Map Locations of contig_41580 (9163 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_41580

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57260 1 1388 bp MLOC_57260.1 Available Available LOC_Os08g41290.1, FRAME:+1, EVALUE:6e-87, 13108.m04431 protein AIR12, putative, expressed





CDS Structure of MLOC_57260






Contig Sequence (9163 bp)

>contig_41580 9163 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCTCCCCCCCGCGCGTGCGCGATGTCGACCGCCGAGGCGTCTCCGACGCC
GTCGCCGCGCATCACCGCGGGCTATGTTACATGGTACGGGGATACGGATACGGGGATACC
GAAACGGCGATACGGGAAAACGACATTTTCTAAATATAGACTTACGGGGATACGACATGT
ATATGTATAAATGCATAAAAATTCAGCACCACTAAACAATAATTTTGAGGACTCTAAGTG
ATTTAGGTTTTGTCACCCATCGAGGAGGCCTCTTCTGATAGGCTGTAACAGTCCCATACA
CGTATATGTATAAATGTGCAGGCCCGTACATGTCCCTTCATGACTAGGGTAAACTGTCCC
TTGTGTGTCTCAAGCCATTTTTTGATTTTCCTCTTTTATTTTAATTCAGAAAATGGGATA
CTTAGGGATACATGTATCCCACGCGTATCTGTGTGTATCCCCGTTTCGGTGCAGTATCCT
GCACCGATTCGACACCTATGCGCCGTATCCCTGCAACGCAGACCGCGGGTATAGGTATGT
GTCCGGGCGCCGCCTACACATCCATGATCGCAACTGTCAGAAACCCCGATGCCGACACGC
CACGCGGGCTTTGCCCGACGACGACAAAGAGATGGGAGGGGATGTGGGGAGGAGGGCTTG
ATGGAGCCGGCGGACTCCCGGCGCCGCATGGAGGAGGTCATGGGGTGGGTTAAGTCGTGG
GGTAAAATGTGACCGTATCCTACATCTTTAGTGGATTGTTAGACATGACTCGGAGGAGCA
TGCCACGGTCGACAGCTCCGTATATTTCCGGAGGTTAAGGAGCATTAGATTATGTTCAAA
CTTGAAAGCTCGCTCCCAAACATAACAGGCTGACCAGGCACGAATCATTGAAGAAATGAT
ACACACACATCTGCGCCGTAACTTAAAGCTCCAGCTGAGTTGGGTTCGTTCGATCCACAC
ACCCTGTAAAAGAATAGGAAACATCGAAAAAAGCGTAGCCGGGCCGGCACGGCCACGACC
AGAAAAGTGTCCACACCATAATCATAGACGATTGAGTTTGCTTCTGTGAGATGTCTGCGC
CTTTGCGGTGATCCCCCAACTTTTCTGTGTAAACGAAGAGCCCTAGCTGATGGTCTTTGT
TTCTGGCAGTTTCTTCCACGGGTGTGGTTTATCTTAACCAAATGCAGCCTGCCTGTCGTC
TTCTCTTTCCAGTGCTGAATGGCGTCGCGTGAAGGTTGTGTATCCAACTAATGTAATCTA
TCTACCCTAGGTGACCATTTGGCAGCTTGTCGAGGGGCATCATCAGCACATCACGGGAGT
GGAGTGATCGTCTCCAATTGATTACTCCCTAGACGGAACCCAGTTGTGCAGTGCTAGTAT
AGTACGTAGTACTCTATTTGCTAGTAGCAGCACTGAATTGAGTTGGTTTATTTGCCTGCG
