morexGenes - Barley RNA-seq Database

Contig contig_41680
Source Contig contig_41680
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41680 (7382 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_41680

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57360	3	2001 bp	MLOC_57360.1	Available	Available	LOC_Os02g15810.1, FRAME:-1, EVALUE:3e-151, 13102.m01762 protein HMG1/2, putative, expressed
CDS Structure of MLOC_57360

Contig Sequence (7382 bp)

>contig_41680 7382 assembly3_WGSMorex_rbca.fasta
TTCCCGCTTAGCGATCTACAAGGGTATGTAGATCAGATTTCCCTCTCGTAGATGATCATC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGCAACGTTCCCCAAC
ACCCCTTACATAAGATCTTGGAACTAGCAACATGGACAGGGCTCCTTCATAGAATACATG
GTCGGGGAGCTGCGGTGCGTACCTCCCTCTATGCGGACGATGCGGCGGTCTTTGTTTCCC
CCATCAAACGTGACATTGACAACCTGGCGGCCATCCTCAGGGTCTTTTGGGAGGTCACAT
GCCTCTGCTCTAACTTCCAAAAAGGTCAGTTGTGCCCATACATTAGAACTACATTGACCT
CCAGCTGGTTCTTCAGAGCATGCCTGCTACTCGTGCTTGCTTTTCGATCAAATACCTCGG
TCTGCCACTATCAGTACGACAGCTAAAAAAGGTGGACCTTCAATACCTTGAGGACAAGGC
GGACGGAAAATTAACTCCTTGGGAGGGGCAGAGCATCACTACCATCGGATGGACGACGCT
TGTCTGATCGGTCATCTCCTCACAAGCGGTGTTCTCCACCACTCCCTTGTTGTGCCTCAG
AGTTCACTATACAACCTGAATAAAATTGAGAGAGCTTTCCTCTGGCCCGGTTCGGACAAA
ACAACGGGTGCTAAGTGCAAGGTCGATTGGAAAGTGGTTTGTCGACCAAAGGAATATGAT
GGTCTCGGGGTACTCAATACAGAAATGTTTGCACGTGCCCTCAAACTTCGGTGGCTATGG
TACAAATGGAACGAGCCGCGTAGGCTATGGGTTGGACTTGGAAACCCGTGCACAACTACT
ATCAGCATGTGGGATGGCGCCAAAACGCCTTTCTGGGATTTCCCTTGGCTTCTCGGGCGC
AAGCCCAGGGACATTGCACCGCTCATCTTTGGGGCTTTCAAACAGAAAAAATGCAAGGTT
CGTGAGGCTCTGGCAGGGAACGCGTGGATTTTCAAAATAAAGCACAACACGGTTGTTTCC
ATCGATCACATTCGAGATGTTTTCATGCTCTGGACACTCCTCAATGATGTCCACCTCCAC
GAGCAGGCTAAATGATGGAATCTACACGACGACCACTACTTACCGGGCCCAATTCCTTGG
GATGACCCTCTCCCCTTTGGATCGCATGGTGTGGAAAGCATGGGCACCTCCAAATGTGAA
ATTCTTTGCATGGCTCACGTTGCAAGATTGAATTTGGACCGTTGATCATCTGGAGCGCCG
TGGGTGGCCAAACTGTGGCATGTGCAAGCAGGGGCAGAGCCAGAATAACACTAGGCCACG
AGCCTACTTCATTGCTACAGTAAACTGCAGTGTGAAATAGTGTAAAAAAATCTACAGTCA
ACAAATGTTTTTTTATGCCATGACCCGGGCCTGGGCCCCTCAGGCCTGGGTTTTAGCTCA
