morexGenes - Barley RNA-seq Database

Contig contig_41749
Source Contig contig_41749
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41749 (7892 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_41749

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57433	1	1301 bp	None	Available	Available	None
MLOC_57434	3	1372 bp	MLOC_57434.2	Available	Available	LOC_Os03g58350.1, FRAME:-2, EVALUE:4e-54, 13103.m06410 protein OsIAA14 - Auxin-responsive Aux/IAA gene family member, expressed
CDS Structure of MLOC_57433

CDS Structure of MLOC_57434

Contig Sequence (7892 bp)

>contig_41749 7892 assembly3_WGSMorex_rbca.fasta
TAACCCTGCCCATTGGGCCTCCTCCGTTGATACGTTGTACCGGTCATAACACATGGTGTG
TGTGGGTGTGGAGCGTGTACATGTATAACTGGAAGTTGGTTATGCTTGATTATTTTACAC
AAGTCCGTGGACGGTTTTCTAGCCAGATGCAGTTGCTGTGTGGTTATTTATCGTAAGTAG
ATATCCATAAGAACAGTTAGAATAATAAAATATGTCAAACAAGAAGAGAAATCTTTCCAC
ATGGCGTGTGGGTGTGGTGCATGTACATGTATAACTGTAAGTTGGTTATGCTTGACTACT
TCACACAAGTCGGTGGACGGTTTTCTAGCGAGACTCAGATGTTGCATGGTTATTTATGGT
AAGTAGATGTCCGTAAGAACACTCATAATAGGGTCCAAGGAACATGAAGAGAAATCTTTC
CACATGGTGTGTGTTTGTATTTCTGTATGTGTATAACTGTAAGTTGGTTATGCTTGACTA
TTTTACACAAGTTGGCGGGCTGTTTTTTTTAGTCAGACTCAGATGTTGCATGGTTTTTTA
TTGTAAGCTGATATTCATAAGAACAGTCATGATAAAAAAATCTGACAAACATGAAGAGAA
ATCTTTCCACATGGTATCTGGGTGTGTGTGTATGTATGTGTATAACTGTAAGTTGGTTAT
GCTTGGACTTTTTACACAAGTGGGGGAAGCTATATCATTGGGAATAATATCTTAGTTGGT
TACCTTTGTACCATTTGTCTGCCTGCGTACAACATCACCGATACCATGTCACCCTGTAGC
CCTGTACTCAATATTATACAAAAGTCTCATGATGCTTGCTGCTTGTCCATCTCAACAGGC
ATGAAGTGAATATTCCGATCTGCTTGAAGCTCAGAATCGAAGATTTCCTCCCGTCATCCA
GCAGTGTGACTCCAGGTCATGTCGATTCCGAAAGAAAGGAGGAAAAACAACAGCAAGTGC
GCCCGAGCAAGCAGTTGATGATTTTGCACGCCTCGCCCTCGATGTAAAATGAACCACTCT
CCTCCAGTTGTTTTTACAGAAAACAGAACACTTACCGTCGTAAACACCCGACATTGTTCG
TTCTCATCTCTGGGTAATTGTCTTCACCCTTTTTACATGATGAACCAATGGACGCTCTCA
CCGTCTCCTTGCCGAGTATGGTTTGCTAGGCTGTGGTCTGTGGAGTTGTGGGCCTGTCTG
CCTGCCCACTGCTGCTGGGGTGTGTGGGATCCCATGACCTGGTAACGCGTGGTACCAGCT
GCCCTGTTGTCTCCCCACTGTCTGATCCCGCATCTGTATCATCATCATGCATGCTTGGTT
CTGGTTCATGTGGGTCTAGTGCCCCTTGTCCGTAGCTAGCCATCGCCTGTAAGAAGAATG
TTCAACCTTACCCTCTCGCAATCAATCGCCATTGTTTTTTACCGGGCATGTGTGGTAGGA
CGAGTACAATGTTCAACCTTACGAGTATTTGTCTGTATCGGCAGCTTCCGTTTTGTCCGT
