACGCG
CGCGCAAATGGAAAAGGCCGCCCGTTCACCCTTGGAGGCCAAATTCAGTGTGTTCAACTT
TTTCTAAAAGTTGGGCAGGATTTTAAAAATGGGCCAGATCCTGAAATTTTGTCAGACCAG
GATCATATCTTGCTCAACTTTCACATAAGAGGCATGCTATGGGTCACCCGACGGATTTTT
TTTTAAATATCCGTCAGCTCGCGAGCCGCCACATCTGATGCATCGAGCGACAGAATAGCT
TCTTCATTTTCACAACTTAAGTCTTGTCGCAGTTTTTCTACAACTACAGTCTTATCGCAG
ATTTTTTTTTTTTACAACGAAAGTCCTGTTACAGGGTTTGTTTTTTTTTTGCAACCGAGG
TCCGTTGCAGATATTCTTTTTTGCAACTGAGATTATGTTGCAGAAGCGTCGCATCGCCGT
ACTGTCGTATTCTAAGGATTCAGATCGCAGAGAAGAGGGTGGATGCAAGACTGTCGTATT
CTAAGGATTCAGATCGCAGAGAAGAGGGTGGATGCAAGACTGTCGTATTCTAAGGATTCA
GATCGCAGAGAAGAGGGTGGATGCAAGCGTACGATTCGCCTGATGATTTATATAATGTTT
CCCTTCACAAAAAGAGTCAAAACGGTGAATTTAGTCTTCTTTGATGACACAGCCACGCCT
GATGATTTATAACGTTTTCCCTCACAAAGAAGAGTCAAAACGGCGAATTTAGTCTTCTTT
GATGACACAGCCAGCCACATCGTCCTTGTCTCCTGCATATCCCCACCATAGCCGGCACTG
TGGCCGGTGACCGTGTCTCCGGCTTGGCTTGGTCGGTCGCCACATGCGAAAAACCGACAG
ACACACCTCGCATTTCCAGGCTACCCAGGAGCAGATGTGGATTTCTTTCAAAGTCCAGCC
AACGATTTTACCACTGAACAAAACAACCAGTCCCGAAGTATCGCAGCCATTCTTCCTAGT
ATGAGCAGCTGGAGCATTCCTTTCCAAATGAATAAGGAAAAAAAACACGAGGAAGCAAAG
CAATAATACCGTGAACAGTGTCCGGCGCTCAAATCCTACAGCTCGTGTTTTCACTAGGCA
AAATTTCACGGCCCAAAGCGGCCTTCGATACACTGCTCCGTCAAGCATTCCCCCCATGTC
GATCCACTCTGTATGGCTGAATTGCACAGGTCTTCCAAAAAACGGAGCTCAGAAAACTCA
TCCCCCATGGAGCTTCGCTAAATTGCACCGGAATTACACGGCCCCGTCGGGTGTCTGCGA
AGCTCTTTTAGCACGGTAGGCAAAAAAATCCACAGCCTTCAGGAGGATGGCCGGGCGGTG
CGACAGACTTTCGGCTGATCTCTCACGATGCCGCCGCGGTTCTGGGCTTCTTGAACCTAG
GGGAGTGGCTGGACGGCCCCATCCCACCACCGCGGCCTCGCGTCCTGTTGAACCCGCCAC
TCCCGGGTCTAATGCCGCGGCCTCGTGGTCTTCCGCCTCTGCTGCTCTGTCCGTCTCCTG
ATTGCGGCGCTTCGGATCTGGATCTGAAACTGCTTCTGTCGCCTGACCCTCGGCCGTGCT
GCTGGCCTCTACCTCTACCTCTGAAACCACCCTGGGAGTGAGGCTTCCTTGCCCCTTTGA
CGAAGAATTCCTTCTTTCCAGCCGGCGCTTCCTCTTGTCCGGATTCGGTGTTAGGATCAG
CCCATTTTCCTCTGCACGCATACCAAATGGTGTAAGCAACGAGTTGAGAAGGATGAGAAA
