Map Locations of contig_41716 (7130 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_41716

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57405 2 1834 bp AK359804 Available Available None





CDS Structure of MLOC_57405






Contig Sequence (7130 bp)

>contig_41716 7130 assembly3_WGSMorex_rbca.fasta
GGGCAGCGGCGGCTGGCACCTGCCGCTAATACGTGAGGCGGCCAGCCTCTTTTCTGGTTC
CAGCCAGGGCCCGGCCAGCCTTTTTCCCTGTCCCGGCCATGGCACTTTCCCCGTTCCTTT
TTGCTGCTGGCCGCCATGCGTTTTGGCAGCAGGTGCCGGCCGCCGCTGCTCGTGGCGGCA
GGTGACACGTGTCACCTGGCGCACCTGCCGCCCGCTGAGAAGGGATATTTTTTGACAATA
TGTCCTGCAGATGGTCTTTTCTAACAATTGCGTTCGATAAGGGGTCTTTTTAGACAAAAA
ATCAAAATTTTACTACTACTGCAGGATCAAGCTACTTTCCCCAATTAAAAATCACATGAT
TCGGAAAGAAACATGAATGACCACTAGGTATATATGTTTTGAGGTATGCATGGCCGATAC
AGGGTTCTACTTTCCCCAATTAAAAATCACAAGATTCGGAAAGAAACATGAATGACCACC
AGGTATATATGTTTTGAGGCATGCATGGTCGATACAGGGTTCTGTGCATGCTCACCTCCT
TAGCAGGCCGGCTGTAGTTAACAGGATCCCTTCCAGTCACCGCTTCCAAGAGTAGTACCC
CAAAACTGTACACGTCACTCTTTTCATTTAGCAGTCCAGTATTTACGTATTCAGGGGCTA
CATAGCTGAAAACAATGCGACCAGGTTAATATGTTGCAAACTTATCAATTGCTAATGGAT
AATTCAACTCAGGGAAATGGGGTAAGTGGATATCAATGTGTTCTGCAGTTTTTGCAACTC
AGTAGGGAAAAAATGACAGCATGCCAATAAGAGCTTACCCAAAAGTCCCCATAACTCGAG
TAGTTATATGGCTCTTCCCTTCGCCCAAGAGCTTAGATAATCCAAAGTCAGAAAGTTTTC
CATTGAATTCTTCGTCGATAAGGATATTACTTGATTTGATATCACGGTGAATAACTTTCG
GCTCTATGCCTTCATGCAAATAAGCCAGTCTGCAAAGCAGAATGATTTGTTGAAGGAGGA
TTTTCCTACTTCGCCCAATATACAAGAAACCAAATTCAAGAATACGACATCACTTACGCT
TTAGCAATGCCAAGGGTAATTTTTATGCGGGCTTCCCAGGTAAGAACACCTTGTTGACGC
ATCGCACCATGCAACCACTGTTCTAAGTTACCGTTGCTGATGTATTCATAGACAAGCATC
CTGCAAGAACAGTGACTTAATCATAGTGGCTGCAAATAGTAATTGTTACACAAAAGTACT
ATATACAGAGATCAAGTAAATAGGCTTTGAGAAATGTGTAACAGCTCTCGGATGCCTAGG
CACCCTCTATGAACAGTAAAATAAATAAAAAGGAAACAAAATTAAAAAAATCTGAAACTT
TGCAACATCAAAGATGGTCAAACTTTGTAGGTTCTTATAAGTTTTCATGCCAAAATATCA
TGTAAAAAAAGGTGTACAAACAAGTTTCAGATTTCAGTGCTAAAATTGCTTAAAACTTGA
AGCACAGAAATGTTTTCCATATATAGAGTTCCTTGAATGATTTTTTGGCATGAAAACTTG