GCCACTGTGTGCAAGCTTTGCAATAGGGAGGAGGAGACTGGCACCCACCTATTCTTCAAG
TGCCGATACACGGTCAGGCTTTGGAAGTCTATCATTGAAAAGCTGGGGCTCACTCACATG
GACACCTCCGTTTGGCTTATGGACGAATCAGTCTCTGAGTTGTGGGATAGGAGAACAGAC
AATCGCAACCCCAACCGGTAGACCATGGCCTCCCTCACCATGCTTGTTTCCTCAACCATT
TGGAACGAAAGGAATGCGAGGGTGTTCCGTCAGAAGAGTTTGCCACCGACTACCCTGCTA
TCCTGAGTGATTGAGGAGGCCCAGCTGTGGTTAGCCGTTGGTACGAAAAATCTAGGTAAA
ATTCTATCGGGCGAGTAATTGTCAAGTCGAACGTGTGCATTTGTGTAAAACGCTAAACTC
TATTCCCCCCATTATTTAATTGATGAGGTAAATCTTATGCCTCCATTTATAAGAAAAAGG
ATTTAGTTTTATTGGCAAAGCTAATTCAAAGTAACTGTTTGTTTCATCTTTACTGACAAG
CTGAATCTGGTCTCTGATGCTCAAACAAATGAGAATACGGTGTGTTACACCTTTCATTTT
CTTTTCCCAAAGAAACAGTTCGACCTAGGGGCACCCCTGCAAAAAAAATGATACGGATGT
TTGATGGTAAAGGAAAGAGTTGGGAGCACGGTCGGAGCACCACGATGAAGCAGGCAAGCC
TCTTCCGCCCCAAGGTAGGCTGGTACCAAAGTAGGGGGAGCAAAAGCTCGCTGCTCACGA
GTTCAAGCTTCCTTTTGTTTTTATACCAGCGAAATTGTCTGAGATTTCTCAAGTATTTTG
AATTATGAAGCTTGCCGAAGCAACCATGCATGGCATACGACTAGAAAACAACTTCATGAC
CAGAACGCTAAATCTACCACTAAGGATTCAGAGACGGGAATCCTTGAGTTCATAGTTCAA
CCGAGAGTAACAGCTGAACCTAGGGACACCACCCTAAGCAATAGTCGAGGATGAGGAGGT
GTGAGCTTTGGTGTACTCGTCCATCTCCATCTTGTACGCGGCCATCCCTTGGGCCGCTTT
CTGGCTCCACACCTTCTTCTCCGCGGAGCTCAGGTCCTTCCACTTCACCGAGATTAGCGC
GCTAAGCGTCGAGTTGTTCACCCCGGGCCGCTCCTCCGCCAGCTGCTTCCTCGCCTCCTT
GCTGAAGAGCAGGAAGGAAGAGGCCGGCTTCTTGGGCCTGTTCGGGTCGGCGTTCTGCTG
CTTCTTCTTCTGACGCTTCTCTTTGGTTTTCTGGTTAAAAGGAAAAGCAACACATGAAGC
AAGGTTGATTCCTTCCCTAGCTTGAGGATTTCATGTGGGACTTGGGGGGTATATACCTTG
ATGATGTTGTCTGCCTTCTCCTTCTTCCTGAGAAGCTGCAGAGCCTCCTGCTTGAGGATC
TTCTTCTGCTCCTCTTCTTCCTTCTCTAAGCTCGCATTTTCCTGCAAAGTACACCCCATT
AGATACCTTCATTTCTCTTATTAGAGCACTTAATATACAGAGTAATATTGATAGCAAGTA
CTGCGCAACAAAACAATTTCCCTACCCCAAGCTTCTTCTGATTGTACACCTCCATTTGCT
TCTGGTATGCCTCCTTCTGCTTCCTCGCAGCCTCCTCGTAAGGAGCCTTCTGAGCCTCCG
TCATGCCCTTCCACTCTTCCCCTGTGATCTTACCAATCTGCGAGAGCACCGAAATCATTT
TATCAGATGAACGGACAAACTGAAACCAGACAAATACAGCTCAACAGCCGGACCATTACC
TCGGGCACAGTCTTCTTCTCGGCCACCAGAGCGCCACGCCTCTCCTGCGAGTAGAGGAAG
TAGGCCGACATGGGCTGCTTCGGCTTGGAGGGATCCTTCGCCTTCTTCATCTTGTTCTTT
GCCTTCTTGCTGTTGCCGTCTCCCTCGGCTTCCTGCCTGAACTTGAGGTACTGACCCAGC
