morexGenes - Barley RNA-seq Database

Contig contig_41655
Source Contig contig_41655
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41655 (6264 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_41655

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57334	2	2166 bp	MLOC_57334.1	Available	Available	LOC_Os06g02380.2, FRAME:-3, EVALUE:0.0, 13106.m00160 protein T-complex protein, putative, expressed
CDS Structure of MLOC_57334

Contig Sequence (6264 bp)

>contig_41655 6264 assembly3_WGSMorex_rbca.fasta
GGAAGAAGGGCTCGGTTGGCCTTATCCAGGGGCTCTTCGGCCAGCCGTGGGCCGACAGCA
GGCTCTTCGGCCACCCGCGGGCCGACAGGCCCTCTTCGGCCTCCCGCCAGGACCCACTTC
GGCCCACTAGAGGCCGACGGGGTGCTATTTTTGACTTTTTTCAATTCCGACAAATGATTT
TCGGATTTGGTAGAAAATAGGTAGTACTTTTGAAAAAAAAACTACAAATTTAGTTGTTCT
TGACATTTTGTTCGCCATATTCCGCCCGATTCAGTTTGGGAGGAATAGCAATTGGTTTGG
CGATAGAGAAGGTTTGAAGAATGGGGACGACAAAGGAAGGCGAGACTCCACGGCAGAGGG
AGCTCCCGGGTTATCCAAGTTCCCAGCAACACAGATAGTAAACCGTTGTATGGACTGTCT
GTTTCTCTGATGAAAATCAGCCAGAGCGTTTAGTACAACGCTAACATAGTAGCAATAGCA
ACTCTGAAACAAAAAACAGGACCTGAGACGTGAAATGGCATACATTCCTGCGCGTAAAAC
GAGAGCCGTAAGCTGTTCCAATTACATCAAGAAATTTCCGCTAAATGTTTCTCTGCTTAT
TTCGCCGTTCTGGCAGGCACATCACATTGCATTTTTCTTATCTCAAAACTACATCATCAT
CATCATCAATCTCTCAAAACTTGGTTCATGCTACCAAAAATTAAACCACATCCTCTGGAG
AGACTCCACCGTCGCTCATCAGTATCCGAAGCCTGATTCATCATCAAAGCAAGCACAGAT
CAGCAACATGCTCCATTCGGGGACTGCAACGTTTGCTCACCGGCTAAAAGGGGTTTGAAG
CTTACCGGAGTTGTCCATGGGGTTGACGAGGGGCGCGGGCTCAGGCTCCTTGATCTCGAC
GACCACCACGTCCGACGTCAGGAAGGTCTTGGCCACCGACGCGGCATGCTCCAGGCAACA
TCTCACCACCTGCATCATCAGGAACATAAAATGAGGATCATCTTCCATCTTTAGTTTTTT
ATTTTTCAGCAGACAATATGGGGGAAGAGAGAACTAGATAGTATCATCATGGTCTTTATT
TCGACCATAGCTGCTTCCTTTTTCCCTTTCCCTTTAATCCTTTCACAGTTCCCCATGTTC
TTTTGGCTTTATTATGTTTGCAATTGCAATTATACTAAATTAAAGCTAATGTAGATTAGC
TTTCATTATCCAAATCGTTTCCTTTGTCTTTCTTGGACTAGACTCTACAAGCTTAGATCT
GGACACTTTATTCCAAAGTAGCAACACTAAATCTCCCAAAAGAAAAAGGGTGGTTTAGCC
TAGTTAAAAAAGCGAGAAGCAACCCAACTATCAAGTCTGCACTCTATCCATTTTCAGAAT
GGTGCAAAGGATGACTGCAGGGGCGGCCATAGGGCTACAGACCTTAGTGGGGTCGATGAT
ACCAGCAGCCATCAAGTCCTCGTACTGCCCAGTGGCTGCGTTGTAGCCGAACTTGAAGTT
GTCGTTAGAAAGAACCTGGTACAGCAGCATTTTTCATGTTACTCAGATACAGGCAGGGAA
ATAAGAAATTTTGTTCTTGTTGTGAAAACTAGCTCTAACCTTCTCGGTAACAACACTGCC
ATTGACACCAGCATTCTTGGCGATCAACTTGAGTGGGTAGCACAGCGCCCTCCTCACTAT
CTCAGCTCCGACCTAGAAAAGTTGGTATTACAGCATGTCAAACATGAATGATCAATGATT