GGAGGGGCTGGCGCCTGGCGGTGGCTTTACCTCTTTGGGGCATGATGCTCGGGGTCTTTC
GCCTCGGACGGTGCACCATCTGCTGGATTATTATTCCCTTTGCGGCCCTGCAAAATTCAA
GTACCAATGCTTATTAAACTGATAGACTTTGAGTTCTATTTTTTTTTTCATGCGAGCAAG
CTTAGTTCAGTTTGTGAGGAGGGAATAGTTTGGAATCTTCATGGCCTCATGGTTTGCTGT
TTTTTCCATTTTGAAAAGTTTGCGGTTAAAGAGCAACGCCTTTTTATTCGAGAGGAAACC
GTAACGTTTATCAAGGGCTCGACTAACATTTTTATAAGTGTGTGGAAAAGTAACACTTCA
AACAAGAGCTCGGCATCTTTGCACTGGATAGCTAGTGTGAGTTATATGATGAACTTATGA
AGATTATGAAGGAATTAATTCTCACTAAACATTTACATTTGATAAATTAACCCAAAATTG
ATGGATATGGGTCAATCACAGGCTGAATGTAGCTTGGCAAAAACCATTACGGGCTTAGTG
CTAAAAAAGGTATACAAAACATTCAGTAGATGAAAACATATAGATCGCTATTCTAAAGCA
AAATTAAGAAGAAAAAAAACTAGCGAAGGGAATCTCACCTCTTCAACACTTCTAACAAAC
TCCTTGTACTTTTCAGGTGTAACCAAGTCAATAGCATCAAATCCACACTTTCTTATCAAT
ATTTCCACTATTAGTATAACCTGCATGTAAAATATCGAAACACATCTTGTTAAGTGTGCA
CCATGCAGAACATATGAATGGATGGAAACTAAACCATGGAACAATTGCACCGACTAACCT
TCCCTTTGAAATGGTGCTTTGTAACAGATGACATTGGTAATATGCCAGTCATGATATCTG
CTTGCAAACCCAACAGTTTTTCTGATTGCAAAGATGTTACCAACACCTTAACAAACCCCA
GAGATGCCTAATTTTTTTATTATAAAAAAAATATCAGACTCTTCGATGACAGGAAAACTG
AAAACAACCAACAGGGCATACAGAAGACATAGAACCCACCTTAGTTACTTCAATAGCTTT
ATTTTGCAGCAGAACTAGGACTGATGGTATCAAGTTTGGAACTTCCACGCAAAAATCAGC
ATCAGTATATATAAGCAATGATAGTGCCGCTATTGCTCCGCTCACTAAGTGAGGAGACGG
ACTAGAAAAATATCCCATCACCTGAAATTTAACGAAGTTGATGTTTTTCAATGTTTCAAC
AATGGAAATCCTGCATATGAGACAGACTAATGCACTTGCCATCTGTAACTATATTTCTTA
CTTACGACTTTACATAAGAGTAGTCATCATAAAATAAATACTGAATCTAACAATATATAT
AGGTATGATAGATCTCTACTTAGGTGTGCAGGTTAGCCATTTACAAAACATCACCGCAGT
GGTCCAACATCATCGCGATGTTCTCCGAGCTCTTAGATCGCTCTTATCAAATAGAGACTA
TATATCTTATAACTGTATGCTTTCAAGTATGGATGCTGAAAAACTACAACTTAGTTTGAC
ATTTTCCATGAGACTTGTTCTTGCATAGACTTCATGCACCAAGCATCAATAATTTATAAC
TTATGAAAGAACTTAATGGCCGAAGCTGTTCATAATACTATCATTTAATGCTACAAATGG
ATAGAACATGTTGATTGCTTTCTTTCATGAAAGGCGAAACAAACATTTGACCTACAGTGG