GCCGACAACAAAGCCAGCGGCCGACGCACCGACCAGCCTTCAAAATGAACGGACGTCGGC
CACGACCCAAGGTCTCAACTAGTTCAGACTGTCGAGGGTGATCATCTCCTTCTGTCGATT
CACAAACCAAGCCTTCGCCTTCAAAATGAACGGACGTCGGCCACGACCCAAGGTCTCAAC
TAGTTCAGACTGTCGAGGGTGATCATCTCCTTCTGTCGATTCACAAACCAAGCCTTCCTT
CCCGGCAACACGTTGTTCTTGTCCATGCTCATGAACGTGAGTGCCACCTTTTTAGCTTTG
GTGTCCGTCATGGTTGTCTTGATCTCGAGCTTCTTGAGTTGAGCGGCCTCCTCGATGTCA
ATCTTCCATCCAACTCTCAAGTGCGGCGTAATGCTTGTTGCACTCTTGTTGAATAAACCA
CCATCTTGTTTGTACTGAGTTGATGATACGAGTACTTGCAAATTGGTAGGGAGAAAACTT
TCTTTGCTCATGGAAGGTTTTGTGAACCCTTGTTCAAAAGATGGAACATTTTTGCTCGGC
ACCTTTTATTGGATCTTCCTCTATCTTAATCCAACTCTCACAAATCAATTTATCCTCATC
TTGGGTGTATGATCCCGTGTGAATGCTTTGCCTTCTCTTGTGTGCCTCGAACGTTTGGGT
GAGCTCATTGATAAACACCAAGGGCTCTTGCAAAATGTCGACCTCGTCCTCCTCATCTTC
ACAATACAAGTCATCATCTACATGCCATGAGTTGCCATGGTCGTCCTCCTCTTCATCATG
GTTGTCGAAATCAGTGTCCTCATAGTGATCGTGACCGTCCTGGCTCTGGGTCTTGTCGGG
ATCGAAAGCCTGGCCTTGGTCGTGGTGCCCTCGCCACGACCCTCAAAGCCGACGCTCTTC
ATGAATGACGAGCAATCAGGGCCGTCAGCTGTGCCATTCCATTGAACAACTTGTGGGCGT
TGGCGAAACTTGCCGTCGAAAACGATCGGGGTTGCTTCCTTTGCGTCCCGTCAGACGTGT
GTCTAGCGCCACTATACCTCGGTGTTACGTTGAGGTCGATGACACCCGTGGGCGTGGCCG
GAGCAACCATGCTGCCCTTCGACGACGTGGAGAACGTGTCTGCCCATGGCCGTAAGGCGG
CGGACCGGGTGTGCTAGACGGGCACAACGACCTGTACCGAGGAGGACGACCGGCCAACGA
TCCCGTGCTCGTCACTACCATGGCAGCGACCGAGAGGATGACCGGTGGTGGTCGTGCCAG
CCCTAGTATGAGGAAGGCGTGCGTCTTGGATACGAGGGATTCCATCTTCCCGTCATCGGC
AAGATGCTTTGCTTGACGCCGCGCGCCGACCTCGGCGGTGTAGTTCGTAGACGCCTTCAT
CTCCGTCGTCTTTGCCCGCCGAGCCCTCCTTTTCGCCGCGTCGGCATCGAGCTTGGCGAT
CTTCGTCGGCGTGCACTCGAACTGAGGCTTCCAGGGACCCTTGTACCCTTCTTCTTCGTC
GCGAGGGCGCGTGGCCGCGGCCGCATCGCCGAGGTTCGTCGGGTCGTCGTCCATGAATGA
GGGAGGGAAGGGAGCACGCGGGAGGGTTTGGACGAATTGAAGGGAAAGTGGGAGGGGTAT
GTCTCCGATTGATGGGTCACGGAGGGATAAAGGCATGCGTTCCATCCGTCCGCGTGCTAT
TCATTACGCGGCAAACACGATCCAAACTTGAAACGAGAATGAATCAAAAACAGATAAAAA
ACGGACATTTATTCGTTTACTCTCGCGCGTTAAAAAGATCTGTGGTGGTGGGTTGGACAT
GCCCTTATCCTGCGTGCGTTTCGCCGAGGATTTGGTTGCTTGTGCAGCCATATGGCCCTG
GAGGTCTGGGGGGCGGGAGGTCCCGGTTATGCTGCGCGTGACGTACGCTGCAGTGACTCC
TCTACATTCGTATGCAGCGATTCCTCTACGTCCGCGCCGCTGCACGGAGCAGAGACCTCG
GGATTTGTGCGTGTTCCCATTTTTTGCCGAAGAAAAGAAATTTTGAGTTGTTGTTTTTTT
GGGCAGAAATCGCTGAAATCCGAACATCCGATACTGTTGCTGGGGCTGGGGCTCGGGCAT
CGATGTTTAGGTTTTGGTTTCGTTGAGCTGGATCTGGCTCGATGTGTACGTACTGTTCTC