TTTGAAATTTCCAGCCGTTGCAATTTGTGCAGGGTACGGTGACATAATTGATTCGATCAC
AGGTCAAGACAGAGAGGTGGAGCAGATGGGAGTTAAGAGTTACTGCTGCTGCTGCTTGCA
CATGAATGCGGCGACAGGGTCGGTAGGTAGATCTATTGGAAAAGGGACGGCAAGGTTGTT
TGAAATGGCTCCGTAATTTTTTGATGTGAGATCATACTTCCATTCCGTGGAAGCAGCCGT
GCCGATTCTGTTGACACAAGATTACCAATAACAAATTGCACTCACATTCCACACAATCAA
TCAATCAGTTTGGTGTGCAGCTCCACGTTACTCCATTCTGTTACTCGATCGCGTTCTTGT
TTCCAAGATTCTACTGTTAAACATTTGAATTCACGCGGTCAGATGTTACACCCTGCGTGC
TGACCGATTCAAATCAGATACAATTCGTGGGAAACAACGTGGAATCCGCTCCACTCTGTA
GTGTGTAGTTACGCGTGCATGTGGATCGTATAATTGCACGCATCACATGGAGTTGTAAAC
TGTCACAGCGTTCGTCATCGTCGTAATTAGGAGTATCGTGAATCTTCTAACTGTCACAGC
ATTCGTCATCACCATCCCTCTGCTCTGCAAGCATGGCGATCAACGGGTCAACCTTCAACC
TTCAAAGTCCAAACGTGTGCCCAGGCGCAGCGGTGAGCGTGCAGGCATCCATGTGCCGCT
GCCCCTGGCACGCCGAGATAAATGCGAGATACCATATGATATCCACATGATCATCATTCA
GGCCAAGAAAAAGTTATCCACATGACGGTGACCAGATCTGAGCTCAGTCAACGATGATAA
CTTTGATATCGCGCGAGGAGTAGCAGTGTAGTACCAACTCCAGTAATAACCTTGCATCTT
TTTAGAAGTGTTTCCTAAGCTAACCTTTGCATGTTAGGTTTACTGTTTCTTTTTAATACG
TATCGCCGTCCCTTGTGGGCACGGCAACGTAACATGCACAGGAACGTAACATGCACGAGG
CATGCATTCAAGCGGCCGGTCCATGAGCGTGGAACAGTAGTAGTAGCTCTTTGCGCGTTG
CGTAGACGCCGGAAGAAATTTCACACGCATTGAAACGCAGCGTGATTCGTGAAAGAGGAA
AATCAGCCCACATGCAATGCGAACTTGCAATGAAATGTCTGCGTTTCTTGGATAGTTGGG
TCAGCTCCCACAAGGAGATACCATCAGTGGCCATTGGTTGGTTATCTTCTTTCTTTTAGG
TGATGCGGTGTACTAGTGATGTGACTGGCCCGGCTCGGAGCACTGTCACGTGCATGGTTT
CGTTGCTTGGAGCCCGGCGTGCCGTCGACCGCGCCTCTTCTGCGTTGCCTCCGTCCTCGT
TTGGCACAACGGGCAATAATATCGTGGCCGCGTCCTTATGGCACCTTCTGCACCCAGCCA
CCGACGCATCGTCTTGTCTAGCTTCAGTTGCCCCTCCCCCCATTCGCGCCAATTCGGTGC
GAGTTTTTTTTTTAACATATACTCTCTCCGTTTCTAAATATAAGTCTTTTAAAAGATTTT
ACTAAAAGTCTACGTACGAAACAAAATAGATGAATCTACACTTTAAAGTATGTCTATATA
CATATATATGTAGTCCATTAGTAAAACCTCTAAAAGATTTATATTTAGAAGCGGAGGAAG
TACACATGAAATATCCTTATGACGAAAAAGTTTGTCATTTCTTATATTAATACTTCCTCC
GTTCCTAAATATAGGTCTTTTTAGAGATTGTACCAGTGGACTACACTACGTTTTAAAATA
