Contig Data
morexGenes
Links



Map Locations of contig_41692 (9058 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41692

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57369 2 2294 bp MLOC_57369.1 Available Available LOC_Os06g34690.1, FRAME:-2, EVALUE:0.0, 13106.m03583 protein T-complex protein, putative, expressed
MLOC_57370 6 1488 bp AK372284 Available Available None
MLOC_57368 1 287 bp MLOC_57368.1 Available Available None





CDS Structure of MLOC_57369






CDS Structure of MLOC_57370






CDS Structure of MLOC_57368






Contig Sequence (9058 bp)

>contig_41692 9058 assembly3_WGSMorex_rbca.fasta
GGGGACGGGACTGGATCGGCGGAATCGGGCATGGCCGTGGTGGGAGTGATCCTCGAGGAA
CGGCGCCCGGGTTTCACCGCCGACGGTTGGGGTTTGCGTCTGGGAGGCATATCGACTCGA
CTTGGGTGGGGGGTGGATGGGGAGAGAAGGGTTGGACGGGTCTTCTTCTTCTCGGAAAAA
AATATTGCCTCCCAGGTCCGGGTCTGGGGTCTCGCCGTCTCGCAGCCGCAGGTCTACATC
GCCATATATATCGGATATCCGGCGCAGATATGACGTCAAAACCGCCAAACTGCCCCCCAT
GAAGCGCCACCAAATTCAAACAGATATACTTGTGCTGGTGACCCCTTTTTTTCCTAGAAA
AAACCTGGTGTTTTTTTGCATGGAAAAAACCTGGTGGTACTTTTTTTTCTTCTTCTAAAT
GACGCTTCAACGCATCATTTCGTGCTCGGAGGCTTCATATGTTTCGCACCTTTTTCTTAT
ATAGGGGACAATATATTTCGGGCTTTGACTTTGAAGCTATCTTTATGTTCCATCTAACCA
ACAACAAAAAAAATATGTTAATTGTTTTAGTACTGCATCGAAGGTAAGCATCTAACGACA
AAACAATTGATTCGTCTTCTCCTAGACATGTTAGGAGGAAGTGGGCCACAAGATACTTTT
CTTGCCACATGCTCTGTTGACTTATGTTGCCTTGTGATGGAGTCCTCAGAGGTTCACGGG
TTAAGTATTAGAATTTCAGAATGTGAGTTAAAGGTTTTCAAGTCAGATAAGCAAAATGAA
CTCGAGCAACAGTTAAAGTGTTCCCTAAAGCCACCAAAGTTTCTATATTTGTAAAGGGGT
GTTTGGTATGGTTTAAAAGAAGATTTCTCCATTCTTCATCTCGCCAAAATCAGACAAACA
TTATGTCAAAACTATAAACTGCCAAATAAAAAAACAATCCATATGTATAAAGAAAAATTA
ACTTTGACTCATAATGTATATCTGTTTGGTATGCATTGCCATATACATCCTCTATTTTGG
CAGTTCAGAGAGAACTGCCAAAACGTCTTATATATACAAACCAAAATAAAATTGTTTTAA
CTTTTGTCAGACATCTTCAAGGTTATTGAGCAGGCGTTATTTTCGGTGCAATACAAACAA
TGGCAACGTGTTAATAGATTTGGGTTAGAATAATAAAGCAGGAGGAGTAAGAATGGCTTA
AAATAGAGGTAATGCCCCAGCAGCATCAAGAAACTCGCATCGTCTTGCTATAATTATAAA
AGAAAACTGACATCATGGCATAGCTAGTTTTGCTGTTAAATTCAAGTTCCTATATCCGTT