CACAGGAAAAGAGAACGGGGAAATAGCGTAGTGGTGGTATGGAAGGGGAAGGGAAAAGCG
TGGGGGAATGGCAATGGCGCTGGCGCCACAGGGCCAAGGAATGATGAAACATCGCTTCTT
GATCCGACGTATCCTGGGATGGGATTGGATGGGATGGACACTTCATGCGCCACCACCACC
ACCACCAGTTCGACATGACTTGTAGTACATCATCATCATCATCAGACACACATAAAATTG
CATCTCTCTCTCTCTCTCTTTGATGATCCGTGTCCCAGTTCCTCGGCGATGATAATACAA
AAGGGAAACTTGTAAAACTAAGCAGAGAACTTATCTACTACACGGACACCCAAGTCCCGG
TCCTTTCTTACATGGCTGCCTGAACCTCTGGCTGTACAACATCAGTACGTGCATGTACTC
TACTACCTACTACTCCGACAAAACAGTACTGCTAGTCTGCTACCGCTACTGCATGCTACC
TGCGCGCCGATCCGGCCGGACTGGCCGCCGGAGCTCGCGCGCCTGTGAGTCCCTGGACCC
AGCCTCGCGTTCGTACCGAGCGGGTGGATGCAGATCAGTACACTTCACAGAGCGCGCGTG
CGTGAACCGGCTAGCTCACGGGTCACGGCCTCCGTCGCCGTTCACCCATGGCCGGCCCGA
TCATGCATGCGTCTGTGTGTCCGTCTCTGATCATGAGCCACGTACGGCAAGTTTCCATCG
TCTCCGGATCGCTTCATTTATGTATGTGTGCACGATCGTGTCCTTTTCGTCGCCATCATC
GTGCTTCCGAGCTTTTCATTATCCTCAGCCTCTTGCAGGACGAGATGAACATGCTGCAAA
ACCAAACGAAGAAATCACCCGTTAGTTAGACTCATTTTTGGTCAGTTGGTATATGCAAAT
TAATTAAGATGGGTACGTGTTGGTGTGCTTACTCCCAGGGGACGTCGCCGGCGAGCATGA
GGTCGCCGTCCTTGTCCTCGTAGGCCATGGCGAAGGGGGCGTTGTCCGGGGAGGAGCAGG
AGGAGAAGCAGCCGAAGAGCGCGTCCAGCGCCGCGCGCAGCTCCCGGTACCCGCCGTACG
TCCTCAGGTCCACCTTCCGAAGGTACGGCGCCCCGTCCATGCTCACCTTCACGTACAGCC
CCCCTCCTCCTCCGGCGGACCTCTTGCTCCCCGCCTCGCCGGCGCCTTTGCTCTCCTTCG
CCGCCGCCGACTGGAACGTGCTCTTCCGGTACGCGCCCACCGGCGGCCACCCAACAACCT
GAACCCTGCGCGCACAGACCAAAAATCTCCATCAGCTCCTGTCCCGCACAACCAGTCCAT
ATGCCATGCACGTAGGCCGGCCGTAGCCTTGCCGCTAGCTTACTTGGAAGCCGGTGCGGC
GTCGTGGTCGTCGGTCCCGGAGGCCTCGCTGGCCGCCGCAGCCACGGTCGACGACGGCCG
CTTCTTCTGCGCCGCCGACGACGCGCCGAACCCCCCGTCTCCGCCGCCGCTGCCGGGCGG
GCCGAGCCGCAGCTCTGCGTCGATGATCTCCATGGACGGCCGGCCGGGAAACGAGAAGTG
CGTGAGCCTGCTCGGGCGGATGGTGGAGGCGGAGCTGGGCCAGGTAGCGTGGCGTGTGGT
GGAGGTGGAGGTGTGGGCGTTGCTTCGCTTCGGTTGCGCGCCTGCCCGCCCCCGCCATAT
ATAGCGCCGGGTGGTGGTTGCGTGCTGGGTCGGTCGCTCGCGAGGAAAGGGATGGTGATG
GCGCGGTGAGGAGGGGAGGCGGGTGGGCCGGGGGGACAGCGCGGGAGGTGCTGTGTCTGG
GCCCCGGCGGACAGGCGGGCCCGGGGGTGATGGACCGGGTCGGGGCAGATTCCCGGCGCT
GCCTGGTGGCGGGCCCCCGGCCTGTCTGGCACATGCGGCGGGGCCCTGCCGCCGGTGTGG
CGCACGTACGTACGTGTCGCGCGCGGTGGCTCGCCCAGTCTGGTCTGGTCTTCACCACGG
TCACGGCCAGCCACCCCCCGGTCATTCATGCATGCATGCATGCATGCCGCGCTCTACGTA
CGAATACGTTTTTTTTAGGAAACCCAGGTGAATTAAATAAGTCGATGGTACCACGTGCGT