TTAGGAACAGGAAAGAAGAAATAATTGTCTCCTCAAACCATAGGAAAATATCTCAAGAGC
AGAGAAGAAGTTCGTTAGCTAACCATTGTGAATAGCCGTTGAAGATCTGAATCTCCGTTA
TTCGAGTCAGAACTCCTCAAGCTAGTACTAATAGCCAGGAGTACATCGTATGCTAGTCTT
CTACTTTCCTTCTTAGACTGCATTTAAAAGAAAACAGTGGGAATGAACCAAAGCAGTCGA
TGGCAAGATGAAGAAAGAATCTTATCACGTGAGCTTTTTCATGGCCTTGCTTTAAGCCAG
TATAAATTTATCCTTGTATAAATGGTGATGTCATATGTATGACATGATGTTAGCAACCTA
ATATACAACTGATAATTGATCAAAATATGAGGGTATGGTAACAGACCTTCAATGCAAGTA
TTAACTCATTTAGAATCAAGAATGCCTTCTTGCTTGTGCTCTCTTCATTAACCTTCAGAA
TGGTAGAAGTTAAGTAAAAAACCATGGCACATGATTCAGCAAGCAGGATCGATGAAACAT
AGAACTAGACTAAAGTAACACAAGAAAACATGCATGCAGTATTGCAGTCAAAGAACATCA
TGCCGATTTTGATGCTCTCTTGGTAGCAGGTGCATCCAGTGTGCGTCCACTAAGGAAGGT
GAAGGGTACGGATGAGTTAGCCTGCTAGCTACTTGGGTATGGCTAGTATTCCAGAAGATA
CAACTAGTAGTAGTGGCAGCAGGATAGGTGCAAGTGGCGAAGATGGACAAGGAAGCATTG
TAGATTACAAAAGAGTCTCAGAGCCTCTCTTCTATGTCAGGGATGCGCCCTGCCGCTATA
TTTGCCCTATTCTCGGTGTTCCGACCTTTTATCCTAGCCAATTTATACCGCTGTGGACCA
AGGTCCATAATATCCACTTTGCAGAACTAAGACGTCGGGTTATTCTAATATGTGCAATGG
AAGATTAATAGATGAAGGGTGCACCTCTAATTAACAAGCATTTGTGCTCTTTATGGTACT
CACTGCTCAAAGACCTGTAGTTGCATTTTTTTACAAGTGCAACAGCCATACCTTAATCAT
GTGAACCAACAGATACTTGTAGCATACTAATTGGCCTTCTAAAACTGCATTGTTAGAATC
TGGCTTTATTCCATGAAGAAGCATCATTATTTCATCCAACTGAGCTAACGAATATTCATA
GTGTTCCTGAAAGTAAAGAAAGGGGTTAAAAGGCAAAAAAAAAATACATGTCAAATTTGG
AAGTTGCATATGAGGAACTCATGCTGACCTTCAAAATTGTGCTTAATGCAAAGAGAGCTT
TGCTCTCACATGACTTGCTGCTATCCTGAGGAGAAACGATAAGTAGTGTGAGCAATGAAC
TCCCTACTAACAGTTGGACATTGGGGCATAATAAGAGCAGAGAATAGCAAGGATACCAGT
AAAGAAGATTTGATGAATCCAAAAAACAAATCAAGCACATCCTCATCGGCAGCTTCAGCT
AGTGTTGAAATGAGTTCCATCAGAAGTGACCTGCACAAGCAAAATCATAATCATATCATG
CATAACAAGCTTCCGGATGGGATGCATTTATGTGTTGGCTACCACATAGTTACCACATGT
GAATACATGATGATGCATATAATCATATAACAAACTTCCTATATGTGTGGTAAAACTCCG
AGAAAAATCCTAGTTTCGATGTCATGATTGTTCCATGATTCATTTTCATTTTCTGAGAAC
AGCGTCATGATATTATTTAACTGGATGGGAAGATCACCCTAGAAGGTTACAGATTAACAA
