Map Locations of contig_41777 (9718 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_41777

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57478 1 181 bp None Available Available None
MLOC_57480 1 502 bp MLOC_57480.1 Available Available None
MLOC_57479 1 383 bp MLOC_57479.1 Available Available None





CDS Structure of MLOC_57478






CDS Structure of MLOC_57480






CDS Structure of MLOC_57479






Contig Sequence (9718 bp)

>contig_41777 9718 assembly3_WGSMorex_rbca.fasta
AAGCTCATCGACTCCGAGGCCAGCCACCCGCAGATGGCCGGCTCCAAGGGCTCCTCCTGC
GCCGTCAACGGCTGCGACGCCAAGGTCATGAGCGACGAGCGCGGCCAGGACATCCTGCCC
TGCGAGTGCGACTTCAAGATCTGCGCCGAGTGCTTCGGCGACGCCGTCAAGAACGCCGGC
GCCCTCTGCCCCGGCTGCAAGGAGCCCTACAAGGCCACCGAGATGGACGACCTGGTCGGC
GCCGCCGACGGCGGTGCCAGGCCCACGCTCTCCCTGCCCCCGCCGCCCGGCGGCGCTCCC
GCGTCCAGGATGGAGAGGCGGCTGTCCATTGTGCGGTCGCAGAAGGCCATGACAAGGAGC
CAGACCGGCGACTGGGATCACAACCGCTGGCTGTTTGAGACCAAAGGGACCTATGGGTAT
GGGAATGCCATCTGGCCAAAGGAGAACGATGCCGACAATGGCGGAGGAGGCGGCGGCGGC
GGTGGAGCCGGGCTCGGTGGACACGACGGGCAGCCGGCGGAGTTCACCAGCAAGCCATGG
AGGCCGCTCACTCGGAAGCTCAAGATCCCTGCTGGCATCCTCAGCCCATACAGGTATTGC
TCAACTTCACTGCACTTGCATATCATCTGTTCATGTTCTGATTCATGTGGATGTTGGGCC
TGGTTGTCCCTGGTCACATGGGAAATGAACTGTTCCATGATACACCTGACTTGATTTTAA
TCTTAAAAGTGCTTCTAAAGTCAAACTTTGGTTCAACCTGGATCTATAGATTAGCTCCAA
TTGCTATGATTCAGTCCGTATATGTATTCAATAAACTAGTAGTAGGTTAGGTGAGATGTT
AGATCTGTGCTGCATCTTCTGATCTTGGTGTCCTTAGTTCAAAACAAACATTATGTTATC
ATATTGATAGCACCAAAATAATTCCTCACCACACTTGACACTTCTCTATTATATATGTAC
AGTTGTACATACACTTGATATTTGCTATTCATATTCATACTGTCTAGATAGCATCTAGAA
GCTTTTAGCGAAAGAGATACTTCTTGATGAAAATGTGAGATGATGTCTCATTCTCCTTTG
AATTTCTCTATAATGATGCTGTCCTGTTCATTAACTTGATTTCCCTGATGCTTCATTCAG
GCTTCTTGTTCTCATCCGATTGGCTGTTCTTGGCCTGTTCCTCACATGGAGAATTAAGCA
TAAGAATGAAGACGCGATGTGGCTATGGGGCATGTCTGTTGTTTGTGAACTCTGGTTTGG
CTTTTCTTGGATCTTGGACCAGCTGCCGAAGCTGTGCCCTGTGAACCGAGCAACTGACCT
TGCTGTCCTGAAAGACAAGTTTGAGAGCCCAACACCGTCGAATCCTAATGGAAGATCTGA
TCTGCCGGGGCTTGATATATATGTGTCCACTGCTGATCCAGAGAAAGAACCTCCATTAAC
TACAGCAAACACCATCCTGTCCATCCTTGCTGCTGATTATCCCGTCGAGAAGCTTTCTTG
CTATGTTTCTGATGACGGAGGCGCTCTCCTTACATTTGAAGCAATGGCTGAAGCTGCTAG