AGCTCTTTCGCCGTCCAGCGCATCTGCTCTTCGTCGAGCAGCTTCATCGCCTCGGCCTCG
CGCTTCTCCTGGCCGACCACCTGCAGGTAGGCCTCCTTCTCCTGCCGGTACCTCTCCTCG
TACGGCTGCTTCTCCTCGTTGCTGAGGGTCTTCCATTTGGCGCCCAGCGCGTTCGTGACC
TCCTTGAAGTCTGTGTCGGGGCTCTTCTTGATCTGAAAAGACCGTGGGCATTTCATCAAA
CACCTGACAGGCAAGGAAACAGAGAGAACATTTGATGGTTGGTTCCAAGGTTTGCACCTC
CGCCCACTGGTCTTTGCACCACAGAATGTACGCCGGTGCCGGCTTCTTCCTCTCATTGCC
AGCCTTGCCTTTCCCCTTCTTCTTCTTCTTGCCTTTGTCACCTCCTTCCTCATGGTCCTT
GCCGAGAAGAGACTGGGCGAGAGGAAAGTTCTGCAGTTCAATTCAGATCAGATCAGACTA
ATTCGATCCAAACTAATCACACAGAATGCAATCTACCAGGAACAAAAACAAATCGAAGCG
GTTCGTTGCACGTTCATACCATGGTGGGCTCGAACACCTTGACGCGCTGCATCTTCTTGA
GCTCGGCCTGGAGGCGCTCCTGCTGCTTGCCCTTGGTCTCGAGCTCCTCCTCCTTCTTCC
GGATGACCTCGTCGCGCTCCCGCACCATCTCCTCCGCCTTCTCCTTCTCCAGCCGCAGCC
TCTCCAGCATCCCCTGCAGCTCCGTCAGCTCGTCGGACATCGACGGCGCCGCGTCCTTGG
CCTTGCCGCCCTTGGACGACGCCCTCTTCACCTTCCGTGTTGAGGCGGGTGCCGTGGCGA
CATCTGCCTTCCCAAGGGAGACGGCGGCCGGGTCGACCAGGGCGGGAGGCGTTCCCTTCC
TCTCGTCGGCTATCGGGGACACCTCCGCCTTGCGCATCTTGGGCGACGTTCTCTTGGCCT
TGTGCGGCTGCGGGGGGAGGGCAGCAGCGAGGTCGGCCCCTCCGGCGGAGATGTTGGCGT
CGTTGTCGGGCACCGGCGCGAGGGCCTTGCGGCTCCGGCCGCTCCTCCTGCTCTCGGTCG
CCGCCACGGTCGCCATGGGATCGGTCCGAGGAGAGAGATGTGGATGCGTGGGGTGATGGG
GATGGATTGGCTGGTGATATCCGTGTGGCTTTATAAGGGGCTTAAGGGGTTAACGGTCAC
AACATTTTGAATTTTGAATTCTGCGTTAACGGTGACGTGTGCGGCTCAGCGGTGACGGAG
AGACGCCGCTTCGAAGCTACCGTACTCCGTCGAGATAATTCCCTATTTGGTTCATTCTTA
AAGTTTGCTTCCATATTTTTTCTAAAAGAAAATATTTTCTTTATTTGACCTCCAATGTAA
AATGTATTCATTATATGACACTTCCGTCTATTTTAACCACTAACGGTGTCAAATGATATA
TGAAAAGATAATTCTACCTCTAATGTTGTACTACATGGCTAAAAAAAGATTGTTGGTTTC
TTCAGCATGACAGACTGACACACAACCTTACCAAATCATGTGACTTTACCTGCTCGCAAC
TGCATGGCATGGAGATGACAAATACTATTGTACCAATACTTCAAATATAAACACGGTATG
CGAACTTTAACACAACCAGCATACTGTTTTCTGCTGCATATTGTATGTAATAGATACGTA
CGTGCTGTCAAAATCTATTGAGTGCACGAGGTGGTGCTGCTCCTAGCTAGCTCGTTGACG
TATGCCAATGCAAGTACATATGCATCAGCGGCAGCTTGTTGGAGTTAACCACAATTAGCT
TGATTTAGTAGTTCAGTTCAGCCGGTTCAGTGGAACAAATGAACGATCTTTTTTCCAGCC
TTGTACAGCATCAGGGGTATAATGGTATTTTCACGTTGCATTTAACACGTGGTCAAACTA
GACAAAAATGTCATATAAGAAATAAATTTTACATTGGCGGTCAAATAAGGATGAAAAAGC