CATTGATTTCCTTATAAAATGATGGCTTGTAGGTACCTATTTACATGGTAGAAAGTTCTG
ACACTGCTGAGACCTGATATTTTGGTTTTCACTTTGTGTTTTTCTACAGAATGTTTAACC
TAGACTAAAAAAAGATCAGACCCGATAGATGGGTAAGGATAAATAGAAAACCTCTTATTA
TTTATCTCCGCTGTTGAATCAGTATTCTCTTCGCCTTTTCCATCTACCTCATTTGCTTCA
CATTCTAGATTCTCTGGTGTTGATGGAGTATCTTCCAAACCACATTTTTTAAGTAGTGAA
AGAAAAAGGTTACAGATGTTCGCGCTACCAGAAAGTTGAGCCAGGGGTCTCAGCGCATCC
TGTAAAACGATAAAGATAACCCGATAAATATCACAGAATGTGTGGTCTGAAAGGGAGTGT
TGGTAACCATAGAAAGTATCACAGGAATTGTTCAACAACGCTGAAGAAAAGTAGTGGCCC
ATAAATGCTTGTTTTCAAACAAAGGTATACGCTTACAGGTAGCTAGAAATCATGCCAAAA
ATGCATAGTGCAGCAAAAAACTTTCAGGATCGGAGAGCTGGAGGCATACTGTTGCCATAC
ACATAGAGATTTGAGGCTCTTAACATGTGTGAGAACCACCTTACACAAGTCTGCACTTAG
AGCATCTCCAGCCGTGCCCCAGAACGCCCTCCCAAGCGCCTTTTTAATCGCCGGCGTTAA
AAAAATCACCCAGTCGCGTCCCCAGGACGTCGTTTTGCGCCGGATTTGGCCAAAACTAGC
CCCGGCGGTCCCAGGCCAAACCCAGCCCCCCGGGAGGCGCTTGTGGGCGACCGGCGCTAT
TTTTGCATGCACAAACCCCACCGGTCAGCCTCTCTCCTCTCTTTTTCTGCTAGGCCCACC
ATGTGCATGTAAAAAGGGATTTTTTCCTCTATCTCTCTATCTCTCTCCTCATGTGGCCGG
CTGGGTGGGGGCGCGGCTGGGAACCCGAGCCCTCCCAAGTCGTTTTTTTCGCCGGTTGGC
CCCCAGGCGGAGCTATTTCGGCCCCTGGGGGCACCTAACGGCTGGAGATGCTCTTAGTCT
TTCAACAACAAGCTTTAAATCATGTGCACGGCATACACAGGAAAAAATAATAGAACAATC
ATTAAGTACAAGAAAACTATTCCTTTATGCAGAAACGAAACTCCATGCATGAGTTTTAAA
TTGCATGTTGTAAAGCAATTCACACTTCATAGTCATGCGACTGTTTAGTTAATACATAGT
CACACGGCCACGTAATTAAGGATCCGTAAGGATAGGCAAACAGGATTCCAAAAGGTCCCT
CTTTTCTTCCCCATTCACAATGCACTTAGTCTTGCATCTGCGTGAAACTTAAAGCTCAGC
CTATGGTTTCAAATTTCAAACTGAACGAGCATACATGCCTCTAATGGCCTCTCTTTTCAG
TGACAAAATGTTTCCTAAATCTAACATCTTTAACAGGCATCCATGATCCACGCATCTAAC
ATGCAGAGATTAATAGAATCATAAATGTTTGTCCACAAGCATGAGATGCTGTTTCAAAAT
GTGTGTATGCAACAGAGTCAAGTATTTTGGAGAAATAAAAAATTATAAAGAGAATCGTCT
GGTAAAATAAACAACTGAGTAAGTGGTGCACCTTCAAATAAAGACGCTTTTCTGATGATT
CAAGGAAATCATCTGCAAAAGTGCAAAGAAGATCCACAGAATGTGATGCCAAGACCTTCA
