morexGenes - Barley RNA-seq Database

Contig contig_41701
Source Contig contig_41701
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41701 (9106 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_41701

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57388	2	2010 bp	MLOC_57388.1	Available	Available	LOC_Os01g49890.1, FRAME:-2, EVALUE:0.0, 13101.m05193 protein threonine synthase, chloroplast precursor, putative, expressed
MLOC_57387	1	1162 bp	None	Available	Available	None
CDS Structure of MLOC_57388

CDS Structure of MLOC_57387

Contig Sequence (9106 bp)

>contig_41701 9106 assembly3_WGSMorex_rbca.fasta
GAGGACACATCCTGGTGTTGGTTTCTGCACCAATTGATGATATGTCTAGGAGGTGAAACT
GGGAAATTTGGTCCTTATACTATCATGTGTGATAGACAGAAGGTATGCATGCATCTTCTT
GTTATTAAGTTCCGCATTAGCATTTTATGTTATAGATGCAGTTGTACAGTAGCTAAATTT
AGCATGCTATGTGATCAGGGGCTGCTAAATNCAGTAAATCAAGTTTTTCCAAACTGCCAT
CAAAGATTTTTCCTTAGACACCTCTATGCAAATTTCCAAAATGTTGGGTTTAGGGGGGAA
GATCTTAAGAAATGCATGGATAATGCAAGTTATGCTTATAACCAACACAAGTTTAACACT
GCCATGAATGATCTAAAAAATGAGAGTGAGGGAGCTTGGAAGTGCCTAAGTGGAATACCT
AAGCACACATGGGCTAGGCATGCTTTTGACACTAACTGCAAGACAGACTTGGTTGTTAAC
AACCTGTCTGAGGTGTTCAAAAATTACATCATACTCCCTCCGTTCCTAAATATGTCTTTT
AAGAAATTTCACTAGGGGTCTACATACGAAGCAAAATGAATGAATATACATTCTAAAGTA
TGTCNNNNNNCATCCGTATATAGTCCACTAGTGGAACCTCTAAANNNNNNNNNNNNTAGG
AACGGAGGGAGTAGATTTTAGGGGGAAAACCTATTAGGACTATGATTGATGGTATTAAGG
ACAAGCAGATGGTGATGTGGCATAGGAAGAGAGAGAGAGAGGAAAGGCAGCTCTATGGGA
GATTACACCACATTATGCTGAGAAGCTAGAGGTGGAAAAGGAAAGGTCCAGATTTTGCAA
ACCTATCCAAGTAGGTGTAAATTTACGGCAAGTGACAAGTGGGCAGCAAACACATGTTGT
AAACTTGGAACTTTATACATGTGGCTGCAAGAAGTGGGACCTGTCTGGCATACCATGCAA
CCATGCAATATCAGCAATTAATAAGGCAAAAATATTTCCAGAGGACTATGTGTGCAAATT
CTTCAAAAAAACCCTTCTACCTAGCTTCTTATCAGCCAATGATATATCATGTTCCTCGTG
AACATGATTGGAAAAGGACAAGTGGACCAGACATAGAGCCACCCAAATTTCATGTGAAGA
GGGGGAGAAACAAAGAGAAGAGAATAAAGGGCAGATTTGAGGTTCCAAAACCAAAGGACA
GTTCAAGAATGGCCACTATAACATGCAGCAACTGTTGGCTCCAAGGCCACAGGTACACCA
ACTGCAGTAAACAGTTGAGACCAAAGTTGCTCTGAGGAAAAACAAGCATGTGGTAAGCCC
