morexGenes - Barley RNA-seq Database

Contig contig_41663
Source Contig contig_41663
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41663 (7120 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_41663

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57344	1	834 bp	MLOC_57344.1	Available	Available	LOC_Os05g49030.1, FRAME:+3, EVALUE:5e-124, 13105.m05238 protein 60S ribosomal protein L18a, putative, expressed
CDS Structure of MLOC_57344

Contig Sequence (7120 bp)

>contig_41663 7120 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCGCGTACAGGCGTCGCCGCACGCCCTCGTACCCTTCGCTGGCGCTGCTGTAA
AACCATCATCGCCTGTGCTCGGGCCGAGCCACGGGGGAGATGACATGGCTGCCTCCTGCC
ATGGACGGATCTGTGCGTATGCATCTGTTAAAGAAAATGCTATAAGCGGTGTGCAAAAAG
CTTCAAACGGCATAAAAAAGCTTCAACCGACATGAATAAAAAGCTTTAAGCATTGAGGAA
ATTTTGCTACAAGCGTTGGCATGGCGAGCTGCAACCATGATGAAAAAAATGCTATAACAT
TATACAAATTTGCTACATCCATAATTCTTTCAAACCATTTTGTTCTTTGCTACAAGCATT
GGCATAGCGAGCTGCAACCATGATTGGAAAATGCTACAATCATTATACAAATTTGCTACA
TTCTTCATTTGATTTTGTTGCAACCGATGATATAAAAAGCTTCAATCGGCGACAGCGAAA
CACAAAAAGTTGCAATCGTTGACACAAAAGCTTCAACCATATGTTTGAAAAGTTTTAACC
ACATACCAACGAGAAAAGCCTGTCATTTTTGCTACAACCAGCAAAAAGCTTCAAACGACA
TGGAAAAAGCTTCAAGCGACACGGGAAAAGTTTCAATGAAAGTGAAAAAGCTTCAAACCG
GCGGTGTCGACGGCGAAGAGCGGCGACGACGACAAGCGGCGGGCGATGGGGGGAGGGCAT
GAGGGTGATGTGACGAGCTCCAGCGAGCGGCTCTGACGAGTGCACCGACGAGCAGCTCCG
ACGAGTGGCTCTGACGAGCATGCTGGTGAGCGCGCCGACGAGCGGCTCCGGCGAGCACGG
GGTGTGTTGTGCTGCTTCGAGCTCAATTGCCTCACAGGAGATTACGGCTCGGGTCAATGA
CGTTCGTGACGGTGCAATTTTCCAGAGGAAGACGATGCAAGAGATTGATGAGGAGACAAA
TATATCTCATGGCTAGCAGCTGTTGCATCGTAGGGTTGCACGTTGACCGGCGGGGGCGCT
CGCTGCCGGTGGGCCGGCGCAGAATGGTGCCATTTTCTTTAGTGTATTTTACGATAGCTG
TTCTCTTTATTGTTAACTAGCAAAAATGCCCTAGCGTTGCAACGGAAGAAAAAATAACAC
ACGCTTTGAACGTAATATATTTTCACATGGCATCACATTTGTGTTCTCGACGATGGTCTC
AGTGATCACACAACGAAAACGCGTTCGAATGTACAATCACTCGGAATAAGATGAGAAATA
TGTTGTTTCTTCCCACGAGATTTTCCAATGGTGTGCATGTGTGGTTAACAATGTTTTTCT
TTCCTTTCAATTTGGCCGGCCCAGTCCAGAGATTTTTCTGTTTGAAACGTTTTTTATGAC