TGCTTTTACGAGCATCTTTTTTAGAGCACTGTTGTAAGCTTAGACAGCTTAAGTTACTAG
TCTTCGAGGAGAACAAGGCTGAAACTTCTGCAGGGACTTCTACATCTTCATCACTGCTGC
TTAATCTTCTAGTTCCATCTATAAGTTGCTGGCGAACAATAGATAAATTGTTTGAGAGAA
GAAATGAAGCAGTTTTGTAATATATACGAGTCTATAAGATTAAATATAAGAAAATCGCAG
TGTATAAAACTAAACCTGCAGGCCTTTACTAGCGGATTTGTAGAGACACCGATCAGACTT
TAGCATCTCTAGCAGCAGTTTGGACAAGGAACCAAAATTCTGATATACATCAGACGGATA
GCGGCAGAAGGCAGGAAGCAAATTCCACAATTGATCACTCCAACCTTGCAATTCCTTACA
TTTCCGTGCTTTTTTGGCTGAAAGAATAAAGGAAAATTTCATGAAGTCGTATAACATACT
AACATGTGAATTTAGCGCCTATTGAATTGATTGTCTTTACCCCTGCTTGAAGCCTCTCGT
AAAGATTTTGCTAGCGGTACAATGTACTCTAAAAAGTGTTGCAGTGAGGCCCCATAAACA
TACTTGTTTAAAATGGGTACAATCCACATATTTGAGCATGTAAACCAAGCCTCCTCAAAA
GATATTGGAAGTAGAGAATGAATTTTAGCTGGCCCCATAGCAACTATTGCTGCCCCAATG
CACTCCTCAACCTGCGAATGTGACAACAGAAAAGCTAAGTTAAATGGAAGGTTAAAAATG
TGAAGTGCAAATATGTGTGGAGTAAATATTGACTGTATACTAAAACATTCTATACTGTTA
TTTACATTTTGCACTATATGGAACTCAAGGAGAACATATCCAGTGATACCGCTCTTTAGG
GATATTGTGATACCAACGACGAATTGGCGCCATAAATGGTGATAAAAAATCAGGAATAAA
TTTATAACATCAACACAGTATTATCCTATCATGTGCAATTTACATGTTTAGGGAAAAAAG
ACAAAATCTGCAGAAAAGCAAGGAAAAGGAAAAGACATACGATAATATTTTAGGGTCACA
AGAGGTGATGTACATACAAAACTAGGATGTTCCCTTTTTTGGACGTGATAATAATCTAGA
AATGAACTTACATTCTTCAGGTGTGGTTCTTTGTGTATTTTCGAACCAAGCCGTGACAAA
GTTAGTAGGATATCTTTCATAAAGACATAAGAACTCTCCCCTGCAGACAAATTAACAAAT
ACCAAAGAGTTGGTGAATCAAAAGTGGTGATGTGTAAAGCAGGGTAATATCAACATAACA
GTTATGTTATGACAAAATGGAAGAACAGTTATGCGGAAAGGGTACTAAATGCATGACAAA
ATATGGCAGGATAAAAGGTGCTCGGAGAGTTTTGTCAACCTTGCATATGTCTTAACAGTT
TGCTAGGTAGTTGCAGCCTAGCAGGAGTAAATACTAAGTACTTTAGCATCATGTTTGATG
TACCTTTTGTAGCACCACGTGTACTTATTTGTACTCAAAATGACAAAAAATTCCAATACA
TGTGCAAGAGATAATATAAAGGCATGTGCTGTTCTATGTAGAGGTAAACCACGTTAAACA
AAACAAACCTTATAGAGTCAGGTTAACTACTACTTGGAATTCAAAAGATTCTCTCAAATG
ATTACTTATGTGATCCAATTATTAAGGCAGGAGATTTTCTTGTTGAAATAACTGAAGACG