TGTCTATGTACATTCGTATCAAGTCCTCTAATGAAATCAACATGTGGATGAATGGTTAGA
GGGACTGTGTTATCTTTAGTCTATTAGGATTCAAGTACCGTTGTTTGCATTATTTATGGA
TTTATTTTAGAATTTTCGGCGATACTTTTTAGTAGGAGGAGATGTTTCCATGCTCGTAAA
TCTCGAGATGATATGTCAGATTTATTTCAAGATTTTCGACGATACTTTTCAATGGGACGA
CATGATATGTCAGATTTATTTCAGAATTTTCAGCGATATTTTTCTAGTGAAAGGAGACGT
TTTCATGCTTGTAAATCTCGAGATGATATGCCAGATTTATTTCAGGATTTTTGCTGATAC
TTTTTCAGTGAGATGAGATGATATGCCAGATTTATTTCAGGATTTTCAGCGATACTTTTT
CAATGAAAGAAGACGTTTTCGTGTTTCTAAATCTCGAAATAATATGCTAGCTCAGGCGTG
TTTATATGAATGTGTACATATGTATATTCATTAAAGTGAGTGTATGCGTGTTTTATACGA
GGGATTGCATGTGTACTGTGTTAAAAAAAAAATAGTGTGTGCCGAAGAATCCATCTGCAT
ACACCCACCGTCTTTGATGGATTTATGTCTGAACCGAGGACACCTGTGGCCAGCACACGC
ACACCAAATTTACAGGAGTCATTACAACCCATTTTTTTTATCGCCAACATGTCTATACAC
TGACCTAGAAAGGCTTCATTAGCCTTCACACCAAACCAAATCCAGACTTTGCAATGAGAA
AGAAAACACAAATTTAACCACAAACCGACCCAAAACCTTCAAATATTACACATAGCCCCA
CCTCCCCTGTTATAAAACCCCACCGTCCCCGCGTCCTCACCCCGCACTGCACTGACACTC
CGAGAACAACAAACACACACACACAAACCAGCACAAGTCCTCACTCACCACTGACGCTCC
GAATCTAGCGGCGGCATATGGCCTCCACGATGCCGCGCCACATCGCGCTGCTGTTGCTCC
TGCTCCTCGTGGCGTCCACGCGCGCGGCGTCCGCGGCCGGCGCCGGCGCGTGCGCGGCCG
AGAAGTTCCCGGCGGGGAAGACGTACGCCAAGTGCGAGGACCTCCCGCAGCTGGGGGCCG
CGCTGCACTGGACCTACGACGAGTCCAAGTCGTCCCTCTCGCTGGCGTTCGTGGCCGCGC
CGGCGGGGGCCAACGGGTGGGTGGCCTGGGCGCTCAACCCCACGGGCGAGGGCATGGCCG
GCGCGCAGGCGCTCGTGGCGCTCAAGGGCTCCGGCGCCGCCGCGCCCACCGTCAGGACGT
ACAACATCACCGGCTACGTGCCGCTCGGCAAGGCCTCCACGCCCATCGCGTTCCCGGCCA
CCGACCTCGCCGCCGACTCCGGCAGCGCCGGCAAGATCCGGCTCTACGGCAAGCTGCAGC
TGCACAGCGGCATGAAGGCCGTCAACCATATATGGCAGGTCGGCACCTCCGTCACCGCCG
GGGCCCCCGACAAGCACGCTTTCGCCCCCGGCAACCTCGCCTCCAAGTCCAAGCTCGTCC
TCTCGGGCAAAGCGGCTTCCGCGACCTCGCCTTCGCCGTCGCCCGCCCCCATGGCCGGTG
GCCCGTCCGGAAGCGACGCCGGCGCGGCGGCGACCACGGCGCCTTCTGCCGGCAAGTCCC
CGTCGGCCGCGGCGGCGGCCGGCGTGTCGGCGCCGGCACTCCTTGTGCTCGCGTTGATGG
GCCTCCTCGCGGTAGTATGATGGCATGAATGAGTACTATAATTAGCGGAGGTGGCAGTGG
GCATGGGGAGGAAGCATTTCCTGAACAATATAATGTTCCAATTTTGTCGATCGATCTTGC