TTTTTAATAGTACTTGTTAATTTCTTTGCATCTTTTATGTTCATGTGCTAAATCCTTTTG
TGTATGTGCTTTGCAAGGCACCTACAAGACCAAGGAGTGAAGCAAGATCACAGCCTCCAC
CTGCAAGACCTACAAGACCAAGTAGTGAAGCAATATCACAACCTCCACCTGCAAGACCAA
GTAGTGAAGCAATATCACAACCTCCACCTGCAAGACCTACAAGACCAAGTAGTGAAGCAA
GATCACAGCCTCAACCTACAAGATCTACAAGAAGGCTTTCACTGCCCCAAGATTTGCTGT
TGGAGGTTCATCATCTACTCCCGCCCCAACATATGCAGCTAGAGGTTCATCATCTGCTCC
TGCCCCAACAAACCATTCTGGCTAGATGCATTTTTTTTACTGCCAGTGGTGTTAAGTAGA
ATGATGCTACCTTTTTCCTGTGATGCTTTGAATGTCAAGCAAAAACCTTTCCATCCGAGG
GATATATGTTCCTTTTTCCTGTAATCCGAATGATGCTACCTTTTTCCTGTAATCTCTGTT
CAATCAGCTCTTCGAGGGATATATGTTGTAGTATTGTACCAGTGTTGGTTTCTATATATG
CCGTTGTACCAGTGTTGGTTTCTATATATGTTGTTGGTTAATGTGTTGTACCATTGTTGG
TTTCTATATATGTTGTTGTACGAGTGTTGGTTTCCACATATGATGTTGGTTTCTGTGTTG
TACCAGTGTTGGTTTCCACTCCCTGTTGGTTTCTATATATGTATTGTACCAGTGTTGTAA
TATTTTTCTATATGTGTTGCAATATTTTACCTTACTTTTCCTTATATCTTCTTATATAGA
AGATACTATAACACTGGAACAATACATATAAGAAGATACACTGGTATTTTTCTATATATG
TTGCAGTATTTTTTTCTATATATGCTGCAGTATTTTTAGTGATCATGAAATAGATTTGAT
GATATAAGAAGATATATAATGCAACATATAAGAAGATATATAGCAAACCACAACATAGTG
GGGTTGAACATACATCAGGTCACTTAAACATGCATAATTCAAAGATTCTTACATTAGAAC
ATGGGTACAAACCATAGCATACTAGAGTTCAACCTAAAGAACATGACTTACAACCACTGT
ATCCATACATTACACTGCATTAAAGAACCATAAGTCACAAAAGAGCACCACATCATACTT
CTTCTTCATCTTCATCTGAATCTTCATCTTCATCTAGCTCATCCATCCAAAATGGCTCTG
ATCATCTTCAACTTTTGTTCGTTCTTCTCCACTACCTTAAACTGATCAGCAATCTGGACC
TTCAGCTCATCCCTTTGTTTAATGAGATTCTCCATTCCTTTCTTCAGACCAGCAATGTGT
TGGTTGAGCACCACAATGTCATCTTTGAGTTTTTCCTCAGAATTGTTCAGTTTATCAACC
TGAACCTTCAAAATGTAGTTCTCTTCACTTAGCTCCTCCTTCTCCTTCAAATGATTAGCC
TTCTGGTTCCTAATGACCCTGCCTTGAGCTTCTACAAGGTTCATAAGCACTAAATACTTC
CCTTGAAGTTCCATTTTCTCCTCTTTCTTATCAATCTCTGTCTTCATGACAGCCACAGCA
GCACAAGAGCTCTCTGCACCATGGGCATTCACCTTATCCTGCAAATAGCTGAAATCCATG
ACCCTCTGCTCCTCGGCATTGAGCAGTTGATTCACATCTTCTACTAGTTTGTCATAGTTT
GCATCAAGATTTCTTTTCTCTTCTGTCGGTTGGTGAATTTTCAGTGAACTCTCCAAATTA
TCATCCCTCCTAGCACTCTTGTTGTCTTCCAACATTTTCCAAAGTTTCAACAATGCATTT
TGCATTGTGGTAGGCCACTCTGGGTCTACCCACCCAAGAAAACCACAATTCTGAGGTTGC
TGCAATACAAAAAACAACAATGAGCAGTACTAATGAACACTAGCTCGTGCCTAAAAATTG