TGATATGATTGATTGTGACCCACATCCAGCGGACCGCATTGTATGCAAGTATTAGAAGCC
TTGGGGAATTTCATTTTTTTTTACCTTCTGCTCGTCGTTCTCCAGGGTGTCCTTGATGGC
ATCAACCTTAGCAGCCAGCCTCAAAAGAGTGCACCCTCCACCAACAACAATACCTTCCTC
AACGGCAGCCTGCAAAAGAAAGAATCGATTTATAGAATGTTTAAGGAAGTAATAACAAAA
CCAATGGGCTTAACTCTGCTTCTTTGACAAGCAGATACGAAGCTGACAGCTAAAACTATT
TAATGACACAACATTGTTTGACTTACCTTGGTTGCGTTTAGAGCATCCTCAACTCGCAAC
TTCTTCTCCTTAAGTTCAGTTTCTGTTTGTGCTCCCACCTACCAAGTCACAAGCCATGAG
TTACTACAGTTACCATTCCAGCAGGGAATGAAGCAAAAGAGCAGCATGCCAAAAATAACA
GTGTCCTCCATTAATACCTGAATAACAGCAACACCACCGGCGAGCTTTGCAATCCTCTCA
TTGAGTTTTTCCTTCTCGTAGTCTTGCTCTGCTACCTGTGAATCAGCAACAACAACTTAG
AATCAGACTTAAAGACTGATGCTTCTTAAGTCTTGGATAAACAGAACAACCACACACAGA
GCTCAAACAAAGAAAATTATAATATACACCCAGGATGAAGCATGTAAACCAACCAAACTA
CATTCTACATAATACTAAGAAATTTCCAATCTGCACCCAGTACCAGGCATGATGAAATGG
AGCCTTCTAGAACTGGATACCGAGTCAATTCAGGGGTAGAGAAAAGAAAATGGCATACCT
CAATGAGATTTTTGATCTGTGCAACCCTCTTAGTCACTTCTTCCTGGGTGCTGCCATCAC
CAACTATTGTTGTCGACTCTTTTGTAAGGACAACCTTTGCAGCCGTTCCTAGAACTGTGT
TATCTGCCTTGTCAAGTGTGAGTCCAACCTCGTCTCTGATAACAGTTCCTGCAAAAAAAT
GTGCGTCACGAACAAGAAGCATAGCTGATCATGGAAACATTCATCTGAGATGTATTTTCG
CCTCACCTCCGGTGAGGATGGCAATGTCGTCCAGGTACTGGGTCTTGCGCTCTCCAAAAC
CAGGGGCTTTGATAGCACAGATTTTCAAAGAACCTCTTAGCTTGTTGACAACAAGGGTTG
CAAGAGCCTCCTGCTCAATATCCTCAGCAATGATCAGGATTGGGTATTGACCCCTAATGG
CTTCCTCCAGAACATTGATAAGATCCCGTGCGTTGGTGATTTTCTTGTCAACCAAAAGCA
GCTGAAGAAAAAAGATCAGAACACATCAATAATCTGAATCTGAACCGTAAAGACAGTAAG
CAGCAGCAAAAACAAACTGATAGATGCTCAGATTCCAGCTTACCTTGCAGTTCTCGTACT
CGGTGGTCATTTTCTCGCTGTCGGTAACGAAATAAGGAGAGATATAACCACGCTCAAACT
GCATTCCCTCCACAACATAAAGATTGTTCTCGGAACTCCTCCCCTCTTCAAGGGTAACCA
CTCCCTTCCGGCCAACCTTGCTCATAGCCTCTGCTATCATGTTACCGATTTCGTAGTTGT
TGCCAGCACTGACCGCAGCAACATCGGCAAGCTCACTGTCTTCAACCTACAGAGAGAACA
TGCCTTCGTAAATAGAACTAATAAGCAAGTTACATATAGCAGCCATCTCACTCAAGTTGG
GCATTAGTTAAATACTATTAAGGGCCAGACTGCCAAAACTAGGGACACTTCGACAGCATA
ATAGGCTAATGATTAATTTTACCTCCTTTGACATCTTCTTAAGTTCAAGGACTAGTGCTT
TCGCTGTTTTCTCAATACCACGAGTAATTTGAACAGGGTTGGCACCAGCTGCAATAACCT
GAATAATAACAGACCCGTTTTTAGATTTACCAAACAGTAACACCACACTCAAATCACAAG
TAACAATAAATCTCTTCTAGTGGCATACCTTAACACCCTCAGCAATGAGCCCCTGAGCAA
GGACGACAGAAGTAGTTGTTCCATCTCCAGCTAAATCGTTGGTCTTCGCTGCAGCTTGCC
TAACCAACTTAGCTCCAATATTTTCAACAGGATCCTCCAGCTCAACCTGCAGTACAACAA
TTGTTATTGAATATTCTGCTGGGGCTTTAAACTAAAATCATGATCATGCTCGTATTGCCA
GAAAGTAATTACACTCGATACATGTATATACGGATACAACATGCAACCTCGTGTGCTTTG