CACTACTACAAAGTCCAAAAACAAAAACGAACAGCAACCATCCATGCAATAGTCAGATCC
CAAAACGCCGATACAAATACACAACTGAAACCCCACATGCGCCTCATCATCCGAACATAC
GAAAATGCTACAATCCAAACTAATACTAGACGACCCTGGAGGCCTGGCCACCATCAAACA
TTCAAGAAATGCAACCAACGAACGCCATTTCACGTGTTAATAAAACATTCTGCTCCGCGG
GCGCCTTTTCCTAGCTTTGGTACATAACATCACCGGTGCAGGCTCACTCCAGCAGCACAA
AAAGCTCTACTCTGGGATCATCTGTTCAGTGTCTGCATCTTCACCAGTTTCAATCTGAGG
TTGCTTGGGAGCACCTGCGCCAGGAGCCTGCTTCTTCTTGATTCCACTGACAATGTCGTC
AATCCTTAGAAGCATGCAAGCTGACTCAATAGCTGTCTTGAACGTCTGTGCCTTCACGCT
GTAAGAATCCCAGATCTGCAGCAACAACAAAAAAGGTGTGGTGCTTAGACGTGCACGCAC
ACAATCCAAGTGAAGGGGCAGTAGAATTCATGCGGAGTAAAAATACAAAAAATATACTAC
CTTCCGCTCCTTCATGTCAACAATATCACCAGTCCTTCCATCAACGCCAACCCAAGGATT
TTCACCGTTCGCATGCTGAAGCAAAACAATGAAATTTAAGCGACAAGCAGTAGCGAAAAT
ACAAGTATCATAAATTTTGTAATATTTTAAAACTGAAAAAGAAAGAATTATACAGATCAA
GTATTCTCTGGTTTTGGGGTTGGGAAATGATGCTTAATCTTTAATTTGCGGTGAGAACGA
ATTCAAAGAGAGTTATGTGCAGTTATGTGCAGTTATGTGTTCAGGAATGCTGTTAGCTAC
GTGTATTGTTGTACATAATCCTAGCATAATCATCCATAATAGCTCAAAAAAGATGCGTGA
AGTACCGTATCAAAGCCATTGCAGTGCCAAACCAAAAGCCTTTTTTCCTTGCAACTGGCT
CAGTTTATAAAGGGTGGTTTATCCAAATATCTAAAACCTAAAACTAAGCAATTTCCGCAT
CATATGTCCAACGCTCAACAAGTGACACTTCTAGCTATATAAGAAAAGCATGTTACACAG
GATCTAACGATTCTGTATCTAAAATACTGGACTCACTTTAATCCTCAACTTTTTTTACAA
GGTCACTGGAGAGTTAAATACAAGAAAAGTTATTACCTTCCCCTGGAGCTGTGTCATCGT
CCTAATAACATTCAAACCACAATTTTGAAGCAAAGTTCTTGGGATTGCTTCAAATGCTAA
AGCAGCAGCTTCATAAGGCCACTGATAAAAAAAAGTAATCAGACACTCAAATCATAAGAC
GATAAACACAGAAAGCTATAACATGTGCAATGCTCCAAACACACACAAAAACACATTTTA
TTCAGTATGATGTGGTAGTGTGGACTTGTGTGAATGTACTAATAGGCCTCCGCCTAAATG
ACTTCATTACTCATAGTAAATGCTAGCACTGATACTTCTAAAGCAATACCTTTTCAACAC
CTTCAACTGAAGAACTCTTCTGCTTTAGTGTTGCCGATACAGTCAATTCAGAAGCACCAC
CTCCAGGTAGAAGTTTCGGATTTTTCAAAATGTTCCTTGCAACAGACATGGCATCCTGGG
AATGCAAAAAAAAAAGGGGGAAAGGTTAAGGACAGTCTTACTATGAAATAAAATATTAAA
TAGGACAAAACAAGCAGAACAATACCTGAAGGTTCCTCTCCACCTCGTTCAAGATGTCCT
TGCTTGCTCCCCTCAATAGAACAGTGCATGCTTTAGGATCTTTGCATTCAATAATGAAGG
AAAAGAATTCATCACCGATCTTCTTAACCTCAAAGAGTCCAGCTCGTGTCCCCACATCTG
