morexGenes - Barley RNA-seq Database

Contig contig_41686
Source Contig contig_41686
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41686 (6657 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_41686

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57363	1	1900 bp	MLOC_57363.1	Available	Available	LOC_Os03g21790.1, FRAME:+1, EVALUE:0.0, 13103.m02617 protein cupin domain containing protein, expressed
CDS Structure of MLOC_57363

Contig Sequence (6657 bp)

>contig_41686 6657 assembly3_WGSMorex_rbca.fasta
CCAACGCAAGCTCAAATTTCTGTCGCCGTAGCACACACCACCGTTGCATCGCCCCTTCGG
GCCGTTGTGCCGCGGCACGCGGTCCATGCCACCACTCCGGGGTCTTCCCGCTGTCGTCCT
GACCCGCACGCTACCGCTTTGTCACCTCTTCGGGTTGTATCGCCGCGTCACGCGGTCCAC
TCCACCGTCTCCGCACGTCGACTTCATATGGTATGCGTCGTGCCATCTTTCTCAGCGCGG
GAATGCCATAATCCGCGCCGGTCTTCGTCACGTTGTCGGGTTCTTCCTTGCCTACTTCAA
GCATCGCCGCCACACTCGTAACCAGGCGCCGCCGCCCCTCTTCTTCGGAGCTACGCCTCC
CGTCCACCCCTTTCATCTTCGTCCAACACCAGCTCATCGTCAGCGTCACCGTTGTCTTCC
CCAACCACTTCGTCTACTCCGACCACCGCAGGCAATATCGGCCCCTGCCGATTTGCGCCG
CAAACATCGCCGAGTCCTTTTCTGCTAGCCTCCTCGACATGGCGTACAAGTTGTGTACAG
GTCCCCGTCTACGCATGTCCGGGGTTGGAAACACCGACGTGTGCCTTCGTCCCCGATGTG
CTCCTAGGCCTGGCAAGCCTGGAGTGACGCATCGGCAACATCGAGTTCGTCCTTCTACGG
ATGCCCGATGGTGGCAACACCGATGCGTGCTTTCATCCACGATGCGGCCTCGGGCTTGGC
AAACCTGGCACGACGCGTCTTAACTATGTATCCTTCCCAACGAACCACTAGTTCGACACC
ACTGCATCCATGACTAACTCGACACCTCCTTGCGCCAGCGGCGAATTCCTCGACACCGGC
CACCTCGACTCCACATCGACCACGACGTTCTTCGCACGGCTACCTCGACCACGGCTATAC
CATCCTACGCTCTCGCCTACCTCGATGTCAGCACAAAGGGCTACCACCTTGCTTGAGCAA
CCTCATCGGTTTTCACTCCGGCCACAACTTCCGCGATGCATCAATCGTTACGACCTTGGG
AGGATGACCGTCGACTTACCGACTTACCTTTGGATTCTTCTCCAATCTCATCGTCTGCGT
CGCGTCGCTACCATTGTTACTACGGAAGGATGTTGAGTATATTGATTATTTACAAATATG
AGATAGACTAGGATTTATCCTACCTTGTTTTGTACTTCAAGTTAATCGTTATACTTTTAT
ATACACGCCCATGAGACTCAAACAATACAACATCTATTCCATCAATCTCTTTCTTCCATA
TAACACAATCTACACATTTTTACGCATTTTTGCAATTAAATAAAATCTAAGACGGTTTTT
GGAGAGAGAAAAAATTATGATGTATACGACCACCAAGTTTGAGGACTATATTGAAATAAA
TTTTAGGACCATCGTGAACATCAACAACAAGTTTAAGGACGATACAAGAAAGTAAACGCT
TGGTTAGAGGGACAGCAACGCTAGATCACGAGACATAGATCAGCAGACTGGTATCCCTCA
GCCATCAATGTTAAAGTCGTGATGTTTGTATTATTTCTGAATTTATTTTATGATTTTTAA
CAATATGCTTTCAATGAAAAAGCTTTTAATAAAAAAACTGATGACTTGATAAATCTCAGG
ATGATATACCGGCCGTCATAATGATGAATAATGAATATATGCGCGTGTATATGAAAAAAA
TTACCACAACTGTGGAAACTATATGTGTCTAGCCCACAGCTGAATTTGACATGCATCTTT
ATTTATTAACGACGCCGGAACTCACACGAACAAACACGTAGAACACACAACACACGCGCT
AGCGACCGAAACACACGGGCGCAAACAAACACGCACATGATGTACACAAGTTCCGACCAG