CTTTGCTAACATGTGGGTTCCCTTTTGTCGCAAGCACGGCATCGAGCCTCGCAATCCTGA
GAGTTACTTCAGTCTGAAGAGGGACCCCTACAAGAACAAGGTACGCTCAGACTTTGTCAA
GGACAGGAGGAGGATCAAGAGGGAGTATGACGAGTTCAAGGTCAGAATTAATGGTTTGCC
TGACTCGATCCGTCGCCGCTCTGATGCTTACCATGCCAGAGAAGAAATCAAGGCCATGAA
GAGGCAGCGTGAAGCTGCTCTTGATGATGTTGTGGAGACTGTTAAAATTGCTAAAGCTAC
CTGGATGGCTGATGGCACACATTGGCCCGGTACCTGGATTCAACCCTCTGCAGAGCATAC
TCGGGGAGACCATGCTGGAATAATTCAGGTAGACATTCCCAGCCAGCATTATTTCTTCTC
TTTGCTATAAAAGGCATTAGTTGCAATGCTGACCTCTTATCTAAAAAGAACCCATTATGC
TTGTGCGCTGAACTATCTTCGGTACAGACATGTGGTACTAGATATACTTACAAATGAACA
ATTAGGCTGCACTTAATCAATGGGACAAATTTGCACCTGTAAATTATTAATCATTCCATT
TTCCTATTGAATAAAATGTGCACATCCTTTTCAGTGTGTGCATATTGGGTATCTCTTTAC
TAAGGAGTTACACTTTCTTAAGTACAAATGAATTCTTTAACCATTTGATCACAATCTAGT
ATCCAGGTTCCAGGAAAACTATCTGAGTTGTATTATATGAACTGATGCACACATATGCTT
ACCATTTGCTGTCCTGTTCTTCAGGTGATGCTCAAACCTCCAAGTGATGATCCCCTGTAT
GGTGGTGACGGTGAAGAAGGCAGACCCCTTGACTTCACTGACATAGATATCCGTCTGCCA
ATGTTGGTCTATGTGTCCCGAGAAAAGCGCCCAGGCTATGACCACAACAAGAAGGCAGGT
GCAATGAATGCTCTAGTCCGCTCATCTGCTGTCATGTCAAATGGACCCTTCATACTCAAC
CTGGACTGTGATCATTATGTTTACAACTCTCAAGCTTTCCGTGAAGGCATGTGCTTCATG
ATGGACCGTGGTGGTGACCGTATTGCCTATGTCCAGTTCCCCCAACGGTTCGAGGGCATT
GATCCATCAGATCGCTACGCCAACCACAACACTGTCTTCTTTGATGTCAACATGCGTGCA
TTGGATGGTCTCATGGGACCAGTCTATGTCGGCACTGGCTGTCTGTTCCGCCGTGTTGCA
CTCTATGGATTTGACCCTCCACGCTCCACAGAGCACGGTGGCTGCTGCAGCTGTTGCTTC
CCGAAGAAGCGCAAGATCAAGAGCACTGTTTCCTCAGCTACATCTGAAGAGACACGGGCT
CTGCGGATGGCAGATTTTGATGATGAGGAGATGAACATGTCAACATTTCCCAAGAGGTTT
GGTAACTCAAACTTCCTCATCAACTCTATACCGATTGCCGAGTTCCAAGGGCGCCCGCTT
GCTGATCACCCTGGTGTGAAGAATGGCCGTCCTCCTGGTGCCCTCACTGTCCCTCGTGAC
CTTCTCGACGCCTCCACGGTCGCCGAGGCTATTAGTGTCATCTCATGCTGGTATGAGGAC
AAGACAGAGTGGGGTCAGCGTGTCGGATGGATTTATGGTTCAGTCACAGAGGATGTCGTC
ACAGGGTACCGGATGCACAACCGTGGGTGGAAGTCTGTCTACTGTGTCACCAAGCGTGAT
GCCTTCCGCGGCACTGCACCTATCAACCTGACTGACCGTCTCCACCAGGTGCTCCGGTGG
GCTACTGGCTCAGTGGAGATCTTCTTCTCCCGCAACAATGCGCTGCTCGCGAGCCGAAGG
ATGAAGTGTCTTCAGAGGATTGCGTACCTCAATGTGGGCATCTACCCGTTCACGTCCATC
TTCCTCATTGTCTACTGCTTCCTGCCGGCGCTGTCGCTCTTCTCCGGTCAGTTCATCGTC
AAGGAGCTGGACGTGACCTTCCTCACCTACCTGCTGGTCATCACCCTGACGCTGTGCATG
