Contig Data
morexGenes
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Map Locations of contig_41711 (6522 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_41711

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57397 1 3038 bp MLOC_57397.1 Available Available LOC_Os10g25450.1, FRAME:+2, EVALUE:0.0, 13110.m02145 protein OsSub60 - Putative Subtilisin homologue, expressed





CDS Structure of MLOC_57397






Contig Sequence (6522 bp)

>contig_41711 6522 assembly3_WGSMorex_rbca.fasta
CCAAAATAAGGATAGGATCGCCTCTTGGGCGTTTACACCTGGATTGATGTCTCTCATGTT
ATGTAGGTGAGTATTTGTTTGCGCTTGGTTGTAACTACAACCAGGAGCAATTTAATGATC
CAACCACAATCTATGCGATGTTGCATGCACTTTGCTCGACTCACCACATGGAAAACCACA
ATTTTGGTTGTTGTACGACATCGCCTGCAAACGAACAACATTTTCTTTTCAGTTTCAAGT
ATGTGTACCAAGCTGCATATCTTTGTTTTTTGAAGTCCATGAAAATGCACTACCTTTTAA
GTGTACGAAGCTACATCATGTCTGATATCTAACCTGATTACCAAGCAGGTAGCCTCCATA
AGTGGTAAGTATAGCTTCATTGCCAGAGAAAAAAATTGATCAAAGAGTTTTTCTTTTCTT
TTTCTACATGTTATAACCTTTCTTTGGATCATCAATTCCAGATAAAAATTAAAATAAAGA
CAAATTGAAAGCCCCAAGGAAACAATTGGCAAAACAAATCAAAGCAGGTTACCTTGGTGA
GTTCTCTAAGTCCTTTGCTCAGCTTCCCCATCTGGATCCGTGCCGCACACAGTTTTTGTG
TTGTTTTTGCGTGTCCTAAATCTTCCCAAACTTTGTTTCAGCTACATCAGGCCACAGATC
TAGGATATTTTCTTGGCCAGGGATGGGCAGGAGGATGGCTGGCGGTAGGGTTGGGGATGG
CCAGGAGTGGTGGCTGGCAGCAGGGAATGGGCATGAGGGTGGCTGGCGACCGGGGATGGG
AAGCAGAGGGATGAAGGGTTTTTCCTCTTCGAGGTCACGTGACAATGGAAGACAGGATAT
AAAGGTAGCAGGCCCAGATGGAAAAGAAAAAGACAAACAACCCAGATAGGAAATAAAACT
TAGATAGTTGTGCTCTAGGTGCTCCTTATAATCAATGGGCTAAAGAGAAAATGGGCTGGG
ACATAAATGGGTTGGACAAGGGACAAACTGGCTGCACAGAAAAAGAAAAAGTGACATCAC
ACCCATGTCAGGTGACTAAGACCATAGAGAAAACTTAGCTAGTTGTGTTCTATACGCTTT
CATAAAAATAAGGTAACTAAAACCAGATGTAATGTGTAGAACCATAATTATTTTTCAAAA
CAGTTCGATGGGGATCCTACTTTGAAATTGAGGGAGCAACCCTGAATAGATGGTGGAAAG
GCCAATGATGAAGAAAAGGATATACTACTTGATCAACGAATTATTAGGCACTCGATAGAG
GCGTTACCACCACATTCTTATTCTCTCATCACTTACAAGAAACCAAGATAATCACACTAA
AGCCAACTAATCCTGGGAAAGATGCTGCATCACTCCCTAATCATCTCAAGTTTATCTGGA
CACAAAGAAAAAGCAGAAAACAGAGCATCTTCTTCCTCCCTGATCACTCATTCTGATTCG
CCAAAAAGCCCTCAAAACCTCTCTAAAGCCCTGCGGAAGGGCCCCAGCCCCCCAACACGC
ACAAGTGCTTTCCCAGACACCAGCCATTATCACCAGCATCTCAGTCAGCCTCAGTCTCGT
CCTCTCCTCACTCCCCGTCCCCCACCCTCCACTCCCTCCCCCAATGGAGGCGCACGCTCA
CCTGTTGCTGTGCGTCCTCGTTCTCCTTGCAGGCCACTCGCTCTCCAATGCCAGTGGCGA
CACCGACGTCTCGAGCAGCGGCGGCACGACGGCGACCTACATCGTGTTCATGGACCCGGC
GGCCATGCCGGCGGCGCACCCATCCCCGGCTCATTGGCACGCGGCGCACCTCCAGTCCCT
GTCCATCGACCCGGCGCGCCACCTGCTCTACTCCTACTCCGTCGCTGCGCACGGTTTCGC