TACCGAGTTTGAGAAACAGAGCCAAGACAATTGTTAAGACATTACGAGGAGGAGAAGCAC
ACTTTCTAAGTTTTTTATTGATAGACGAACAGATTGATTTGATGGCAGCCCCATCGATCG
AATCCTCAGCATCACACCCTGATTCATTGGTCACAAAAATACTTTGGTCGACATGACAAT
AGATGCACTCTATTAACAGTTCCGCTACATCTTCAGAACATTTACTGTCCAGAATTAGGT
ATCCTGCCAAGTTGAGAAGCATTACAAATAAGTTAAGTTGGTAAGTGTTACAATACATAT
GTGACATAAGATAAACCCAGATATATCTATCACCAATCGGAAGTGTTGAAAAGGTCAAAG
ATGCTAATCAACATGATTTACAAATATCCCCATAAATATGTTCTCACAGGTCATACACCT
TACATAGGGACTGCGTGCAAACTTTGAACAGATGCGCTCTCAAAGGCAACCCAAAAAACA
AGATGGCAAGTGCTAACTTTCATAACCGAGCAAAGAGATAAGTTTGCCCCCTAATGCACC
CATGAAATATAACACTGGACAAAGCATGGTTGAGGACTACTTGTTCAACATGAAAAAATT
ATGATAACCAGAAGAACACATTATTCCTAAACGACAAACGCCTAGGTATGTCAACTGTAG
AGTCATGATTCTTTTAACTGGCCATATGGATATCTATAAGAAGCTCATTGCATCAAATCC
TGGCGCATGAAAAGCAAGAAGATGCAAACCTGAAACTGCCTCGAATGCAGACGGAAGAAA
CTTTGTCCACAATTTTGGGCGACCAGCCAGTTTCCCTAAACAATTTCTCATCAGCTGTAA
TGCTGCGATGATGGTATCATCAGGCTTCTTCTCATCATAAGGCAGGTAAGCCAACACTAA
GGAGATGAGCTTCTCCAACTCAGACTCAATATTCTCAGCCTTAAGATGCTCCAACAAGGT
CTCCATAAGCCTGAGGACATGCCTTGTGAGTGGGCTAAAACGGGGTCTCAATAGCCGATA
AGCACCCGAGAAAACCGTACTCCTTGCCTTCTTGGATAGATATGGGACTAAAACTGTGAC
CGCGCCTAGCATATGAACCGCTTCCATCTCCTTAGCCTCGGAAGCGTCTGAATCCAACTT
GGCAGGACTTCTCACCGATGAAATGTGCTTCTCAAACAAGTCAGTTGCAGCACTGCTAGC
TTTCTTCGCACAACCGGAACGTTCCAAGTAAGAAAATAGCTTCTCCACGCTCTCCTGTGC
ACATCTTCGGACCTAGCAAAGTGAGAAATGGCGTGCACATGAGTGTGATTTCTATATCAG
CAACAGGAACTCCAATCCTGGCTTCCTCACCTTGGCCCGCTGATCCACAGAGGCAGCGAG
GAGAGCCTCCAGAGGCGCGGCGACAGCGCCCCAATCGGCTGCAGCGTCGAGATGGAGGGC
CAGCTGGCCGAGCGACTTGACCACCGAGCGCACGGTGCCGGTGGGGAGCTTGGAGGCGTC
AGGGGAGGCGAGGAAGGCGGCGAGCGAGGAGGCGGGCTCCGAGGCAGAGGCCGGCGGCAG
GGAGGAGATGTGGGGGATGAGGATGACGAGGAGGGACGCGAGGGCGGCGGCGGCGGCGGG
GTCGGAGGGGCCGGCGGCTCCGAGCGCGGGGACGACGGCGGGGCGGGAGCAACCGGCGGG
GAGGGGCACCGGCACGGAGGGTTGGGTGGTGCTGAGGGCGGGGGCGGGGGCACGCGGGTG
TGAGTGTGGGGCGGGTTCG