TTATAGGTGGCATTGGTGGNNNNNNTTAGTCAACTTTAAGGGCAATTTGGATGACGTACG
GAAAAAGCACAATTGTTTTATTAATAGGTAAAGATAAAGATAAAGATAAAGATTAGGGGA
GATAATACGTTGGGCCAATGGAAGGGTATAAAGAGCGCAACAGTAGGCCCACGACACCAG
CAAAGCCCATTAGGGTTTACAGCCAAGCTCGCCACCTATAAACGCTTCTCTCCCTCACAC
GGACGCCTCCTTCGCCCGCCGCCTCCTGCCCTCATCTCCTTAGGTTAGGTTAGGCTAGGG
GCTTCGCAGAGCACGCGGAAATGGTGGCCTTCCGGGTAAGTTCAGCCCCCCGGCCGTTGC
TATCCTCGACGCCTCCGTGTCCGCGCTTGATCCGTGTTCTTGATTCGTCTCCATTCGTCC
GTGCTCGTGCAGTTCCATCAGTACCAGGTGGTGGGTCGCGCGCTGCCGACGCCCGGCGAT
GAGCAGCCGAAGATCTACCGCATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGC
AAGTTCTGGTGAGATCCTCCCAGTCTCCTCGCGATATCTCAAGGATCTGTTCGTCTTCGG
TTCGGTATTCCTGATGGCTGTTGCCGCGTATGTGCAGGTATTTCCTGAGGAAGCTGAAGA
AGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGGTATCGTGCCTCTTCTCGT
CTTATGTTCTGCCATGAGCATGGATTATCTTGAAGCTTCTGTTTGTTTACTGTACATTGC
AATTACCAACCCAAAGCGGCTAATTAGTTACTTTTACCGATCCACTCTTACCACTGCATC
GATAGTTTCATTTGTACTCTCTGTGCGTTATTAGTCGGAAGGCAACATAAAATCATTCGA
GTTGTGATTTTATATCCTGGAAGTCTTTCTTTCCATCAGCACTTTATGTAATGCCACTTC
ATCTTGTTGTGATCATCGCTGAAACATGGATCTGTAGTTATATTTACATTATCTATGTGT
AAATTACTTCTGATACTTTATTCTGACGTGCCGAGGCTTCTGTTTTGGATAATCAATTTT
GTATTCATTACAAAGGATTTGTAACGCAGAAGTTCAGTGAATTCCTGTTGCCACATCTCC
TTTGATCTGAAGGGATACATTTGTGTTATCTAGATTTCCTGATTAAATGGGAACTTCCTT
ATGCTTCAAGTTCAATTTCACTGTCTGTTCTGGTTTGTGATTTTCCTTTTTTTCAATTAG
TGTGACATGTATGTCATAGTAGACTGGTATTAACCATAGTTTCTTGTTTTGTGAACCAAT
TAGAACCCCAATTTTCTCCCACTGATTCTTTTCTTGTCAATTATAGGCATGTGATTGTTA
TTTTTGCACTCAATTTTTCTTTTTTGTCAGATCTTTGAGAAGAACCCAACCACCATCAAG
AACTATGGCATTTGGCTGCGTTACCAGAGCAGGACTGGGTACCACAACATGTACAAGGAA
TACCGTGACACCACACTGAATGGTGCCGTGGAGCAGATGTACACTGAGATGGCCTCTCGC
CACCGTGTGAGATCCCCCTGCATTCAGATCATCAAGACCGCGACTGTCAACTTCAAGCTA
TGCAAGAGAGACAATACCAAGCAGTTCCACAACTCCAAGATTAAGTTCCCCCTTGTGTAC
CAGAAGGTCAGGCCACCAACCAGGAAGCTGAAGACCACCTACAAGGCAACCAGGCCGAAC
TTGTTCATGTGATTGGGCTGTGGTGGATGCTGTTATTTTAGTAGCCAGAAGCACAAGAGT
TGAAATGTTTTCTTTGTATGTTGGATCTTCTGATGCATGAAGACAAGCGTTTTGTTTCTT
ATTTATCGTTTAAAGACATGCTTGGTGAACCTTCTGATTGTGTTCTCATCAGTAATCGCA