GCTTTGTTTTACTTTAGTCAGCTGATCGCTTTTTTTTTTCCTACCCTGCTTACTTATGCA
TGCTGTAATTATGTCATGTGAGGACGTACGTGCACGCTGCATGTATGGTGGCATGGTGCA
GTCCAGCGTTAGAGTAGACACGATGATCTCTTATAGTTTTATACTTTGCCTGGTTCAAAC
ATGTTCATGAAGCAGAGACGACATGCATGAATGAATTAGCTGAAGATCGAGATGCCGATC
GACGTACGTACGTAGCCATCTCTTGCACCGTCCGTCCGCCCCACTCTTTTCTTCACCTGG
CACGACCAAGACGCCACAGTCCACTTGCTTTTGCTCGACCCAACTTGTGATCAACCAGGT
TACGCAACGATCGACAGCGTGACGGTACGGTCTAATCCTAAATCCCGAGGGTCTAGGCGT
ATATAGCACTATACCAGCCGCACACGTATGCATCTATCTATATATATCACGGCCAGCTTT
CGTGCGTGGATGCCGGTGGGACCGTGGCGAACGCACGTACGTGTCGGCGCGCGGGTCGGC
CAGTCTCTGGCCTTCAAGGTCATGAATGTCACGCTCTACGTACTACCTACTGTAGTACGA
AGCCTGAATAACTATTCCAGTGTGGAACGCAGAGTCACACACTGGTGATGCATGCACTGG
TGCTCACGCTGTGATTTTTTGAGGGCGTGCCCGCATGATTCTGAATCAGATGATGCATGC
ATGCCTGCCATGCATGTATGTTACAATTGGTAAATTATATTGTGGAACGCCTTCCTTTTG
TGGAACCAACCCATCAGGGCTGTCGACCACGAGGGTGATCTCGTCAATCTCAAGATTTGA
TATCGGTACAGTATCTCGAAGGTACTCATACGCATAGTATCTATGTGTATATGTTCATCC
AGATAAATGTATATACGTGTATACAGAGTTATATACATATGTGATATGATTGCATCGTGT
TAAAAAAAACTGATAAACTAAATTCGTCCATGACTATGGTCTCACTCGCACGCACGCATG
TATCGTATGGTTCAGTGAAAACGCATTAATCCCTTGGTTTTACTTGGCCTGGTCAAGTTG
TAGTAGTAGTAGTTCTGGAAGAGACAGCATTAGCTAGCTCCTCATTCATGACACCGACAC
ATCCACTACTTCTTCCACCCGCGTTTCCGCGCTTTTCCTCACCTGCTTCCACCCGCGGTC
ACCTTTTTCCTTGACCCGGCACGCCAAAGTGATGAGAGACCGCTTGCTTCGTGGAGCCAA
ACTTCTGGTTTTAGCCAAGGCAGCTGCCATATCTACTCCTGAAATCCGAGGGTCTAGGCA
AATACAGCAGACACGCAGAGACGCGGACGCATGCATGCATGCATGCACATGACCGGCCAG
CTTTCGTGCGCGCAGGGGTTGCCCAACGAACCCAGACAAGATGGCGAGCTGGCGAGGCAC
GCAAGCGGAGGCCCATGCAACCCTCGCCCGCCCGCTTCTGCGTTGTGCGATAATGCATGC
ACCGCCGATGATAATGGAATAGACAAACGAAACAAGCGCATATGCACGCACATCTCGTGC
CGTCGACCCGGGGCGGCCACGCCTTTCCCGCTGGGGCCGCGGGGTCGTTGCCTGTCCCCT
CGTGATCGCATTCACGGCCGCGGCCAACCAACCGGCCACGGCCAGGCCAGCTAGCCCAGC
CACACTCCAAAGCAGCAGGCGAGCCCCGATCTGATTCCCTGCATGGCTTGCTTGCATGAT
TCTGGAAGAAAAAAAACGATCGCATGCGACCTTGTCGCCCTGATTTTTCTTCTTCTTCTT
CTTCTTCTTCTTTTGCGTGCAAGAATAGCTAAACGAGAGAGAGGGTAGAACTGCCGATGT
ATATTGTGCATGGCAGGTACATAGAGCCGACCCCCCGCCTGGTCTCCCGAGTAGATAGGC
ACGCACGCCATCGTGGAGAGGTGGTTGAGATCCTGAAGACTAGGACTACATACAACAATA
TTGCATGGTACATGCACAAGTGTATATGACTCCAACATAAACGACTCCTACGATACAAGA
CGCTCCAAGCAAAAACACCTAACATGTGGTGAATATAAATATAGCCCCAAGTAACGTTNN
NNNTGAATTGAAGACGAGAGAGGGGATGCGTT