GGCGGCGCTGCTCCCGCACCACCTGGCGCTCCTCCGCGACAGCCCGGGCGTGCTGCAGGT
CGTGCCGGACACCGTGTTCCAGCTCCACACCACGCGCACCCCGGAGTTCTTGGGACTGCT
CTCCCCGGCGTACCAGCCGGCCATCCGCAACCTGGACGCGGCCTCGCACGACGTGGTCAT
AGGGGTTCTTGACACCGGCGTCTGGCCGGAGTCGCCGAGCTTCGCGGGCGGCGACCTCCC
GCCCCCACCCGCGCATTGGAAGGGCGTGTGCGAGGCCGGCGTGGACTTCCCGGCGAGCGC
ATGCGGGAGGAAGCTCGTAGGCGCGCGGAGCTTCTCTCGGGGCTTCCGCGCCGCGAACGG
CGGCCGCGGCGGAATGGGCGTGGGGAGGCGGTCTGCGCGGGACAGGGACGGGCACGGGAC
GCACACGGCGACGACTGCCGCGGGCGCCGCGGTGGCCAACGCGAGCCTGTTCGGGTACGC
CACAGGGACGGCACGCGGAATGGCGCCCGGGGCTCGCGTGGCGGCGTACAAGGTGTGCTG
GCCGGAGGGGTGCCTCGGCTCTGACATTCTGGCTGGCATTGACTCCGCCGTGGCCGACGG
CGTGGGCGTCCTATCCCTGTCGCTCGGTGGCGGCGCGGCGCCGTACTACCGGGACACCGT
GGCAGTCGGCGCCTTCGGTGCCGCGGCGGCCGGCGTGTTCGTGGCCTGCTCAGCAGGCAA
CTCCGGCCCGTCCGGCGCCACGGTCGCGAACTCCGCGCCGTGGGTGACCACCGTCGGCGC
GGGCACGCTGGACCGCGACTTCCCTGCCTACGTCACGCTCCCATCCGGCGCGCGTCTGGC
CGGGGTGTCCCTCTACGCCCAATCCGGCCGCCCCGTCATGCTCCCTCTCGTCTACGGTGG
CAGCCGCGACAACGCGAGCAAGCTCTGTCTGTCGGGCACGCTCAACCCGGCCTCCGTGCG
CGGCAAGATTGTGCTGTGCGACCGCGGCGTGAACGCGCGCGTGGAGAAGGGCGCCGTCGT
CAAGGCCGCCGGCGGCGCCGGGATGGTGCTGGCGAACACGGCAGCGAGCGGGGAGGAGCT
CGTGGCGGACAGCCACCTCCTCCCGGCCGTGGCGGTGGGGAAGTCGACCGGTGACAAGAT
ACGGGACTACGCCCAAAGCGGTGGCCGGCCGATGGCAATGCTGAGCTTCGGCGGCACGGC
CCTCGGCATCCGGCCGTCGCCCGTCGTGGCGGCGTTCAGCTCCCGCGGGCCCAACACAGT
CGTGCCCGACATCCTGAAGCCGGACATGATAGGTCCGGGCGTGAACATCCTGGCCGGGTG
GTCCGGCGTCAAAGGGCCGACAGGGCTCGCCAAGGACAGCCGCCGGACTAGCTTCAACAT
CATCTCCGGTGAGTGCACCGTTCAGATTCAGTTTCTGCTGATACTGTCATCATGTTTGGA
ATTACCACTCAGTTTTTTTACAGCTTGCACAAATTGCCCATGAAAAAAATGCTACCCACA
ACCACAAACAGAGCCTTTGGACTTTTGTTTCAAAAAAGGCGCCATTTCATTTCAACTTTC
GCTGCTCGTTGGAAGAAACAGAAACAGCACTTGTTTTCGCTGCCTTTTGTCAGAGGTGCA
CATGTGATGCTCTACACGACGACTAGACTAGATGTGAAACCTTTCAAAGCCAACACCAGC
AAAGAAAGTTACTTTCCCTTGTTACTTTTTGGTTTGAGTGGTTTCTAGCATTGCATGCTG
GATCTTGTCTCGTGGCAAGATACGATATTCCATTGAAACAACACTGCCTTGTGTTTTGTG
AGATGTCACTGAACAATAGTCTGATTGTGATTCCTGCAGGGACATCGATGTCGTGCCCAC
ACATCAGCGGACTCGCCGCGCTGCTCAAGGCGGCGCACCCAAACTGGAGCCCTGCGGCCA
TCAAGTCGGCGCTGATGACCACCACATACACCATGGACAACACCAACTCCTCGCTCCGGG
ACGCCGCCGGGAGCTCACCGGCGACCCCGTTCGGCTTCGGCGCAGGCCATGTCGACCCAC
AGAAGGCGCTCTCCCCGGGCCTCGTGTACGACATCTCCACCAACGACTACGCCGCCTTCC
TCTGCTCCCTGGACTACAGCGCGACCCACATCCGGGTGATCACCAAGATGTCCAACGTCT
CGTGCCCGCCGAGGTCCCGCCCCGGCGACCTCAACTACCCGTCCTTCTCGGTCGTGTTCA
GGAAGAAGGCGAGGCACGCCGTGAGGTACAGGAGGGAGCTCACCAACGTCGGCCCGGCAA
TGGCCGTCTACGACGTGAAGGTGAGCGGCCCTGCGTCCGTCGGCGTCACGGTGACGCCGG