TTTTGCTGCCTATTCTTTTTCCTATTTTCGATTGAAATAAAAGCTGGTTCTTGTACTGAT
TATTATCGAGCTGTTGTTTGTAGGTAGAAAGTAGTACTAGCTGTAAGTGATTAGTATTGT
AGTGGACATGTCACTGAGTTTATCATATGACTGATATAATTTTTAGCATCAAAGGAGCAA
GTGTTTGGTAGTGCAGCAGGAGTATCTCTTGCATTCTGTGCGGTGGAGTTGCCCGATCTG
GCCTAGTGATACACGCTGATTCGATTTATTTAAAGCCCGGGCACCGAGTGAGAAGCAAGA
TTTTGAAACATAGGAATGCAAAATCCACGGATTAGAGTGTCATGTACACTTGATTGCGCA
AATAAAAACACATTACTTGGTGGGCTTGATGGGAAATGAAGAATGAAGTACAAATGAATT
ATAAGTAAAAGTCTCTATGGTTTGCAATTCCACTAATCAAACGACACACCTAAAACTAAA
ATTCATAAGGATTTAAATACTCCATAATTATTTTTAAAGATTCTTGGAATTAAGGAGGCC
TTTTACCTTTTATTTTTTTTGTAGGGCATCATTTTCATTACAGATTTGATTTTTTAATGA
TAAGCACTGAGCATGCAGGCAATCCTGTCCCACATTGGCAGGTCATCAACATGGATTTCT
GGCTCTTCATGTGCGCATGCCAGTTTGTTAATGCTCCTGAGCCCGTCCGTCAGTCCAGCC
CGAGACCCCGGGTTGATATTTTCTTCACGCTCTCCTGCCAACGAGTAAACGCGCTCACCA
TCCTTCTCCAACTTGGTTTTTATTTATTTTACCGACACAAGCCCGACTACTTGGGTCAGT
CTTCACCAAAAAAATGTACTAAACAACTCATGTCATTTGAAGTTTTGACCTACTGGTCGC
TCTGTAGCTGGACAGCTGGGTCATCTAGATCATCATTTTTTTCTACTACAAAAGAAATAC
TAGCCATCCATACATTATAGAACGTGGGTGGTGTTCCACCCTGTCTACAAACAAAAGATG
GAAAAGAACATGGACTTTTGTTCAGAGCGAAAAAGAAGAAATAAAAGGTTGTACTGCCGG
AACCTAGTACGTTGGCCCCTTCAAGTTTCAAGTCCAGACGCCACATTTGCTGCGTCGCGC
AGCGCTAGTCGGTAGGTGGAGGCAATGATGCACCACCGTGTCGTCGCCTCGTCGGCTTGT
TGCATGGGTGCAACTGCCCGGCCCGGACGGCTAGCTGGCTGCCCTTTCCAGCTTCCGGCT
GGTGCGTACATGGACCTCACCACCTCCATGATCGCCGTGAAGCTGGCGGCGTGTGCTTTG
CTCGCTCCCGTCCCGTGCGTGATGCTGAATTACTGATGCAGTGCAGTGCACGCATCTGTG
GTGGTAGACTGGTAGTAGTAATACTCAGTATAGAGAGGATGGATGGATCCAATTCCAACG
GGTGACGAGGTAGCAAGTTCGGTGTGACGAGGGCCGGCGCACTTCCGTTCACGAATGGCA
GCTGATGGAGGACCGGCCGCTCCACGGTCGTTCACACTTCGCTTGGCTGGATTCCAGCGA
GCGGTTCGTCTGGTAAAGCATGCATAGCCAAGGGACCCGACCGGCAGAGGTGAGTTCTAT
TGGACCCCGGCGCCTGCTGCCGCTAGCTAGCGTCTGACCGTGATCACTTGCGGGTGAGTG
GCGAAAGTGCGCTCCTAGCTAGCAACATCTCAGATGAGCACATGGCTGTCAAATGTGTCG
GGGGAACGCCTCAAATTCCTTCTCTCTGCATCCAAATTTCTCATTTCAAATTTTAAAACC
ATATGAACCATATAAATAAAACATCTTATGTACTACGCAGATCGACTAAATCCGTCTTCG