CTGGCGGTGCTGGAGATCAAGTGGTCTGGCATCAACCTGGAGGAGTGGTGGAGGAATGAG
CAGTTCTGGCTCATCGGCGGGACCAGCGCTCACCTCGCCGCTGTGCTGCAGGGCCTCCTC
AAGGTCATTGCTGGCATTGAGATCTCCTTCACGCTCACATCCAAGTCGGGCGCAGACGAC
GAAAACGACGAGTTCGCCGACCTCTACATCGTCAAGTGGACGTCCCTCATGATCCCACCC
ATTGTCATCATGATGGTCAACCTCATCGCCATAGCTGTCGGCTTCAGCCGCACCATCTAC
AGCGAGATCCCGCAGTGGAGCAAGCTCCTGGGCGGTGTCTTCTTCAGCTTCTGGGTACTG
GCTCACCTGTACCCGTTCGCCAAGGGCCTCATGGGGCGCCGCGGGCGCACGCCGACCATC
GTCTTCGTCTGGTCCGGCCTCCTCGCCATCACCATCTCCCTGCTGTGGGTCGCCATCAAC
CCGCCATCCCAGAACTCGCAGATCGGAGGCTCCTTCCAGTTCCCCTGATCGTTGAAGCTA
GCTTCATCTTATATGAGTTACATACCATTTGTTCCAGCAGCAGCAGCTAGCTGGTGGGGG
GTAAAAAGTAAATTCTGACCGTTCCCTGTGGTTAAATTAGGTGCTTTTTCGTGTTGTCGG
AAAACGGTGGTGGGTCATGGATCATACTAGTTCATTTGTTCTCTTGATTCTGTTCATTAG
ATGTTTGGACCTGGACAACATCTAGTACAAAAATTCAGAAGTCTTATTAGCAAGTCTTTT
CAAAGTCCCCACATCCGTCTTGCATTGCAGCTGGTTGAGTGGCATGTGTTGAATATTCTC
AAAGCTTGTGTTACCTGTAGCCATCGTGCTCGGTCCTGATAAAGAAGATCCTGATCTTTT
TTGGCAAAGTGTAGTTCTCGGACCAGGTAGGATTTTTTTTTTTATATAATCTTAAATTGG
TCTGACCCTTCCCTGGACGCTGCACAAACGGCAGCTACATGTACCGGGCTGCCCAAGATC
ATGTACAGAAATTCATGTCTTAGCATACTTCTTGCATTGCAGCAAATCTTGCCTTTGTGT
GTTGCATTTCGTTGTCGAGCTTGGTCTGTAAAGAACTGGTGAAAAAGGTTTGATATTTTT
GTTGGCACGTGGATTTCTCTGACCAGGTGCATGGCAGTAACACGAACAATTCAGAGCTTG
TGCTTGACCAGTTCAGTTCAGGCTTGGCTTTCGTCATAAGTTAGTGCAGGCTTTAGGAGT
AGATTATTCATGGATGATGACACTTGGAGAGAAAGAGATGGATGGAAAAAGACACTCTGA
TGACTGATGATGACAAGCAAGGAAAAAAAATGATTTGTTGCTGGCCATAAGAACAAGTCA
AAGTCTTTTCAGCAAATCCCTATTGTTGAATTAGGTGTATTTCTTGTGTTACTGAAAAAT
AATACTCCCTCCGTTCCAAAATAAATGTTGTAGATTTAGTATTAAATTAGTATAAATCTT
GTACTAGATCAACGCCACTTATTTTGGGACGAAGGGAGTAATTCACTTGATTCAAAATAA
GTGTCACAGGTTTGAATTAAGGTTGTAGATCATACAATTTCATTTGTTCTTTTGATTCTT
TTACTAAGATGAGTGGGGTACAGGCAATGGACCAGGCCGCACAAAATTCAGCAAAGGGAA
AAACTTTAGCGCCTAGAACTAACCCCAAAATACCTTAAAATTGTCTGACAAATACACAAT
GCGAAAACATATTACTAAATATGGCTTAATTGCACAGCAAATCTAAAACCTAAACTCAAA
GCGCCCGTATGTATGTCTCAGGTCAACGTTTGCGTGTGGTTGACTCCCCTCTCCTCTCTC
GCTCCTCCCGTCGCCGCCGGAGGAGGCTGACGGGCAAAGCCCGCTTGGCGGACGATAGCG
GCAGAGGGCCCTCGTCACGCGCCGCGTGGCATCGGTCCCGGTCGAAGGCCCGCATCTCAC
GGAGGCCGTGCCCCGTCGGCGTGCGCAAGCCGGGGCGGCGGCCCCGGGCATGGTGGCGAC