CGAAGCTCGTGTTCAAGAAGGTGGGGCAGAAGCAGAGGTACTATGTCACCTTCGAATCCA
AGGCCGCCGGCGCGGGCCGCGCCAAGCCGGACTTCGGGTGGATATCATGGGTGAGTGACG
AGCATGTCGTCCGCAGCCCGGTCGCCTACACATGGAAGATGTGAGGGCAGTTATGCTCAG
GTTCAGGAGAAGATGAAAGATAGCTAGATAGCTTGATGTAGTTTGCTGGTCGCTTTGCAA
AGAGAATCTGCGCGAAGCTCTGAAGTGCAAACCTTGAGTTCTTCCTCGGTGCCGGTCGGT
CGCTCGCCGGACTTTGTTTCCCCTTACGGTTGTTAGTTGTTACTTGCCCGGCGACAAGAT
TGTGCGCCGTTAACGTGTGAGGTTTGAGTTTCATTTTTCTTCTTTCTTTCTACGTTCTAT
GCTTGCAAGCGAGAAATAACCCTGAACTGAAGTGGCTCAGCCGTTTGATCCCAATTTGTC
ATCCTGGTGCTCCTGAATTGATGCAAAATGATGAAAAAATTGTTTGAATTTCTCCTGGGC
AACATCAACATGGTTGCTTGGAACTGTATGTTTGAACCAGCTTGTTCTTGTTTGCAGTCT
CTTTTGCTTTTTCGTCAGAACGGGCATTGCATGCAGATCCAGCATGGTGATTCAGTGGTC
TTAAATCAGATGCCAGTTGGTCCAGACACAAGTCTCAATTCTGGGATGCGATCAAGTAGA
GTGTTCCATAAATCTGGCGAGGTAGCCAAAAGTAAATCATTGCAAAAGATTCTTCTTGGA
ATTTGATGTGTGTCACTTTGAGCTCTGTTCGGCTAGCCTTTACAACAGAAAACTGAATAA
AAATGCCAAAGGCTGGGCGCCTGGGCCTGAACCGAACCTAATCTAAGGGCATCTCCAACG
CCAACGAAACGCCACGCATAATTTTGCGACGGTTTTGATCACGTTATGGGCGATCTGGCA
TGCGCGAAGGAAAGCTATTCATTTCCTGAGCACGATTTCCAGAGCCCCCGAGCTACACAT
CTGTTTAGACGGAAGTATATGCGGGAGCTAGAGGAATGCAAGCCGAAACCGGCGGCTCAA
CAAAGTCATCATGAATAGTCGGCGTTACACCGTGCACCTTTGGATCCCACCACAGGCTGG
TGTCGCGAAAGTGCGTGTGAATGGACAGGGCCGGTCTATACATTTCATAGGCCCTGGGGC
GACACAATAAAATAGGGTCCTTATAGACAGATAAAAATTTAAATTTATCGTATTTCAACA
GCAATTCAGTAATCAGTACATAGTATAGATCAANNNTCTTTGAACAGGGACAATGAAACG
CACGTCACATGTTATTTATTTGTAATAATCTAGAAAAGTACAACATAGTAGTACGTAAAC
AATATAGTTGTACAAAAGATCACTCTTCTAAGTGGCACAAAAAGACCATCATTTCATCAA
TTGATCTGCAAAACAAAAACCCATGTCAAAACTGGTAGCAAACTTAGCACTTCATGTTTA
CATTGATGTTCAGATCTACGAAACTTACATTGGTTTCTAGCCTCCCCAGACTGCGTGTTC
TTCACTCCATGTCTTCATCCGGATAAAATTTCTCTAAGGCTTCCTGCATAAGTCACAACA
AAGCAAGCTTAGCACTTCATGTTTATATTATGAAGATACGATCTTGGTGTTTTTTCTAAC
ACTTCGAGAAGCAAAGTCATCAATAATCACATCAACATTTATTTCATCCAGTTTATCTTT
CTCAATGCATAAAGTAACAAGACCATTCAATCTTTTCTGTGACATTGTTGATCTCAAATA
ATTTTTCAATAGCTTCAACTTTGAGAAACTACGTTCAGCTGATGCTACAGTGACTGGTAC
AGTAACTAAAATTCGATAAGTTATTAATATATTTGGAAAATAGCCTATGTCTCTAACATA
CTCAAAAATCTCCATAGCACGCAATGGCACATCAGAATCTGCTAAAGTCATTTGCAACAT
TCGTAATTCTGAAAAGAGCTCATCTAATTCAACATCACCTTGAGAAAACGCTTCTACAAA
TTTAGCACAACATTTGCGTAATTCAACATCATTCAACGATTTTAAATCTTTCGAGGTAAG
TAAAAAGCCAAATATACTTTGGAACACTTTAAGTTCTTCAAATCTGTTTTTTAGAGATAC
TTTTGCAACATCAACCATAACTAAGAAGTAATTAACTCCAAACGCCTTCTCAGCTAATAG
AACATCTTCAACATTATCGGGTTCATCAAATTGCTTCTTCCTAGTAACATTACGTTTTAC
TGGAAACGATGGATCCATTCCCATTTCTGATGCAAGTCCTTT