TTTTTTGGCCAAATAGGAAAGCAAACTTTAAGAAATGGTCAAATAAGGAATTCTTTCACT
CCATCCACCGTTGAATTCCAAATATCAGAACCATTGTCGTAAAAGATGTCAATTGCACAG
GAATCCAAACATTTATTCGATGGTTCTTACTTCTTCTCACGGAAAGCTTTCATGGCTTAC
TTTATTACATACGAAAAACAATTAGAGCAATTTCAACCGGCCGACCCGAAGGAACGGCAT
TTTTGTCGTTTTTGTTTGTTTGGGTCAGTCGCCCGCTCGGCCTTCATCTGATTTATAATT
TGGGTCGGCAATGCGTCTAATGCGTCGACCTAAATTTGGCTGCGTGGCCGGCCTGCCGTT
GTTTTTGAACAAATATGCACACATTTTTTCATAGTTTCAACCGAACCAAAATAGGAAGCA
TGGTTTCACAACCAAATAAATTTAGATAGTTTTACAAGCCGAATAAAAATCAAATTTGTC
TCAAATACATGTGAAAAAAATACATCTATTGGTTGTCAACATGAGCCCACATATGCTCAA
CTAAATTATTTTGTAGTTGTATGTGAGTTTTCCAATCACGCATTTCATGATGAAATTGGA
TGAACTGTTCAAATGTTGCCGCTTCTTCATGTTGAGGCATAACATTGTCATCGTGAAATT
GAAATCACTGATCGTAGAGACGTTCCGGACGCTCATCTTTTACGATCATATTTTGCATGA
TCACACAAGTAATCAACATCTCCCATAATTTCTTCATGCTCCAAGTCCTAGCAGGATACC
GAACGATGCTTCATAGAGATTTCAAAACACCAAAGACACGATCTGCGTCTTTCCTAGCAC
TCTCTTGTTCTTGGGTAAATTTTTTCCTCTTTTCTCACACAGGGTTGTGGATTGTCTTCA
CAATAGTGGTCCATTGGGGACAGATACCGTCACCTAAATAGTATCCTTTGCCGTAGTTGT
GGCCGTTGATGGTAACATTCACTGGCTGGTTGTTTCATTCAGCAAGCCTTGCAAGCACAA
ACGACAGTTGAAACACGTTGATATCATTGTGTGATCCTGCCATGTCGAAGAAAGAGTGCC
AGATCCAGAGATCTTGAGAGGCCACGACCTCAAGTATGAAAGTGCAAACCCTAACATGAC
CCTTATACTACCCTTGCCAAGCATAAGGACAGTTCTTCCACTCCCAGTTCATGCAGTCTA
TGCTGCCAAGCAACCCTGGGAAGCCCGTGCTAGCATTCGCCGCCAACAAGCACGCTATAT
CTTGAGCATTAGGCTCCGTCAAGCACTCAGGGACAAACGCTGCAATTACAGGCTTGCAGA
ACCTCTATAGTGACTCTAGACACGTAGTCTCGCTCATACGGACGTATTCATCAATAAGAT
CATTGGGCACTCCGTATGCAAGCATCCGGATAGCTGCAGTGCATTTCTGATAAGATGGGA
AGCCAATCTTTCCAAGGGAATCATCTTTGCACTCGAAATAATCATCGTATCCGACACCCC
TTCTCGAATACAGTTAAAAACATGCCTAGCCATAGGAAAACATTGTCGGAATATGTTATG
TTTAATTAGTGAGTTGGCTGCGTCGAAGTAGTCCTTCTAAAGGAAGAAATTACCGCTCTC
TCGATTTCGATTCAACACCGGAATATGCCACAGGATGGAGCCACGAAACAACCGGTGCTG
GCTATTGAGGTGGTGATGGACCAACGCGACAACCAAGATCACCTCCGCATCTTCACACGA
GGAATCGTCGGAGTCACAAAGGATATTATGAAAAAAGAAATCGTCGAACTCGTCGTCGGA
GTTCATTTTGTACCTTGGCAAATTGTCGAACAGCTTGCAGGCGTCGACGAATGAGCCAGC
CAGCGAAGGGAGGCACGCCACCCCTTGGGCCAGGTGGCTGGCGTGGAGGCGTCCGACCAG
CTTGCCAGCGTCAGGATGAAGGAGCTCGCGGGAGCGGCGAGGCGGCTCCCTGCTCGCGGT
GG