TACAATCTATTGGTACCTGATATAGATATCTATTTGGCGGTCATTGTGTTTTCGTGTCTA
TGTTATTAACTGTGTCAGTATAGTTCGACTTACAATTGCCCATACTGGTCTTGGAATAAA
TAGATGTCATTTTTTTTGAAACATATAATGTGAAGCGATTGGGATGTTTACTTTACACTT
TATCTGATATATGTCGCTGTTGGAAGTTGGAAGGACCCCCTACCCCCTTCCATCTTTTGC
TCCTTTTTTCTTCTTCTTGTGTAACAAATTTTTGTTCTCCCCAGCTTGAAGCCAATTTGA
TTAAACTGTAAATTACATGCAATAACCTCCAATTAATTTTTGATATACCCTTAATTCAAA
AAATGTAAATTACATACAATAACTCCCAATTAATTTTTGATATAACCTTAATTCAAAAAA
TGTAAATTACATGCAATAACTTCCAATTAATTTTTGATATATCCTTAATTCAAAAAAAGA
TAACGCGCGCATGCGTGTGGTGTAACGGTGTTACGTGACTTGTCAGTTGTCATGTCTTCT
TAATGTTACATGACAAATGTCAGTTGTCATTTCTTCTCAGTGTTAGATGACAACTGTGAG
TTGTCACGTCTTCTCTGGCAATTGAGTGGAACTGCCGTGCCCGCATACTTGTCAGTTGCC
ATGTCTTTCGAGTGTTACATGACAACTGAGTGAAATTGCCGTGCTCGCATGCCTGTTGCC
ATGTCTTTCCAGTGTTACATGACAACTGAGTGGAACTGTCGTGTCCGTATGCATGTCAGT
TGTCATGTCTTCTCAGTATTACGTACATGACAACTTAGTAGAACTGTCGTGTCCGCATGT
CTGTCAGTTGCCATGTTTTTCCAGTGTTACATGACAACTGAGTGGAACTGTCGTATTCGT
ATGCCTGTCAGTTGCCATGTCATCTCAGTGTTACATGGCAACTTAGTGAAACTGTCGTGT
TCGTATGTCTGTCAATTGTCATATTTTTTCAGTGTTACATGACAACTGAGTGGAACTGTC
GTCGCGCGCCCGCACGACTGTCAGTTGCCATGTATTTTTAAGTGTTGCGTGGAGGCAGCG
TGGTGGCAAGCCAGGTCGTGCGGGCGACCGGCTCAGCCACAGGTCGTGCGGGCTACGGGT
CGAGACGTCCGAACGTGCGCGTGCGTGCGGGTCTAGGTGGATGCCACACACGGGATGGAA
CAGATACCTTCCACGTGCCATACGTGCGGCAGATATCGCGACCCTTAATTAAAGATGAAC
TTTCAACGGTGTTGAAAGACTTTGTATGTCGAAGATGAACATGCAACTATTTGAGAGAAC
CTCAACAATGTGGAAAGGAATTTCTTTCAACAATGATGATGATGAGAATTATGTCATAGA
TTTGATGTGATATCGTAACATGGATTTTCGTCGCGCCCTAACAGGTAACAGCAGTACTTG
TTAGCACATGGAATTTGTAAAGCACCTTCAACAAATTATTTCAGAACTTAACCAAGAAAC
AATGATAATTTTTTATAATTTTTTAAGAGACCAACTTCCAAAGAGGTGAACTATTACTAC
AAACTTGATAAAGGAAAGCACTCGCATCGTCGGCCACACTTGGAATGGAGAAAGAGCAAG
AATGTTTTGCTCGAGAACATGTAAACGAATGAGGCCGCCTATTTGTCACTTGTCTATTTT
TATTTTTATTTTTGCTATCAACCGATTCGCTTGAGCTATTGGACTGAAATCCGACGCCCT
GGCTCATTCTTTCCCTTCTTCCTCCTGTCCGACGCCAGCCTAACCGGGAGCGCCACTCAT
CCCTCGCCGCCGCCCATCCCTCTCTGCCGCTCGCCACCGTGCCCCCATCTTCGGCCTCGG
CCCTCGGGGCTTCGTGCAAAATTGACTGATCCAAATTACAATTTCCAAAAAACCGGTGAA