AGTGCCTACAACTTGACATAAACAATGAGCACATTAGTAGTACTAAATGACCAAAAAAGT
GACCATCTTTAGTTGTACTAGACAATGATTGATGCCCATTTGTAATAAACAATGACCATC
AGAAAAAAGTAAGCATTCTACAGCCTAAACTAAGCATTCTACAGCCTAAACTAAGTATCA
CCAAAAACAGAGCATCCCCAGGACATATCCTACAGACAAAATATATCGCACAGATTCTTA
CCGGCTGAGCACACACTAAAAACCTCCTGCCTGTCTCAAATCCTTCAAATGCTACGTGAC
GCTCAGGCGACAACCGATGCTCCGAGCAAACATCCAGGGCCGAAATCTCGATGCCCATAT
AGTCTTCGTCTTCGATGCTAGCAGGGATCTAAAGAACCAACCAAAAATCAAAGACAAATT
CCCCACCAATTCAACAAACAAAAACCCTAACCCTAACTCTACAATTGACCTAGTACTGCA
TGTCGTTGGACGAAGTGCTGATGTATAGGCTGGACAGGTTGTTGCTACTTTCATCCTTAT
AAACCATGGCGCGACGGACGACGATCGACGACGAGAGGGCAGAGGCGAGGGAGTGCGAGC
AGAAGGGAGAGAAAGGAGGCGACTGGTTCGACCGACGAGGCCCGAGCCAGATACAGCGAG
CGACCGAGCCAGTTCGGTCGCGGTCGTGTACGCCTGACATGCGGGCCGGGTATGTCATAT
ACGTCATCAATACACGTTTATACGTTGTCAGCCCATTTTGAAATAATTTGGCTATGAACC
GGTACTGGCATGCAAAGTTTTTGACTATTGATACCTATCTGCCACGACGTGTCCAAATGT
GATAGTGTCCTGCAATTTTCTCGGATCAAAGAGTAGATGCACCCACACGAGGTACAACCA
TCTTCCACCCAAAAAAAACTTAAAAAGGAAATCTTCCACCAAAAGAAACTAGATAAAACA
AACATCACAAATCACTCGAGCAACTTTTTTGTTGGCAAGTCTAAAAAAACTTGGTTTTCT
TATATATTACTTCATCCATGTATAGCAAGATTTTTTTTTGAAAGACGGTCTCTTAGGGTC
TGATTCATTAATTAAGATAGAAGAGAGTTGTTCGGTTAATTAATGGAAATTCGAACGAAA
ATTGTTACAACACGCCCCCACGGGACACCAACCACACACGCCAACCCCGAGACCACGCAC
CAGACGAGCAGCCGACTCCATCACCCGAGTAACCCGTAGCCGACACCCTACAACCAAACC
CGAAGTCGCTTCTCCGGCATCCACGCCGACACCCTACAACCAAACCTGAAGCCGCCGCTC
CGGCCTCCACGCCAACCTCGAAACCGCGCACCAGGCATGCCGCCTGCCCTGCTGCCCAAA
CAACCGAAGCCGACACACACCATCTATCTTCGGAGCCGCCCGCTCCAACGTACATACAGA
AATCACACACCGACCCCGAGGCCGCGCACCAGGCTAGCCGCCAGCTTCATCACCAGAGCA
ATCGGAGTCGACGCCACCAACCATATCCAGAGCCGCCGCTCCGACATCCACGCCAACCCA
CGAGACCAATGCCGACACCCCTCCATGACGACGAGATTTGGAACCACCGCTTCAATTTCC
ACGCCGGCCCCAAGGCCACGCACCACCCGAGCCGATGGCTCTCGTAGGCCAAGACCACTC
CAAAACGCGATACCATGGCGCAGCCATCGACCGTTCCAGGAACCTGGAACAGGGGTTTTC
CCGGAGTGCGAGAGAAGAAATCTTAGGCCCTCAAACGACGACGCCTTCAAGAAGGTTTGT
GGCGCCCACGGACGTCGCCGCTGTCGGCTCCGGCCAAGGCCAGAGCAAGGCTTTCACCTC
GAACAGTCAAAAGAAGTCTTCCGCTCGACCCAACCTACGAGAGCCACCGCTTGCCTGAAC