CAAGCACCTAGAAAGTTTGATCATCTTTGATGTTGCAAAGTTTCAGTTTTTTTTTGTTTT
TTTTCTATCTGTTTTGATTTTACTGTTTATATGCATTAAACTTTTAAAGGTTATACTTGT
ATCAGCTTAAGAAAACAGACTTAATACCTACGGATCAACCAGTTACTCCGCAAAATAATT
GTGCCTCACATGAGTCGAGCTCTGATGGGCGGGTAGGTGCTAGTGCAGCAAAACAGTTTT
TTCTTATTCATTCCATTCCACACCATCTAGAGAAGTAAAAGAACATATTGTACAATGGAT
TATCTCTTAGTGTTATCTCTAGCAATGCTCCTCAAATTATTAGATGATTAAAATTAAACT
AGGAAATGTGTGATTGAGATAAGATATCTCGTAATTTGGTGAAAAACGTCTTATCTTTCT
TACTAAGAGATCATCTCTTAGCTAAGACAAGGCAAACCTTTTTTTCTCATTCATCATACA
ACCTACATGGCACTGCCAAGATAGCACCATTGTAGGTGTCCTAAGGAGATAGGAGCTACC
TACGACACATCAATACACAATCCATAATAACATATAAGGACAGGACAGGCAGCTAACTGT
TGTGAACAAATATTGGTCATGTAAGGTCATTATGAACGAAGCAGTATCTCGTCACCTAGG
TTCGACTTAATATTTGCAAAATATTGATAAGCATTCATCCATTGAGACTGTAAATCAAGC
ATATACATAAACTTCAATTTTTTTGGCAAATGGCCAACAAAAGATGATAGTATTATACAA
ATGTTTCTTTAAACAGCATTGGCACCTGAACTGCATATAAAACGGATGAATGCTTATCAT
AAATCTCTTACTAGTTACTAATTCATAAAATGATTCTAAATGATGCCTTGATACCTCATA
TTCAACATTTCACAACTGAACAACATAATAAGCATCGAGCACACTAAGATAACAACTGAA
AACTCTTGTAGACTTTCAGATAGACAACAATGTTGCATATTTCTATGTGGGGCTAGTGGC
GGTATCAGATTATATACAATTTTCCTCGGTAGATTTGAGATGACAAAATCTCCTAATCTG
TATCAAGATTTTGGTAATCAGTGCATGCTACATAACCATTGGAAGTATGCCTTCCAATCA
TACAGATTGATATCTACAACTTTTAAGGAAAGAACTTTCAAATTCAACTCAAGACTGTAA
CAAGAATAAAAGAATACACATGAAAATATATAGTAATGTAACCATCCGTGCTTAACAAAT
ATGTGGGACTACAGCTTGACGAATATTGGTGAATGGAAGGGACAAAAAAAAGTCTGGTTA
ACAGAGTGTAAACAAATATTCACCTGTGGCTTCCCTCGACACAGTAACCCAGAAGTCGCA
CCAGATTCTTATGCCTAACATGACCAATGGCCTCAACTTCGACCCTGAACTCTTTCTCTG
CCTGGCCCCTGGAAAACCATACCAAGATTTCACAGAAGTCAATAGTATATTACTCACAGC
ATGTAATTTTGTGGTCTATAAGAAGTTATTCTTTATGGTAAGAATCTACGTTAATGTCTC
TTACACGTTATTAAAAAGTTTTTTGATTGCAACATCAGTTCCATTTACAAGACAGCCATG
ATAAACAACCCCATATCCGCCCTCTCCAATGATATACTCGTTAGAGAACCCATTTGTTGA
ATGCTCCAACTCTCTGAGAGTATACCAATGACCCAAACCCAGGTGAGAGAACTCTGGGAG
ACCCCCCCGAGGAGACATGGACATGGTGCCACACTGAGAGTATTCCCTCTTATCATATGC
TGAACTGCCTTCATCACCAGAGTATAACCCCTGGGACCTATCATATTGGTGCACTGAGCT
