morexGenes - Barley RNA-seq Database

Contig contig_41743
Source Contig contig_41743
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41743 (6466 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_41743

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57429	1	1821 bp	MLOC_57429.1	Available	Available	LOC_Os10g41580.1, FRAME:-2, EVALUE:2e-42, 13110.m03882 protein protein binding protein, putative, expressed
MLOC_57428	1	894 bp	None	Available	Available	None
CDS Structure of MLOC_57429

CDS Structure of MLOC_57428

Contig Sequence (6466 bp)

>contig_41743 6466 assembly3_WGSMorex_rbca.fasta
CCCGTCGGGGAGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAGCCCGTGAACTTAGCATGTAATTCAGAATTGCAATAAGCAAGCGGGG
TCTCTCAAATAGAGTCGAACTGACCAAAAAAACAAACTAAATTAACCAAACTTGCCTGAT
GTTGAGGCAATCAACTCGTGTACTTGCGATTTTTCCCCTTTTCATGGTTGGCTTTTAACT
ATTTTTTATGTTTTTGCATGTCTTATATTTTTTATAGGCTTTTATTTTAAGTATGAGATT
GAATCTTTTTTCTTTATTTTTATGATTTTCTGAAAAAATGAATTTTAAAAAGTTTGTGAA
TTTCCAGGAAAACGTGAGTTGTGAAAATTTAAAAGATGTTCATAACTTAGAAGGCATAAA
ATTTTGACAAAAAATATTCACAATTTTTAAATCAATGTTACATATTTTAAAAATATTCAT
TTATTTTGAAAATGAATCACAAATTAATGAAAATGCTCAGATATTTTTTTAAAAGTTGAC
GAATCAGAAAATGAACCCAAAAAACCTAGTAAATTGAAAATAAAAATTTACCAGTATCTA
AAGGGGGCCATGGACCGGCCCGTTTCCTAACAATGCTCTGAGGGAACTCCAATGCGTAGA
AGTGCAAATTACATTTGAAAAGAAGACATGTTGTCATGTGAAGCATGGGAAAAAAATAGT
CTTGTTCTGGTCATTAGTGTTGTGCAACCAATGTTAACTTATTGGAACTGTATCTATGAG
TACTTCCATGCATGCAACACTGCGGGCCTCTATCGATTGCAAGCTTCGCTCCGACATCGA
TGGATAACTAAATCGTGGGAGTGTCAAAAGTTGGCGTCTTGCTTGGCACAACTTCAACAC
ATGAACCCTAGGGCTACAAATGGCAAAGATAAGGTGATTATATGTTCAAATTCATCAATT
ATTTTCTTCATGGCTCGTATGGATTGGTGGCTAACTTCTTTTCTCACGTGTGGTATGTAG
CTCAACATTGCTCAAGAATGGCTCAAGGACCAAGGGAAAAAAGGCAAATCATTCGCTTTG
CACCACTGTTGCATGGAAATATAAAATGAGGAGAAGTGGAAGAGCAGCGGGAACAATGAC
ATTCCTTTCAGGAAAAAGATCCAGATGGAGAAGCAACACAAGATGATGATGATGATGACG
ATGAGGATGGAAAAAGACGCTCAACTCCCAACTTGGTTTGCTCCTAGGAAGAGGCCCCAT
GAAAGAGAAAACGATAAGGAGAAAACTGAAGAAGGGAGAAGATAATGACGTGAGGGAATC
ATTGAACGCCCTCATGACTATAAGAAAGAAGATGGCGGAACAAAATTTCCGAAGGCCAAA
GAAATCGAGGAGAGGAGGGAGGCCGAGGAGGCTGGTCCGGGGAGGAGCGCGGGGCCGGAG
GAGAAAGAGTGCGGAGGTTGGGGAGATGAAGGTGGTCATGGATATGTTAGTATTTAAAAA
ATGCATATTCAAAAAATGTTCTTAATTTTAAAAACAAGCATTTGAAAAAGATTTTTTTTA
AAAGATTGTGTATTAAACAAAGGAAACAACATTAATCAGCCGACTGATCATAACTTGCGC
CTCCGCCAGGCGCTGCATCGTCGGATCGCTTCATCCGATTTCACTCGGGCCATGCTTGAA
GTGTTGACACTGAAGCACGCAGGCCATGTGGTCATTAGGTTATACCCCATCCGTACCTAA