GCTGCTCACCCGCTCCCTCAGCTGGCTGGCGAGTGGGGCATGGCAAAGGTCGACGGCCGT
TGATCTAGCGCCTGGCGCCCAGATCTGGCGTGGTGCGCGGGTGCCGGGGTCCCCTTCCTC
GGCCGGGGAAGCTGTGCTGGTGGCGGCGAGACACAACTTCGGATAACGGCGCGACAACAT
CGTGACGGTGGGGTTGGCTGGCCCGGTTGCGACAGCTCCGGCTAGCTCCTGCAGTTCCAC
GACAGAGGTGGTGTGCCGCGGTTCATGGACAATGACGTGGCGGCGTCGCAATGGTGCGCT
CGGCGTACTGCCGTTAGGAGCGCTTTTGTCCTGGGCCTCGCGGGAGGCGGGGTGGTGGCA
TGTGGAGGCCGGGGCGGTGGTCCCAGGTGCGCGGTTGCGGGAGATGTTGGTGACTGATTG
GAATGGCGTGTGGTTCTGGCCGTCCCGTCACACCGTTTGTGGTGCGAGGTGGGCTGTAGT
GATGGGTGTAGCAGGTAGCTGCCTTGCATGTTTAAGCTGGCGGCTTGGGGAGGACGATCG
GCATGTGGCCGGAGACAGTTTGCTGGGCATGCTGTTTGTGGCGACGGTTTCGGTGAGCTC
CAAGCGAAAGCCTTGCAAGACCTCAGTCGTTGTCGGCATCGACGACATCCTAGGACGTCG
TTCCCACCTTGGAGGTGTCGTCGTGGGAGCCCCTTCACCATCTTTGTCACCTCGGTCTCG
GGCTCTCTGGGTGAAAACCCTAGTTTCGACCCTGGTCGGAGCAGGCGTCGGCGGCGTTAC
CGTCGCTTTCCTGTTGGGGAGAACGCCTTGGAAGTCTCGTCCTTCGTCAGTTCGCGATGG
CTCGGGTGGCTTTGCGGGTTCATCGCCGGCCAGGAGTGTGCGCGGCCTCGGGGCCGGTGA
GGAAGTCGGAGCGGCGGCTCCAGAGAACAGTGATGTGGAGTGTTGATTCTCGCCATCTGG
GCGGCAGCATCGTCAGACCTCGGGGTCGGCGGACAAGTTGGAGCGGCGGCTCCGGAGAAC
AGTGATGTGGAGTGTTGATTCTTGCCGTGTGGGCGGCGCGGTCGTCAGCTTAGCTGGAGC
GCAGCCTCGGGGTCGGCGGGCAAGTCGGAGTGGCGGCTCCGGAGAACAGAGTGTCGAATC
TGGTCACGTGGGTGGCAGGGTCATTGGCCCGTGTGTTTATGTATCGTTTTCAGCCAGTTT
TTCTTATTAACTAGTCAACTCTATTCTTCTAAATAGAAAGACAGAGCTTCTACTGGTTTA
AAAAAATCAACGCAGTGAAAGAAATATCATAATATTCCACTCCGCATTTGACAACTTCGG
CCATAGTTGAAACAAAATGTGAAAACTAGGCCTGCCTGCACATTCACGCACGCATACTAT
AATCGAAAACAAAGTCTGCGCATCTTCCACTTAATTTCAGGCATCTCCAACATAAACCCG
TAAATATTCACCGCATCCGTTTGCAGACAAGGGTGATCAGTCCGCTACACAGATGCGGGA
GGACGATATTAGCCGCAGTCGCATATATTTTGACAACAACTCAAACCAACCGGATAAAAT
TCATGTAAACACAACCGAATTTCATGCAAACACGACTAATTTTATATAAAACGAAGGATT
TCATTACATTTACATCCTAGTGAGGTTCCAGAGGTATAATCAATACCTAATCTAAATTGT
CGCCGACGCCCTTTCCTCGTGTCCAGCCATGAACCCCGATAACTGAAACTTCGCTTTCTC
CAGCTCCGCCTCGGCGCTCTCTAGCTCCACCTTCATAACCTGCTCCTCCGGAGACCCAGC
AAGCGTAGATGTCCACCTTCGCCGCCAACTGATTAATCGGCCGATGTTGTTCAGCCCACC
AAGCTTGGCCTCAACAGGAGGGTAGAAGCAGTGGCTTTCCTGGGAACAAAGCAGCGACGA
CCTCTCGTGCACTACTCTTCGTCGCTGCTGGCAGCGCCGGCGGACGTGTCGACTTTGTTG
GGCACGACCTCGGTGTTGTCCTCCTCGTCATCGTCGGTCTCGCCAAGCAACGCCTCGCTC