AAGAACACATGTGTATGATCGATCATCCGCCCAATAAACCATTAAGCAGACGACTTGGCC
GCATGAGCTTACTCCCTCGACACTTGATTCATAACAAACGGTTCCCTCTCTTTCTCCTTC
TCCTTGTCCGGCAACGATGGCTCTATCACCGCCACCTTCTGGGCCTCCACCACCTCCCTC
AATTCCTTCAAAGGGACGCCCAACCCGGCCGCGAGCTCCGGCCCGAGAATCACGCGGAGG
ACAGAGGTGGGGCCGACCAGGAACTGAGGCTTGTTCCGCAGCGCCGACGTGGTGAACCCG
AAGAACACGAACGGCCCACCCCGCGACGCTACCTGGACGAACGGGAAGTAGCGTGGGATC
CGGAACACGTCGCCGGCACGCACCTGCGCGCTCATCGCAAGGGACCCGTTGGGGAAGACC
ACCTGGATGATGCCTTCCCCGCCGAGCACCACGCCGTACTCCGCCGCCCTCGGGTTCACG
TGTGGCGCCATCATCGAGCCCTGCATATTCCATGGCACACGCAGCGTTGATCAGCTTTTC
TGCAGTGGTTTGAAATCTTCCATTATATACCACATTGATTGATGGTTCAGAAGAGCAAAA
CGTACGGCGGTGAGGTTGACGAGATAGACGCCGATGTCTGAGCGGTCCAAGGGCTCGTAG
TCGTGCTTGTCGACGGAGATACTCCAACCGTAGGTGTTCCGGAAGCTGGGCTCATGGTCG
AACAGGTTGTAGGGCTCCGGCGCGCGCACAGTCTTGTCCGACTTCTTGTTCGGCTGCGCT
GGGGCGGCGGCACTGGATGAGGCCCCTCCGATGAACCTGCCCATCAGCTTCCTCCACGAC
CAAGTCCAAGTGGATTGCCCGCTACCGTCTTCCTCGTCGCCGCCCTTCCCCACTGGTCTC
CATGGCTCGCTCCCCCTTCCATTTTCACCCACATCACGCTTGTCTCCCTGTCCATGTTCT
TTGCCACCGCTCTCCGTTGTGTAGGACACGAAAGGGCCCCGAGGTTTCACGGGTAATATT
CTTTCCAATTCGTCGTAAGTTGTCTGAACACAAGACATGAGAATCAAATTAATCCGGGTG
CCATGCGTGTGAATTCGCCACTTAAATGTGAAACGTTGAGACGGATTAGCTAGCTCACGT
TGAGAGCGGTGACAAGAATCTTTGGCTCGAAGCCGGCCAGCACTGACGTCTGTCTTCCTC
CCCCACCAAGATAGAAGGACTGCATCGTTCATCAATTCGTCGATTGTAATTCAGTAGTCA
GGTCGAGATGTTAATAGTCAATATCCACAAAATCTCACTAATTAATTAAATGCTTGCAGA
TGCAGAACAAACAGGGCATACATATGACCTGATAAGGGACGAACCCTGCGCCATCCGAGG
CGTCGATACTGCATATGATGTGCAGCCTCTGGCCTTTGCCGGTGTTCACCATGTAGAAGG
TGGTTCCGGCGTCGATTTGGAGGACGTCGCCCATCTTGAGCTGCTTCTCCACCAGACCGC
CCTTGTGGATCCATCCAACCTTCACATCCCCTGCACAGACAAAAATGGATGTGGATTGAT
TTTCGTGAAAAAGAATACGGTGGCAACCACAAAGGAATTGTAGATCAATGGCAATTCACA
TGGCAACACAACAATATAATATAACAGTTTCACACTTCGAATTATTTTAGCATCTTAAAA
CAACAACTTTTTTGTGACATCTTGACAGCAAGAAAATGACATCTAAACATGGATTTTTAC
GGCGACAAAAAGTACCCGGTGTGCAGTGGATGGAACAGTAATTCGGTATGAACCTCGCTG
CACGAAGAGGACGATGTTGGAGTCTATGTACTGCGGCACGAACAGCGTCTTGGGCTCCAT
GGTTATGAAGCCGATGTGCATGAGCCCCTCTCGGCAAGCTCCGCACCCCGCTGACCACCC
GCCGTGGCCGTGCTGCCACGGTAACTCCGGCACGCCGGAACCTGGCACCCCCCGCACGAC
GTGCACGCTCCCACCTTCCGACTCCACCAGCTTCTCCACCTTGTCCAGCAAGAACAGCCC
TTTCCCCGTTCCGCCACCTCCGCCGCAGCCCTTGGCCTCTTCCTCCGGCTGCCACTCCCC
CTCCCCCTCCTCCCACCTCTCGCGTAAACGCGGTGCCCCCATCGCCGACCACCCCGAGAG
GAGTAGAAGCAGCACGAGAGCCGGCGCCATCGCAGCAACCCCGCGACCCATCATCCGCTA
TCTTGCACGATTTCTGTAGCGTCTTCTTCTTGCACGCTGGGTTGCAGTATGCTTTCTCGA
GGCGAGCCGTACTGGGTGTGACTGACACTGTGAGACGGTGGCGAGGTGCTGTTAAAGGGG
CGATCGACGGGTGGAGGGGGAGTAAGTTGCACGTGTCGTCGTGCGTGGGGCGCCTCATGT