ATTCTTGAAGCTCCTCTGGCCTGTTCACTATAACTGCACCACAGGCTTTAGCAATCCTGT
TGTTATCTGTCTTCCTAAGTCTACGGATTGCACTAACTCCAGCCTTGCTTAAATAATGCA
TAGCCATGTCACTGAGTCCTTTCTCAGTGATCACCAGGTCAGGCTTGAATTTCAAAATTT
GCACACAGAGGTTCTTTATGTATTCTTCCTCCATATCTAGCAAAACCTTCCTGTAATAGT
ATATTTACCGAATTATTATACACTCCTGACCGTTAACAACTCAATAGGATTAATGTAGTT
CACAATACATATGGGGAGGAAATTTTGAATCTATACATCACTTACCAATCTTCTTCACTC
ATCAACTCAGCATTTGTCTGATTTTCTCCCTTTTTGTACTCAACAGGGCAATCCAAAAGG
ATGATGCGTGGATTTACTATCTTCCTTCTCATTTTTCCAGGAGCCACGACATCTTTATTG
AACATGACCCCTTTAAGAACCTTTGAATCCTCCAACTGGCCACCAGGAATCTTCTCTACT
TTGATATATTTCTTGATATCAACTTCACGCATTCCTTGACCCAGATCTACACCTGCTGTT
GTAGTAGCATCTATAGCAAGGTCCTAAGAAAAGCACGAGAAGGTATCAAATAATCCATAA
AATTAACCATGAAGTGAATCTAGTTGGTATCCAACTTGGCAAAGGTCGATACTTACAGCA
ATTAGGTCACCAAACTGACCAGTGAATTTTGTACCAATGGAGCTCTTCACCAGCCCCAGC
ATCGCCTCACCTACATTATGTCTCAACAGAATCAGATTACAAAACAGAACACGATATATG
TAAGAGAACCTAATTTTCCGGAAGAACAGTGACGATGTTTTCAACATGCTGGCTGCAGAC
TTACGGTCATTAACATTAACAGGCATTGCAATTTTGTCAAGGACAGCTATGGCATCCTCA
AGGGCTCTGCTGTATGCTGAAACCAAGAACCAAGAAACAATAAATGGTTCAGAACTGATA
CATATATCACCAAAGGAAGAAGCTATATATATAAGCTGAGCATCAAGTAACTACCTCGGC
AAATGACAGTGGGATGGTAATTCTTTTCAATAAATGTTTCTGCAACATGGAGCATCTCAC
CAGCTAAAAAAACGAAAAGTTAGTACAAAAGATGAAGGCCCAAACCAAATAAGCCTACTA
GCCACTGAAAATATATTTTAGTCATTCTTGCTTGCTTAAACGTTGAAGTAGGACAATTTT
AGTGTACTTAGCTACAAAGAAATAATGACAGACCAGAAACAGAATTTAGCAACTGAATTT
CAACAATATTAGTGTACTTAGCTACAAAGAAGTTCATAGTAGCCATATGCTTAGGGGCTG
TTTGGTTCCTAGCCACACCTTGCCACACTTTGCCACAACTTACCTTAGGCAAGTTTGATC
AAGTTAGGTGGGTGTTTGGTTCTAGCCACACCTAAGGCAAGCATTTTTTAATGACTACTA
AACCCCACATGTCATAGACAAAAAAGTGTGGCAAAATTCCCTTAGGCAAGCCAATGTGTG
GCTAACAATTTGAGCAACTCAAGTAAGGCAAGTGTGGCAAGTGTGGCAAAAATAATGTGG
TAAGATATGGCAAAGATAGTTACAATCCAAACAGCCCCTTAGTTTGACCAGAAACAGAAT
TGACAGTTATAGTAAAGTTTATTGACCTCCGATGACATGCTTAGATGAAAATAATAAAAC
TTGGACACAAGTAAATAATGATCTTGATATTCATCAATAGTAATAGTAATTACCAAGAAA
GGAATGTGTCACAGAAAACATCATACCTAGAACAATGACAGACGTCGTCCCATCTCCCAC
TTCTTCATCCTGTGTGCGGCTTAGCTCAATCATAGACTGCATAGATTGAAAAGGGAGAGT