GACCACCCACCATCAAAGCTCGAAGCCACCGACCAGAATACCTCGTACCATCGCCGGCTG
CACCACGCAGTCGTTGACCAGGCTACCCTATCTTCATCGCAGGGGCCAAAACCGACCACG
CCTGGTCAGATTCGACGCCCTGCACCACAGCCATAGCCAACCCACCGGCCATCACCAAGC
GTCTCTGGCATGACCGAGGACCGACGCACCGCCGTCACGATGCACCCGAGCTCCAGCCGT
GGCGCTGCCCACACAGCCACCACGGCCGCTTTCGCCGAAGAAGGGGTCCGGGGGCGCCAC
CCCGGCGTCCGACCACCACATGCACGCCAGTTCCGCCCCGCGGGAGCAGCAGCACAATCC
GCTGCGCAGCACGACCCTGCCGACATGCCACCCCTCCCCCTCCTCCTCGGACCACCGGAT
CTGCGCCATCCCATGCCGAAGCCAGCACGAGCCCGCCGCGCAGCCGTATAGCAAGATTTT
GTTGGCATCAGGTGCTGGAAGAACGGACCAGGCATGTATTGTTGCCAAGTCTACCTGCAC
TCCCTTATAAAACATGAGCCGGCAAATCAAACGTACATTAGAAACGGCTACCCTCTACTG
TTGACTTAGCACAACGAGGGGTTTCCACTCCAGCAGATCTTCACCTATTTCTCTTGTTTA
TAACTACTTCTTCCGTTTTTAAATAGTACTCCCTCCAATCTAAAATAAGTGTCTTAAGCT
TAGTACAACTTTGTACTAGAGCTGGTATAAAGTTGAGACAGTTATTTTGAAACAGAAGGA
GTATAAGTCTTTTAAGAGGTTTCACTAAGGAATGACTACGTACGGATGTATATAGACATN
NNNNNNNNNNNNNNNTCACTCATTTTATTTCGTATGTAGCCGTTTAGTGAAATCTTTAAA
AAGACTTACATTTAGGAACGGAGGGAGTATAATGCATGAGAATTGTTTGTCGCGTTTAAA
ACACGTAGCAGTTGAAATCTTTATCTTGATTAAAGAAAAGGACATCAAACTTCATACTCC
CGGATTTGTCTATGACTGCGTTAAGGAACAAGCAGCACGTCATGAAAGTGTCCAGATTCT
ATCTGATTAAGACAGGCAAAACTCGCGGTGGGAAGAGAGGAAACAAGGTTGCGGCTGTCA
GTACAGCTTAGAGATCCCTGATGAAGAAAGTAGGATTTGGGGCAAATGATTCCGGTGAGG
AACTGATGAGAAATTTCTATACATGTTCCAACAGGAGCAGAGTAAAAATCAATAGTGTGT
GTATAAAATCTATTCCACTCCGTATATGAGTAACTGGCCAGTAGAAGGGATACACAGATA
AAAGTTATCGAACCAAACATAGAGTGGCCTGGGCAACTCCATTCACCATCATCGATCTAG
TGTGACAGAAAGCCCACGGGGCCCTTTCATATTCACATTATCACAATCACTCAAAAGTCA
TCTGATTATTTGACCTGTCCCAGCTAAAACATAGAAAAAAAAGAGAGATCACTCATTGGC
TCCTATCATGGACAACCTAGGCACCCAGCATATATTCTACAAATGGAAAGCCTAAAGCAA
GCAGCTACAAGAGATCACCACACAATAGATAGTGCTAGGGCAATCACTTGTCGAAAAGCG
ACAGGCATAGCACACTCGAATCTCAGTTTATCTACACAGCCTGTGAATGGCTATTCAACA
CTGACACTATTATGTAGTTCTAACAGTCCACACTACCCCCTTAGATACTTAAGCTGCTAT
CCAGAAACGCATTGCTGACACTGGAACAAGACCTACTACGTCCAGACCAAGAATTCTATC
GCGACTAATGAAAAGTGACACCAATATTGCAACAACCCAACATGTGTGATACGTCTTGTT
AGGTAATCCTTACAACAGAGGTAACTTATGTCATCTGCAACCAAAAATGAATAACACACA