GCTCCACGTAGCGCGCCGTGGATGAGGGCGCAGTTCGGTTGATGCAGGTGGCCGCCCCGT
TGCTCTCCAAGTGTACTTGGCAGGAAGACTCATCTTGCCTCGACGAAAGATCGAGTGTTC
GAGTGCGCGCATGTACGCTCGCCACCGTAGACCGTTCAAACATGCTTGGTTGGGAACAAA
AAACGTGGTTGGTTGCATATACTCCCTCAGTTTTTTTAGTCTGTATATAGGGTTTGTTTG
GAACTACTTCATTAAAAAAATCAGCTTCACTGCACCAACTTTACTTTAGATCAGTTTCAC
CGAGGAGTTGTAGCTCCACCTTGAAGCAGTTTTATACTGTTTGGCTTTCAGCTAGCTCCA
ACTTTAAAAACAGAAGTATTTGATGTGAATAGTCTATTCTGTCCCTATTTTTTATGCATG
ATGTTTTGACGGCCCAACATTTATGCGCTTTGAGAAAAAAATTTTAAAAGTCTTGTAATT
CAAAACATACAATATTTGAAGTGAACTCATGTACTCATGGTTTGAGTGTTGTACGCACGA
ACATGTTGTTCAATTAAAAATATATGTAAAATGATGTGAACGATTATGATACATAATTAA
AAACATCCACATGAATGTCCAACGATACATTGTTCTACTCGCTCGAAATAAAACCCGAAC
CATCTTTAACCGTAGAAATCTAGTTCCAACCATCGGCAATAGCGGTGGCTAACTCATCAC
GGAATTTATCCACGATCGGAGCATCCGGTTCCGTTCTAGATCTATCAGAGGCAACAACAA
ATTTGTTATACCTGCTCTTCCTTAGGGGTTGTACGTTGCTTCATGTTGTTCATGCTGGTC
TGACTGCTATTCGTGCAGGTGGTGTGCACGACATCCATGCCGGCAGCTACCTCCTGGCTT
GTAGCAGCAGGTGCGGAATGGGTCCTCCCAGAAGAGGCGAACGCCACACCGGCCATCCCT
GCTGTCGTCGAGGACTGGCCGGGCCAGGAAAGGCCGACCCTGATCACCGGGGCCATGGTT
GTCCTCGACATTACGGGACCTTGATGCTGGAGATGGGCGGAGGAATTGGGGGAAGGCGGA
GGAGGACCATCAGATCGACTCATTCCGATGGTCTCCTCGCCGCAGTCGTGCTCCGGCCGA
CCGATGCAGGTCACGGCGGCGGCGGCAGGCACGTTCCTCCTCGTTCTATGTCCTCCAGTC
AACGAGAAAGAAACAGATCGATCTGCTAGTCCTTGGCTGAAAAAAAAGAATGAAAGGGTA
TGACTTATGGGTGGCAATGGTGGGTAATTATCTCACAACTTCACGTCTAGTTATCAAACT
TGAATTTTCGGAGTACCCCTTGAGGAGCTTCACAGAAAACACGAAGCTAGACCTCGGATT
CGAGTTTTTTAGTGAAGCTGGACATCGTGGAGCTGCCCCGTTTGGCTTACGATTTTGAGA
GTAGAGCTGATTTTTCTGAAGCGAAGCAGTCCCAAACAGGCCCATAAGGTTTGGTCAAAG
TCAAGCTTTGTAAAGTTTGACTGATTTTATATTAAAAAATATCAACATTNNNAACATGAA
ATCAATATTATCAGATGCACCACGGGATGTATTTTCATACCATATAATTTTAATATAGTA
GATATTCATATTTTTTGATATAAATTTGGTCAAATTTTATGTTGTTTGACTTTGACCAAA
TTTTATACGCGGAGTAAAAAAGAAATGGAGGGAGTACAAGGGAGACCATTTTTTTGGTTT
TAACCTAAAAGGTTAAAAAAATACAAATCTGACCTCCGATTCAAAAAAATTGTAATCTAA
CCTCTTTACATGACGCCAACATCGTGGCGTCCGAGTTGCACGGGAGACGCCAGGGATCAT
GACGTTTGGCTCAGACCCGCTCGATCCCCCCGTCTCGTTGACCAGCTGTTGCAGCAAAGG
GCCAGATGCCAGGGACCCTCGGGCGTGGTCGCCAGACCCCAGACACCGCGCACCCTCGCA
TCTGGCACTGTTGAGTTACACGGGCCCGCCCACCCGGGCGTCTTCTTCCTCCTCCTCACC
GCATCTGGATCTCTCCCGCCCCTCTTCCGCCTCATAGCCCCCCCCCCATCTACTGCCTCC
TCCATCAAAGTGTGTGGTTCTAAGCCCCCGAGCGTCCTTGAGGTAATCTCCCTCAATCCC
TTCAATTTTTTTAACATTTTATTTTGGGAGTATTTCTGAAGAATGGATGCTAGATTCGTA
GATTATTTTGTTAGTTTTAGGGATTTTTGTGTAGTTGCAAGATTATATAGATGGTTTGTT
CAATATGTTGGTATATTTTTTTGGCCTTTGGGGCATTTTGTTGAATATGTTAGTATATGA
TGTGTTGTAGATTTTGTTTAATAATTTAGTGTTGATATGATGTGGGCATAATGGATT