TCCTCCTCGCCGTCCTCCTCCATCACCCGCTGCCGTTAATGCCATCGATCGAGGCGAATC
AGAATCCAGGAGGGCCCCAGGCTCCGCCAAGTCGGCGTCTGGTGTGACCGCCCTGCTGGC
ACCGAGCTGCTCCTTCGCCTGCAGGTGTTCTTGGTGGAGGTGGTGGTTGTAGGCGGCAAC
GGCTTGTGCTTCCCGGAACTGCTCCTCCCACACCATGTCCATGTAATGGACACAGGCTGG
GTGATGGTCATGGTGCAGTGCACCTACGGGGGAGGCATTACAGAGGAGGAGGGTGGTGCG
ACGATGGAGGAAGAGGAGGGTAGTGCCGGGTCTTCATCGACCGCGTCCTCCATTGGGGCG
TCGAAGTCGTTCGGTTGCCTGCCGGCCCGCCACTCGGCAACAATGTCAGTCATATCCTTC
TTCTGCTCTGGCATCAACCCGTCCCATAGAGATTTGGCACGGGAGGAATCCATGGTTGGA
GAGGGATCGGAGGCTGATGATTGTGTCTATGACCGGTTTAACATTTTATATAGCACACGG
ACGAATGAATAGCGCGAGTGGAGACGCCGTGACAACCGCATGCCATCAATGTGGGCGGTA
GACGGATGGATGGGTAGCCGTCGTGTCGATTGAACACGCAGCAGTCGCCTGCACCGGTAA
ACGGTTCTGGAGGTATTCTCTCGGTCGGTGGGCAGCTTCAATACCGGTGCCAGTGAGCGC
TCGTGTTTGCTCTGGTCGGGCATGAATGCAGGCATAGGCGCTCTCGAGTGGTGCTGACTA
TTTTGCACGGAAGAGGGGAAAGGTTTTGGATGCGCCAGAGTGGTCAGAATCGGGCGAAGT
AGCGGTGCAAACTCCTGCAAAGCTTCACCATGTTTTCTCCGGTTTGTGGAAGAAATCGTG
TATGGATCGCTCCACGGACCTATACATGACCGTGTTGGATGGCTTTCATGGCCCGGACAA
TCAGAGCAACTCCAACCATGCGACCCAAATGAGCGCGCGCATTGTTCGACTTTTGTCCGT
TTGGGTCGATGTATCCGCCTGCTGTTGTAAATTGGTCGGCCGTGCGCTCAAGGCACCGAC
CCATTTTTCGTCTGCGCATAACATTTTTCAAAGGTAAAAAAGGCTTGCGACCACAAATCA
TGCGAGCAGTCATGCCAGTGCCAAGAGTTCATGCCGGCGATATGCCAGCGGCCGCATACT
ACCACACTACAAAAAATACGCAATTTTCGAGCTGGACGCACTTGCCAGCGGGCCAACACA
CATGCAAGCACACAAAATGAGGATCTAGTTCCATCACGACATCTCATTCATGGTTATCAT
GCCCGCACACCACGTCATGGACCCCTCGTCTTTGAGGTTGAGCATGTCGGTTTGCATCTT
CTCGAACCAATACTGCCTCCTCGGGGACATCGTGCTCATGTCCACCTTCATTATCTCGAC
TCCCTTTGTCATGCAAGCGAGCCGTACAGTGGCTGCTTTGATGGCCTTGATCGCTAGCAT
CTTCGTTTGCTTCTGCGCCTCCAACGAGAGCTTCTTGTTTTGTATGTCCATGAAGACCCT
AATTTGCTCCTCCTTGTCTTGCCGACACTTCTCCTCTCTTGAATCCTTGTTAGTGATCAG
GCCTCACTAAGTAGCTTGCAAGGTAAGGGATGTCGCCTAGTGTTTGTCCTATTTCTTGGA
GTTGGTCTTCCCTCGCGCTTCAGCGTCTCCCCCTGATCAAGGTCTTCAACGGTTGCAGCC
CCTCCCCTACCACGCGCCTTGATGGCGGCGTATTGCACTTTGAAATTTTCTTCGCCGTTG
ATGATCATCCAACAATGAGTGAGGTTGAAATACTTGCCTTCATTCATAATGAATCTATCT
TGAATGCTTCCAAAGCTTGGAAGACCTATAAATGGATAAGCAACATTTAGAACGAGTGGA
CAAGTGGACGGGCAAGCTAAGGAACAATCAAATAAGCAAGCAAGTCGGCCATACCATGCC
ACTACTGAAATTCAGAAATTNNNNNTCTGCCATGGCAGACGGCAAAGGCTTTGCCGTC