GCACTCAATCAAATTATGATCATCAATTGATTTGCTCGTAATCAAGTGAGCAGACATTCT
CTGCGATTCTTTCTCTGGATCTCTCTCCTTCACTGGAAAGATGTGACTTTCTGGAGCACA
GATGTTGTCCACGAAAGCTCGGCTACCAACTTCATCTACTGCAATCTCTTTGGTGACATC
TGGGATCTCAGGTTCAGCAATATCATGATGATTCCCTCGTCTCCTCCAGTATATCAACAG
GAAGCATATGAGGCCTAGGACAAACAGAATGGCAGCCCAAATGCTTATGCCAAGCACAAC
CCATAGTCTCAAACCAAAAGGCGGAGTCCTGGACAATAACTCCACCCGTAAGTTTTCACT
CGTTGACATTTTGATTTCCCTGCAACCAGGAAACGCTTCAGCATTAGGTCATCCTTGCAG
CACATCTTCAGAAATAATAGGATTGCGGTGATATTGTCAGACTAAGTATAAAGAAATCAA
GAGATTGAACAACAAATTGGTAAGAACACATAAAGCCATCATCAAGGTTACCAAAAAGAG
AAGAAAATGGCCAGTTACATAAAGGTTATTCAAGCAAATCACACAAGACTGGCTTTACTA
GAAACCAAGAAAGTGCTGATGGCAGTCCAGAAAAAAATAAAATACAGTACTAACATAATC
CCTTCACTAAAATGTAACAAAATGGCACAAGATCATGTAGAGATCTTTGTCTTCACTGAT
TATAGAATTATACAAGAATTAAACACCGAGTTACAGATCGTTTACCTGACCGACAACTGG
ACAGTCACTTCCAGCTCATAGACCAGACCAGCAACACGAAAAACCTAATTCAACATTGAT
AAGAATGTTAAAAAGAAGTTTATCTACAGAATTCAGGAAGTTTAAACGATCAATTTGTTC
ATAATATATGAAATGAATGACCGTTATAAAGCAATTGATTGGTGTCTGAGTGCAATTAAC
ATCCCAAATGCTAGACATGGTAAATCGAATGTTTTTCATGGCAATTTCTATTGGCGCGGG
GATGGTAAATTTAGTTTGCAAGCACTGGAATTTCCTGGCAAGAAATGAACTGATGGGGAT
TTGCCATGCTCGCCAACTTAACTTGTCATCCTCGGCAAACACAACTTGCCATGAAAAAAC
ATTGGATTGCCACGCCAAAAAATCTGATGCTCGCTGGATATTGGGGTCCATTAACATTAC
CTCCAAAGCTCAAACATATGATACTTATTCTAGGAAGCAACCTTGAGTACGGGATGTTTC
CCAGAGTATCGATGATACATTGACAAAACAAAATAATACTTACACAAAACTGTATATATG
ATGATCAAGAAAAAAGAGACGATCCAGATTTCATAGGGCACAGACTGGAAGCAGAGATGG
GGCAGTCCAGTTTATAGATAGAGGATGATAAAGACCAGCAGTTTGGCTTCAATTGTGAGC
GACATTCATCCAAGAGAACCAAGAAACCATAACTTGGTTCACCTACCAACCACAGGCAAA
CACGTTGAACACACTAACACTGATCACATCTGGGGCAAATAACTCCGGTGTCTTCCATGG
GAGCACCGTGTGAGTGACACAGCACGCATCTTATCGATGTGAGCCTTGGTAGGCAAATAC
ACAAGCAACTAGCGTGCACTCTCACGAACACCACCAGCAGGCAGATATAAACCACACAGC
CTCAAACTACAGACACCTTATCTTATCAACCATGCTCACCTGGGCATCATCAAGCGGGCC
AAGAATGGGCAGGAGAGGCCGAAGAACCCAAAGTCGGCAACCCGTCCGCCACGCCACCGC
CTGCGCTCACGGAGACCACCATTCGGCCCCGCCACCACTGTCCACTGGTACTCCTACTCG