AATGATAAAAAATATGTGCGTGATTACTAAAAGCAATCTTCTCAGTACTAGAAATGTAGC
AGAAAAACTTGCTGATTGCCTCGTCACGTGGCAATATGCAATGTACCTCTCTTGCAACTG
TAACACCATCATTGACAATCTTAGGGGAGCCGTACTTGCTCTCCAAAACAACATTCCTTC
CCTTTGGTCCCAATGTAACTCCAACAAGATCTGCCAGCTTGTTGACTCCAACCTAAAATA
TACAAACAGCTCATCAGCGTCTGTCCAATGCTCACCAGGCACTATCATATAGTGAGAATT
CAAAACAGGATATGCACAAAGTGTGAATCTCACCTGGAGCTTCTTGGTGGCTGAGCCATC
CTTGTTGAAGTAGAGCTCCTTAGCTGCTTTAACTCTGAAGTTGCATTTCCTCTGAAGGCG
CACATGGCGTGGCCTGTCGGCAAGGGAGATAGATGACAATGAAAATGGCTTCTTGTCTGA
TACAAGGCCAGTTGGAGCTGCCATGAGCCCAACGGTAGAAGTGGCGCCAAATGGTGAAGC
CATGTTTTCCTGTGCAGCAATGATAATATCAGAATGACAGACCAATTTAGAGAAACATGT
ATAAAGCCCAAAATACAGAGATCTTGTAAGCACAAGAGGACACAATGAAGGTTCACTCCA
GATAATGGAAGTGGAGGCAACCACATGTAACCAAGGCACTAAATCAGAGTAGACGCTTTA
ACTTTTTGTTGTCCTACAAATGTACATCAAAACAAGTAGATACAAATAAGCAGGGTGTTC
CATGCATAAGTTGGAAACAGAGTTTTGTGTCTGTCCTCCAATTTTGCAGAAACAGCAGTT
GACCACTCTACTACCCTAGTTTGTGTTCTAGGAACAACAAGTAGGGCCAACCAATACAGT
GCACTGACTTCAAATTTACGCGCTATACGGCGCCCAAGCAGTGTCAGGGATTTAAGATTA
GCTATAATCACCGTAACACCGTTCCCCACCAATGTACCCACCACAGCAGGGCACTACGCA
CGACGCCGGAGACCAGGCCAGCCTCCCGAGCGCCGACAGCCCGTGGCATCTGGGCGGAAC
GGCTCCAATCCCACTACTACAGTAGCAACTATAGCAAAGCACACACCAACCCAGACCCAG
AACCGCGCGCCCGTCGAATTCGCCGGCAGAACCTACTGGAAATTCCTCCCCGCGTCGAGG
CCTGTACCAAAACACGGCGCGTCCTGCCCATCTAATCCTCGGAATACCCCGCCCGAATGC
GACGGCCCGGCGGCCGAATTCAGCGGGCGAGGGCCGCGCGGCGCCCGGAGGCGGGAGGGG
AAGAGGGAGGGGATGGGGGGTAGAGGTTGTAGCTTACCTTGGCGGAGCGGAGGAGGAGCG
CGGAGGCGGGGCGGAGAGGATAAGGCTGCGGCCTCGGGAGGGCGGGTGCGGGTGAGGGGT
TTGCTTTGGGTGGGTTGGGGGAGGAGGAGGAAGGGGATGAGGTCGCTCTTAAATACACGC
CAGGGTTTTACAAAGGGGATTGGTTCTTGGTTGGTGGCATCTTTCCGATCCCACCCTTGG
AAAAGTGCGTATTTCCGATAGCACTAATAATAAGATTTGTACAAGGACCCATTATGTTAT
TACCATGATATATACCACCGGCCTCCCAAGACGGACCGGGCAGACGGCCGGGGCAGTGCT
CGATCATAAAAACTGACCTAGCTCGACCCCTCAAACTGGCCACCCCACACCACTCATAGC
TCCGTGCCGCTGCTCCTCAGGGGCTTTCGGTGGGTGCTTCTGCCCGTGTCGTTGGCGCCG
CAGACGCGGACGCCCAAATTGGAGGTGTGCGTCGCCCGCCGCGAGAGGCAACGTGCTAAG
AAGAGGTCGGCGGCGGCTGCATAGTCTTCGCGTTGTCGACGCGGATCGCTGACGGCTCCT
GGTAAGGCCGAACAACTCCTCACGGATGTCTACCCCCGCTCGCTGAAGACGGCAAAGACG
GACGACCGTCGGGCCTGTCGGAAGAACACCAAGGCGCTTTGGCTTGGTATCGAGCAATCA
AACTCGCGAAGTGGCAGAGAAGGCGCCTGCGAAAGGAATAGCGATGAAGCACAAGAGGCA
ACAAAATCATGGTTGGAAATATGCCCTAGAGGCNNNNNTAAATTAGTTATTATCATATTT
TCTTGTTTATGATAATCGTTTATTATCCATGCTATATAATTGTATTGATTGTAAACTCAA
ATATATGTGTGCATACATAGACAA