TTGAACATGGTTTCATCCACTTCACAATAAAAATTACAGATTGACAGCCAATTCTAACAA
CATAAGATGTAACCAAGAGAGAGAAAAGAAACATTCCACACACCTTAGCAGCAGGATGTG
CAATGTCTAGTTCCCGCAATATAGCATTGCCATCGTTAGTAACCACAATACCTGCAAAAT
AAGAATAACTCAGATGCAATAACCTTGAAAAAACAAATTATGTAATGCAAACATAAATGT
AAAACTAACTCCAAATGGCGTAATCAGGCTATGATTTAGCTCCAATAACAATTCTCAGTA
TTACGCAAAACGCAAGCAATTACTCAGGGCAATTTAAGATGTGAAGTTATAAGCAAAGGA
AAGTACAAGATGCAAGCATTTTGACACAAATAAGCCAAAAGCCCACGTAAAAATCCTAGT
GGAGAGCAAAAGCTTGATCTGGTTATCGATGAAGCAAAACCAGTTCACAAGCATCTACCC
TCGACACATTTGTCTATGGGCATGTGTAAAGCACCCTTTCGCCCATATTCTGCGAAACAT
CATCCCCTATTACATCAACTGGCATGGTTTCATAAACCATGGAGCAATGTACTGTCCCAA
GTGCATTAATGATAGTTGTGCAATTAAGTTGAATAGAAAATACAATGAGTTCAAGCTGTT
GATAAATTTAATCTCCAAAGCAAATTAAGATGGTCAAATTTTTGAAACCATTTAACAGCG
AAGCCTGCTAAAACAAGTGGAATGATGCAAACATCATCCAACATGAAACAGAATGAACTA
CTTCCAACACAATTCTTCAAAAGAAATGATTGCTATCATAGTGTAGTTTAATAATAAATA
CTACTGATGGACGATAAAAGCATAACATCGGCTGGCATATTGCAGTGCAGAGAGAGTGTG
AAGTACCTCCACTGGCATCCAGAAGCATCTTCAACATGGACCTAGGACCCAACGTTGTAC
GAATGATGTCTGACACAGCCTGTACAGAAAACCATTAGATTTACCCAACACTAGGAGGAA
ATACACGTAAATGAATTAACTAGTCCTCACAAGACACAAACTTAAAACGTGTTGATTGTT
GAGCTAAAACAGTGCCAAAGCAAAACCGACCTGCCAGACAACCAGATCGTCACTTGCAGG
TTCCTCACATTCGCACCCTCAGATTAAGCTAACAAGACACCTGACCTATGTGATGCCCAG
GGCAAGGAGATAACATAGTACTCTGGCATCTTGGCTAGGACCACTTGTGCAGATCTATTG
TGGCATCAACAGCGAAACGTGCAACCTAAAGTGAGCTGATTGACCACGATCTAGCGAGTT
GATGCTTCTCAGAGGCATCGACGACGACAACAACACCCAACTGACGTGCTAAAACACAGC
TTAAGAGCACAAACCTTGGCGGCATGGATGTTGCCATGCTGAACCTTCGCGCCGGATTCC
CTCTTCAACGAGTCCTCTGCGCAAATCGAAACAAAAACGCGCAACATTAGGGAAAAAAAG
CGCATAAGCAGAAACGACATACTCCGTAGATCAGATCAGAGCAAAAAAACAATATAACTG
AACAAGCAAAAGCAAATCGTGTATTCGTGTCGTGTGATCGGGTAAATTTCGACACCGGGA
GTTCAAGGCGCTGCCTATCTCAAAACCTAGAAGCGAAAAGACAGAGATGCTACCGGAAAA
TACGGGGGAAGGGGAGGCGCGGAAACCCTAGGAGTCGGGGAGGAGTGGGGTGGGAGAGGC
GAGGGGCGAAGGGCGCTTACTCAGCACGAGGACGGGGGCGTGCAATGCCATGGCGATCTG
GCAGGGGAGGAGACGACGGGGAGGCGGCGGCGAGGGGGAGGAGTGAGGAGAAGAGAATGG
GGAGGCGGATGCTGCTGCGCCGCGCGATCTTTCGAGCTAGAGGGTTTGCTCGGTTTGGGC
TTTCAAGTGAAACCCTCGTCGCGGCCAGCGTGCGCCTCAGGCTCGGCGTGACCTAGGGAA