AGAGGCCGAGAGATCGATGTGGCCGAGGCCAGCCTACAAGTCGAGTGTTGCTTGAGGCGA
GGAGATTTCTCTTGGTTGGTGAAGTGCTGTCTTCCTTCCTGGCCCGGCACACGCTTGTTG
GTTTCTTTCGGCCGGGTGTCTGTGCCTGGAGTAGCTTTTTTTTTTTTTTTTTTTTTGCGG
GTGCCTGGAGTAGCACTCCACCAGCTCGTTTTCTTTTTTTCTTGGTTGGATTTTGGTGAG
CTGTATCCGGATCAACTTGTCTGCCGAATTAAAACGCCAAAATAGATGAAATTTTCTTCT
GTGGAAAAAACAAAAGGTAGGTTCATGGGATGAGACTATTCCACACTTGTGAAGTAAGGG
GTACCATTATTTTCTGTGAACGTGTGCTATCGTGACAAAAGCTGTTCGATCAGGAATATC
TTGCTAGGTTGGGCTCCCTTCCTTGGCTAGGCATTATCCTCTCCTCGGTTCCTTTGCTTT
ACAACTCCCACTGATTATAGGTGAAAGGAAAGCAAGTAAAGCAAGGACGCACTCGTGTAA
AGATTGTACTAGCGGCTTTGGGATTCATCGACTTGTGCTGTATTGTCTTCCTTTTTTTTT
TAAGCTTGAAATATGGGGATTTATTCAGCAAAAGCCCCGGCAAAGTCTGCCTGGAGGCAA
GTTACAAGGAAGCTAGGTTGCATATGCATCCAACACTCCGACACCTCTCGATTGCTAGCA
TGTTTTGCACACAAGTGGGCAGGCGTGTTAGCTGCACGATTACAATGCTGAATACAAAAA
GACGAAAAGAAAGCTACGTTCTCCCCTATTTCATCCATGATCGGCACCACAAGTGAACGA
GAATTGTCGCGCAAAAACCATAGCTGGACCAGTTCCAAGCTATCTGTCTCCAAAACCACT
CTTGAAAAACCTCGCAGGCGAGCAAAGCGAACACCTTCCCGCAATGCCAAGGCTTCAGCC
ACCAACGGATCTGTCACTCCTTCGAAAGGTTTGCACCAAGCGGCGATGAAGGCCTGTTGC
GAGCGAGCAACCCCTCCACCTCCACCTCTGCTATACTGCCATCAGCGTTAATTTTTATTG
TACCTTGATCGGGTGGTCTCCATCCATGCCTAGGTAAGGTAAGCGCCTGGTTGCGAGGGA
TGTCCAGCATCGCTAGGGCATCTCTAGTCCAGATCATCGACTGGCTCGGGCTCACAGGGC
CCCTGTCATGCGTAATGTTATTGTGCGAAGTCCAAATAGACCACATAATTGACACCAATT
TGGCCCTCTCCGACTCCGAATACCGGTCGTCACATAGGATATCAATCTTCCATGTCTGGG
GATTCACATCAGGTCGAGATACTTCCAACCAATTTGGGGCAATATCCCAAAATTTCCTTG
CATGGGAGCACTCCAGTAAAGCATGTCTGAGAGTCTCATCTGGGTTAAGGCAAAGCTTAC
ATGCACTATCATTTGATATATGTCTGTGCTTGAGGACGGATTCAACAGGAAGAATTCCTC
GTAAAACCCTCCACCAAAAACTCTCACCTTTGGAAGCACCTTGAGCTCCATAATTTTGCC
CACATCTGTTGTTCTAACAATGGAGTAGTTGTTATTGTCCCCTCTTCTCGAGCTCGAAGC
TCAATTTGTGTCATCAGAGATCGGTAAGCTGTTTTAACAGAGTATAGACCGGATTCTTCG
GGAGCCCAGGCCAAAACATCCTCCCCTCCCTCCGACCTAAGGGGAATATTCAGAATTGCA
TCCGCTTCAACAGTAGGAAATACCTGCCGAACAAGATCAATATTTCATGTGCCTGTGTAA
GGATCTATCAACTCAGAAACCTGTCGTAGCTGGTGATTGTCCGAGCGAGC