ATATAAGTCTTTTAAAATATTTCATTAGGTGTCTACATACGGAATAAAATGAATGAATCT
ATACTTTAAAATATGTCTATATACATCTCTATGTAGTTTATTAGTTGAACCTCTAGAAAG
AGGTGTTCTGACTTACATCCTTCCACATCATATTGCATTGTTGCCTAACTGCATGTCTCC
CACGTGACATGCCGTTGGCTCTTGATGATTTTTTGGACAACTTCTACAACATCACCAATG
TTGTAAAAAAAGAATCTGCATTAAAGCCTATGTTGCAAAAAGAAATCTACAATAAAATAT
CAGTTGTAAAAATGTTTGTAAAAGCATGAAGACAAAAAAGCAATTCTGTAATAAAGCCTC
TGTTATAAAAAATACTACAACAAAACCTCAGTTGCAAAATAATTATACAACAGGAGCTCT
GTTACAATTTTTTTCAACAATACATATGTTAAAATGATGGAGAGCGCCGATGCGCGAGGT
CTGACGGCCCGCGAGAATGTTCGCCAAAACATTACCGATGATTTAGCAAAATATTGTCAT
GGCGATTTGAGATCATGATTTTTTTTCTCCCGTTCAACGGGCCCTTTTTGCTAGTGGTAG
ATAATATGTTATGTGTACACGCTAAACTATTTTCAGAATTTTCAAACACCCATTCAGTGA
TTTAGTGATTTTGGATGGGTGGTGCACCGGTATCGTTCCCGTGTGGTGAGTTCATATGAA
GTGACATTTCACTGCAGGTAGTGTATCCGTAAGCAGTAGCACGCGTTCACCTCCATCTCC
GGGGCACTCCCCTCTGAAGCATCAACCATGGACATGGTGACGGCCGGCCGCGCGAAGGCC
TGGCCTGTCTTTGTCCAGTGCAGAATGCTGATGATCAAAGACGGAGCGCGGCGTGTGAGC
AACCGACAGCCCTGCCGTGACCCGCTCCGGTACGTCCGATCGGGATCGCGCGTACGGCCA
CGGGCGCGCGCGTGTTTGCCGCGTTTCCCGCCACTTCCTCCTGCCCGCCCACCCACCACA
CCCCACCCTTCGTCCCCACGCCCCCGCCCTGCTTCAACCAATTAACCGCTTGGCTCCCCA
GGCGGCAACTGGCACACTGCGCCGCTCACCACTCCGTAGGCCTAGCCTAGCCTAGCCGTG
CCGTGCCGTGCGGTGCGCGGTAACAAAATGAGATCAACCTAATTAATCTGTTACTAGCAG
TAAAAACTGTCACGCAAGATTCAAATCAGCAGTAATGATTTACAGCATCACTAGCAAAAG
AGGTGAAGCGATCATGGATGGAAGGATCAGCCCACTAGCACGGGAGGGCAAAGAGAGGAA
GGAATTATGCACCCTGTCTTGATCTGTTCTACAGCTTTCTCCATGGCCCCAGTTTCATGA
TCCAGCGGCGGCTGACCCGTCTCACGCGAAGAAGACTTGCACGGTGCCGGTGACGGGGCA
GCGGCACGCGGGGCAGGCCGCGGCGGCGGCCGTGCCGGCGAGTGCGGCCGGCACGCCGGG
GTCGCACGCGTCGCACACGCAGAGGTGCCTGCACGGGAGCAGCACCGTGGACGCCGGCCG
CAGCCGGCACGCGCGGCACGGCCTGGCCGCCGGCGGCGGCGCGATGACCTCCACCACCCT
GTCCGGGTCGACGAAGCCAGACTCGGCGTCGTCCGCCGCGCCCGCCGCGCCGTCGTCGTC
CAAGGCGGCCTTGCCGCTCCTCGCCTGCGCTGTGGCCGCCGCCTGCTGCAACTGCGCGTG
GAGCGCGGCCGCCGTGGACTGGTCGGACATTGCCTTGGCTTGCCACGACGCGGCCTCCGC
CCTCAGCCGCGCCAGCTGCTCCTCCAGCTCGACGCCGCGCCGTGCCGCCTTGAAGGTCTC
CGCCTCCATCTCCCTGACCCGCCGCGCGGCCAGCGCCTCCGCGGCGCCCAGCAGCGAGCG
GTTCTGCCGACGCCTCGTGTCGGCCAGCGCAAGCCGGAGTCTCTCCGCCTACAAAGACAG
AACGAACCCACCATCATCATCATCGTCATCGCGACAGCCACCATGTAGATACAGTAGATC
GATCGATTGCAAGGCAAGAACGAATCAAGCAAGCGCGCGGATCCTCACGTGTTCCTGGAG
CAGTCGGTCGATCTCGTTACTGTACTGCCCGCACTGAGCGGCGAGCTCGCCGGGGAGAAC
GGAGGACGGCGACGACGACGTGCACGCCACGTGCTCCGAGCCTCCCTCGTCGAAGTCGAG
CCGCAGGCCCGTCGCCGCCGGCCGCCGGTGCAGCTGCGCCAGGTGTATCACCTTGTGCGC
CGGGGAACCCTGCGGCGCCTGCAGGGAGAAGAGCCGTGCCGGCGGCGCCACGGCCTCGCG
CGGCCGCTTCCGCACGTTGCCGCCATCTGCGACTGCATCGACCCAAGATGGATGTATGTC