CGGCCGGTGGGGCCAGTGAGTGGGCTACAAACGTACCGTGTTTTCTCGAAGGCCATGGGA
TTTTCTTTTTCATTTTGGTTTTTTTAGCAAAGGTGTAATTTCTCTATAGTATTTTTTTAG
GACAGCACTAGTACAAATGCCCGTGCGTTGCATCGCACAAAAAAAAATGCAAAACCTACT
TGTTTTGTCATTATGCGGCATTAATTTTAATAAATGTTAATTATAATGTTAAATGCTAGA
CATCTATTTTTGGACGGAAGGAGTTTCTTTTAAAGTTTTAATTTCTGTGGGATGAGTTAC
AACAGTAACAACAATGAGGGCAGTTCACCCATTTGCCTGTGACACCAATACGGCAGTGAA
CACAATAGCAAAGGAAATTATGACACTATGAGAAACCGTATTCCATAAGTGAGTATGTTA
AACTACAAGCTTTGAGGATAAGAATATACTGCTTTCTTTCCACCTCCGATGAATCATAAT
GATGCATCCTCTAAAAACCGGCAACACTCCATGAATCCGACATCAAGTTGGCCATCTAGA
AATGATGCGTCTTCAAATCTTGTGATCCATATGGGAATCGAACCATTTGAAGATCTCTCC
ATTCTCCAGGCTGGTAAATTCATGGTATGCATATGCAATATTCAACTCCTCCGTCACATG
CCTCTCCAGCCGAAACCCCTCCGGCAAGACCTTCTTTTCCTCCGCCACGGCCTTCCTATT
CCCAAAACAGCCATCGTCCATGATCCAAGTCCCTTCCTCACATTGATATTAATGTTGAAT
CGAATTCAACTTCCATAATCAAGACACAAAATTGTGGGCTGTCAGATTTAACTTCCTACA
AAAAATCAAAACCATAAACTCAAGCACATCCTGTACCATATCCTATCACGGTCTTGTATA
ATTTTTCATGTAGAACTTCAGTCAACATCACCTAAAGAGTTGGTACAACTTCTACTCCCA
AATATGGTGCTCAACCAAACAACACTTTCAGGTTTGTTTTGCGTGGCAACTCATTCTTTT
AAGTAATGCAGCATGTCTGCATCATGTATTTTTGTGCATGTCATGGTTGTAGCAAGATGA
GTGAATCTATCCATACACAATGCCAAGACGAAGAACATAAGGGGTGTGCTCTCAGAAGAT
GTGCTTACAAATTTCAGAAACATAAAAACGCACATCATATATGAAGAAGGGTTTCTTTTA
GGTCACCTTCCCATCATATTCCCGGCGACAAAGAACGTCTGGTGCATTGTATGTTGGTGT
ACCCACTGCAGACTTGGGCCTTGAATGTAGTACCGATGACTGTCACAAAATGGCAAAGGG
TACAATGATTAGCAGTAAACATTAAATAATTATTCTTATGCAGACTTGCAGAAACATGAC
AGGATTTACAGTGCATGTGCCCACACTCCTATCAGATTTGTTGTTAACAAAAATTGTTCA
GGAAAAAGAAACTATAATGAGATTCGACAACCAACCTTGGAGTACCCAAAATCGCGGCTG
GAAGAAATTCAACTTGATGTGTCACATACAATATTGTTTTGTTTTCAAGCATCCCCATGA
AGCAATCCTGTAGAATAATATAGTAGTTCATTCTATTAGCATTTGTCCAGAGTGATGTCT
CTAAATCGTTGAACAATAAGGAAAACTGGTGATATTTATCCTGTTTGAATCATATGCGAC
TAAATTTTGGAAAATAAATTATCAAGTTAACTGCATACAAACATAGATAAAGTTGCCCTC
CAGTATGAGCATCTACTGCACTGAAAAAAAAATTATCAAGTTAACGGCATACAAACATTT
TATGGGTTTACGGAGAATAAACAAACCTTGAAAAATTGGGCTCCAGTGTGAGCATCTACT
GCACTGAAGGGATCATCAAAGAGGTATATATATGCATCCTCGTACACTGACCTTGCAA