GCAAAACAGGAAACAGGCAAGCAAGCACAGGCTACAGCAAACAATTATTCAACCATGACA
TCATATCTTATTATTGATATTACATGATACAGATGAAGTACAAGGAAAGCTCTATCCACT
TTTGCCTATAGTTAGAAGAGCCTCAAGAACCTAGTACTGGAAAATAAAGATGATATCGCC
ATACTACGGTCACCAAAGTACAACCCGCTGTGACAATAAACAAGATGGAACTCTTGAGGT
TAATAAAAGGTAAGCTCAGATCTTACCATTGAGCTTCTTCTGGAGAACATCCATGACAGA
ACCAAAGTCAGGCTTCACACTGATGGGTGGATTGGCATACTGGCACAACATGTCCTTGAT
GTTCTTATCGTGGTAGTCGATCTTTGATTGTGTGAACTTTAGCCCGTGTGCTGTACTAAC
AACCACCGTGCGGTCGTTAGTGCCAATTATACCCTGGTCGCGCAGCTTGAACAGAGCAGC
AAGTGCAACCCCAGTGTGTGGGCAGGCGAACATCCCAGTGAGGTCAGCAAGCGCCGTCGC
ATCCATGAGTTCCTCCTCTGTAGCTTCCTCGACAATACCATCAGTTGCCTTCAGTGCAAC
AACCGCTCGGTCAATAGACACTGGATCACCAATCTGTATGGCAGATGCAAATGTAGTTCC
AGCAACAAGTGACTGGAAGTCAGTATACCCAGACTTGTAATACCGGTACAGTGGGTTTGC
GTTGGCGGCCTGTGCACATACAAGCCGTGGAACACGATCAACTAGCCCAAGAGCACGGCA
CATCTCAAACCCCTTGTAGAAAGCATAAATGTTGCCCAGATTGCCTCCTGGGATAATGAC
CCAGTCCGGTACCTGCCAATTGAACTGTTGCAATATCTCGATGGCTGCAGTCTTCTGCCC
CTCCAGCCGAAGCGAGTTGAGTGAGTTTGCGAGATATATGGGCAGCTCAGCTGTAACCTC
CCTGATTAACCGCATGCATCCGTCGAAATCCGTGTCAAGCGAGAGCACTGTGGCGCCGTT
GGCGATGGGCTGGATGAGCTGCTGCAGCGAGATGCGGTCGGCAGGGAGGAACACGATGGC
GGGGATGCCCGCGGCGGCACAGTAGGCCGAGAGCGCGGCGGAAGTGTCGCCAGTGGACGC
GCACCCGACGCCGTTGATGGGGCGCGAGAGCGGAGCCCGGCGGAGGCGATTGACCTGGCT
GACGAGCGCCGTCATGCCGAGGTCCTTGAAGGAGCCCGTGTGCGAGATGCCGCACTGCTT
GACCCAGAGATCGTTCATCCCGCCGAGGTGCTCGCGGCCGAGGCGCTCGGCCCAGAAGAG
GTTGCTGTTTCCCTCGAACAGAGAGACGATGTGGTCGGAGTCGATCTCCGGGAGCACGAA
CTCCTTCTTGGACCAGACACCGGAGCCGTAGGGCCAGGTGGTGCGGCCGACGCGGGAGTC
GAAGAGGTCGCGCCAGTAGGAGCCCGGGAAGCGCGCGAGCGCCTCCATGTCGTGGCGGAC
GTCTAGGAGGCCGCCGGAGCTGGAGCGGTAGACGACCTCGTCGAGCGAGTAGCGCTCGTT
GGGGTCGCCATCGGAGGCCGGGGGGAACGGCTCGTACCACGCCGAGAAGGTCGTGGCGGG
CCCGCGGAGGCGCGCGGCCTCCTCCCTGATGTTCTCCTCCGCGGGGCGGCGGTGCTTGGT
GGCGGTCGACGCCGAGGCGCCCTCGGCGGCGCAGCGCGTGCGGCGTGGCGCGGCGCGGAG
CGGGAGGCGGAGATGGGACCTGTCGAGGCGCTGCTTGGTGGAGGGGTGGTGGGAGTGGGG
GTGCGCGAAGAGTAGGGAGAGCGAGGAGGTGGTGACGGCGGCGGGTGTCGCCATGGCGCG
GCGAGGGAGCTTGGCCTAGGCGGCGGGGCGGAGGAGGGGGATGGGGGGAGGGGGAGAGGG
GGCAGGGGCTTAGGGCAGAGAATACGGAAGGGGTGCACGGATGACG