AGTTAATGACCTCCTCAATCAATCACAACTGCCGCCGAGAACGAGAAAGCAAGGTAATCA
AGCAGCAGCACGCGATGCGTCGGTTACCTCCATCTCGACGAGAGAAATCCATGAACAGGG
GAGGATGGTGCTGCTCCATCGGCGGCGGCGGCGCCATCTCCTTGCGCGGCTCCATGGGCG
CGGCGCAGCCTCTGCCCACAACCCGTACGCCCAGATCACCCATCCGGCCGGCGATCGCCT
CGGAACGGAAGTCGGAGACGGCTAAAGCAGCAGCAGCAGCTGCAGCGGCGTGGGCGACGC
GCAGGCGGCGAGGACGAGGAGGCGTGGCTGCCGGTGGATGCTGCTGCTGCTGCAACACGG
CCGCGCCGCTGCCATTGCCCGTGCTATTTGAGGCGCGAAGCGCGTGTGGAGGAGTCGGAT
GGGATGGGGTGGGATGCGATGGATGAGAGAGTTGCGGCGGGGGGTGGGCAACGCAACGCG
ACTCAACTGTTCCACCGTCCCTCTCGTCTTATCAGGGTGGCGTGGGCGTGGGCTTTCAGC
TTTTGCTCCTCTTTTCTCTCGCTCTCTCCCGTGATGGCAACGTCAGCCTCGCCGTCGTGC
TCGGCTTTCCCTACGTGCGCCACCCACCCACCCCCCACAGCTGCGTCTGCATGCACGGCA
CGCCTTGAACAATCCCCCGTCCAAAACCCAACAGCTCAAACCAAATGCTTTAACCGCATT
CCTGCGTCGTTGGATCTACACGCGGATCAGGAGGCCAGCCATGGACAACGCATTGCACTG
CACGTAAATTGATTAATCAACAGGGTCGTTCTCGCGTCGTATTAATTGGGCATTTGGACG
CTGTTCCTCGGTCCTCTGCCCGAGTAAATCTACTCCCGGCAGTACCACGACGGCCAGTAG
TAGCAGGCATCCGATGCTAGGCTAGCCTCTCTTGACTCTCGCGTGTTTTGTTCTGTTCAT
CCGTTCGTTTGGTCAAGCCTCATCAGGCGGGGAGCATCTCACTATCTGTAGCCGTGGCCT
TTCGTTCGGCGTACGGGCCGAGAGGAAAGAGACGTTGCACTGCGTCTGCGTCCACATGAC
AACAGGGAGAGAGAGGGAGAAGGAAACGTCGGTTTGACGGAGGCTTCTCCTCCTCTGCAC
TGCACCGCGGCAGCCAGCCAGCCAGGCGTGAGATGAGAACGAAAAGAAAGCCAAAGCACA
GGCCAGGCCACGGCCAGGCGGCAGCATCGATGAGGTTCCGACTCCCGAGCAGGAAATGCG
GGCAGGAAGGCAGGCAGCGAGTTGAGTATTGGATTCGGAGGCACGCACGGCCTCAAAAGC
ATCGCTCAGCGCTCGCTGTAGCCTCGGCGCACGCAAGGGACCGCGGGCATAGGCTCCTCT
CGAGATGCGCGAAAGGGAAGACACATTGCTACTCCATTTCCCTTTTTTCCTTTTCGTGCA
CCGTCGCCAGGTCATCATCCCCAACGCTTGCCGTGTTGGTCAAGGTGAAAGGCCGGTAGG
TTTTGAAAAATTCAAAATCAAATCTAGACTAGTTTTATTGGAGTAAAGAAATTTTATTAT
ATTTAAGTTTGGCATTAATGTAGACCGAAAATTAAAGTTTAGCGACCCGCAGATAACCCA
GAAATAACACGCACGAAGGAAGCTATCGCCCCATCATGACACATGAGAGAGTGGTGGCCC
AACCATAAGTTCACTCGGCCTCAATGGTTCTCTTACATATGTGGATCCTTGCCTGAAAAA
AAAACATATGCGGGTCCGAGGAGTGGTTAGGCTGTTGGTCGTTACATGAAGGTGAGTGTA
GCGGGAGAGAACTATCACGACTAGGACCAGAACGGTGTCGGCATGTATCTCATTTTGTCC
TAGCTACTTCGTCTTCCTCACGTTGTGATCCATTTGAACTCGATTTGTTATTAAACTAGA
GATATCAAGAGGGTGGCTAACATGTGGTATCAGAACCACTCCATCACTCTTTGTCGCGCT
AGAGACGCACAAGCGGGCAAGTGGTCGTGAGCAACTCTTTGATGCCATAGATCCAACACT
CAAGGCGTACCTCGACAAGCTCTAGGAGAAGCCGACGAAGGCGAGCGAGGAGATCTCTGC
CAATATCAAAGACCTCACCAAGCAGATCAACTACCAAGGGGCGGCACAGGTGGAGGCGCT
CACGGCATGGAAACCAAATCTCGAGGCTTGTTTCTCAAAGCTACACGACATGGTGGGGGG
CATACAACATGCGCAACCGCATCTGGAGCGGTCACATCGAGTGGATCAAATGCGCCATAC
CTCTCTAATCCTGTGGTGTGCATGTTGGGTTACGTAGCATAAATTC