CAGCAACAAATTCGCATCCTATGGTTTGGTCGGCTGATCCAAATTACAGTTTTTAGACAG
CAGTTGAACAGCAAAATCGAAAACAAATTCGGATCCGATGGTTTGGACTTTGGTCGGCTA
GCTAATCCAAGTTACAATTTGAGACTGAAAAAGGAACTCTGGACTCTGGAACACACACGA
ACTTCAGCTCCAGTGCACGCCGCTTCGGCTCGTGGATGCAAAATCATTCAATTGTACCAA
CCCAAACACATGGTCGCACTTCGTATTGATGTACGTATATGAAGTAAACGAGCATAGGTT
ATTTTTTTTTTTAGGGAACGAGCATAAGTTTTTTACCTGAACGTAAGTCGACAATTTCCT
TGCAACTAAACCCAGACAGCAGAACTGCAGAAATATCGCAGTCGAACCTTACATTACATG
TGTGTCGACACAAGAACGTTGTGTGTGCACGCTATCAAATCAAGGTTTCCGGAGCGTCGT
CCTAGTTGACGGCGAACCAAGGAAGCTCCAAGGCATCAGCCGCCGACAGCCTCTTGTGTG
CGTCGCAGGAGAGGAGGCCGCTCAATACTTGGAAGCCCTGTATCGACAGGCAGTCCTCTG
GAAACATCTCGCGCAGCCTGTTGCGGTGGGGGGTGCTCGTCGTCGGCGGCGGCGCCACCA
GCTCGCCGGCGAGCGGCATGGAGTTGTAGGACGGCCAGGAGATCTGGTCCGGCACGCCAA
GAATGTAGAAGATCCTGAGGAGCTGGTCGGCGTCGTCCGCCGCGCGGCCAAAGAGCCGGT
CGCCCAGGAGGATCTCGGCCATGACGCAGCCGAGCGACCAGGCGTCCACCTTGGCGTCGT
AGTCGGGCTTCCCCAGGAGGATCTCCGGGGCCATGTAGCTGCGGGTGCCATGCAGGCCGT
ACGGCGGGGACTGGGTCGACGTGCGCATGGCGAGCCCGAAGTCGCATATCTTGACGCCGT
CGCCGACGAGGACGTTCTCGGGCTTGATGTCCCGGTGGACGACGCCGCAGCGCTCGTGCA
TGTGCTTGGCGCCGCCCAGGAGCTGCCGCATGAGGTAGCGCACGACGTCCTCCTGGAACG
GGCAGCCGCGGCGGGCGCCGTGGAGGACGTGGTGGAGGCTTGGCCCGACGTACTCCATGA
CGAGGGAGAGCCTGTCGTCGGCGCCGGGGTCGGAGGACATGGCACGCAGCTGGACGATGG
AGCGGTGGCCGCGGCACGCCCTGAGGAGGCCGGCCTCCCGCCGGACCGCGTCGTGGCTGC
TCGAGCTGAGGGTCTTGATGGCCACGCTGTGGACTTAAATGTTCGTTTCTTCAGAATGTC
AGTTAGTTAGTCGTTTTTTCCCTTCCGTTTGAGCTGCAAATAACAGCTAGTTAGCTGAGT
AGATAGGTTAGTTAGGCTAGCTTGTTTTTCTCCTGAAGAAGGGGTCTACCGTCCGCATGA
ACTGGATTGTGGGATCGCGCGATCGTGGTGGTTGTAGCGGGCGTTTTGCTCGGGCTGTTG
GTGGCTCTAGGTCGACTGTAACTGAATAAGAGTAGCAGAGAAATACAGAAAAGGATGCCA
GTTGTTCGCATCGCCAAAAATCCTCGAGCTCCTGTGATCGTGTGTGTGTGATCCTGATCG
ATAGAGAGTGAGAGAGAGTTGATCCGATTAGTGCTTACAATTGGCATCAGAGCTTCGTCA
ACCTCGGGACCATGGCCGGAAGCGAGTAGCGCAGGAGGGTTGCCGCCGCCGACGGGTCCA
GGACGCCGTCGCCCAGGCGCGGGCGAACCCTGACGCGTTCACCCATGGGGAGGCGCGGAC
GCGCTGCGCGCGGGCAGGAGATCGCCGCGCCGGTAGTGCAGAGGCGGGAGGTGGCCCTGC
CGACGGTCTTCCCCACCCTGACTCGGAGCAACTACGGCGA