ACTACTCGATGTCGTCGGAGATGTCCACTATAGCCGATTCGGATTCCGAATACATGGGGC
AAATGCAACCCCGGCTCCTTCACATGCTCACGAGCTGGCGCCACCTCCGTGCCAAGTTCG
ACGAAAAACACGTCGGTCGTCGACTGATGGGGCCACCTACTAGCGAAAGGGTTATAGACT
ACATATTCAGGCTCACCTAAGGTCTCTTATGGCCATTAAAGTTTGAAGACTACACATGCA
TTCAGATGCATGCGTCGAGACCACTCGGACCCATGGAGTCAATCAGACATCTTTCAATCA
GTCGGCCAGATACCAGCACTCGAACAAAGAAAAGGCGTGAAGGACGTGGGAGATGCAATG
GCCGGGGGACTTAACATCACACATGAAGTGGAGTCATGGATAGCGTTACGAGTAACAACC
GTAGTTAGGACAACAGTTTCTACTAACTCCCATAGTTACTCGCATTCATTGCCCTTTAAT
GACGCTCGGCGGGTCTTGCAAACTCTATATAACCACCCCGAGCTTCTGGACAAGGGTTCA
ACATTCTTTGTAATCAAACAATCCGAGAGAAAGCACAAGCCTTCGCGCATGAGACGTAGG
GTCTTTACCTCTCCGAGAGGAGCCCGAACTCGGTAAATCCGAGTGATACAGTTGCGTCAT
AGTTATGCTCCGCCCCTCATTCGTACCCCTAGTATTCATTGTAACGCTTGTTCCCTCTAG
AGTTGGCTGCCAACGTGAGGCTGCGCGTCTACGATGCCGGCACAAGTGGGATTTACCGGT
CATCATGATGACCCTCGGCGAAGAGATTATGTTCGGTTCCCTCAGAATCACCGTCGATGA
CTCGGTGTGCGTTCGAAGTCTTACTCCGCCAGTCGTTAGTTCAGTACCGCGAGGCACCAC
TCCTTTCAACTAGACGTCGTCAAAAATGCTTCGGGCGCTGACGACTCGAGCCTTGGATCA
AACATGCCATGGCTCTTCAGACCACGACCGAGCAGGTGGCTGTCGGATTTCGGGCTCTGC
AAANNNNNNNGGATTCGAACTCAGGGGCGCGCGCAGAGACCACGTAGCAGATTCGATCCC
TAGGCTCGCTGCTCGACGGGCAAAGCACAGAACTCACTCGATGGTGAGGAAGACACAAGA
CACGGTAGTTTACCCAGGTTCGGGTCACTGGGAAGCGTAAAACCCTACTCCNNNNNNGGT
GGATTGCCTCTCGTGGAGGTTGAGGAACGAACTGGTACAGTGTTCTCCGGCCTCCTGAGG
CTAGGCGACCTTAGTGGTTCGATTGTGGATGAGTGAATCGTCCCCCTCCCTACAAAGCAG
TCTATCCTCCATTTATATCGGCGGCCCTGGTCCTCTTCCCTTATCGTTTTGTAGGGAAGG
GATCCCACATTGGCCAATTTCGAAGGGGAACATGGGAACATGCTCCCCTGCCCAAAGGTG
GACTTCGCCTGCAAAGTAGCTGCCGACGCTACAGGGCCGGGCCCGAGACGACGTTTGTCC
TGCTAGCGGGCAGCGACGGCCTTGTTGCACCAGAAAGGAAACCTTTGGAAGATGCCCCGG
GGACCCTCGTACGCCCTTGCTCCCTTTGCACTAAAGGGGAAACTGCGTCGTCGTCCTCTA
TGCTACTCGCATGTCCTTCCCATGCGTCATCCTTGACTACTGAGGCCGAGCCTTGCCTCG
GAATGTCCGCCGCTCCGGGGGGGGATCCTGAGCCCCCCTCCCCCGCAGGTCTTGATGTCG
TTCCTCCTCGCGAGGCTTNNNNNNNNNNGAGGGCCTTGCCTTGAGTGACGCCGAGCCTGC
GGGCGTCTAGTTGATGAAGTGGGCCAGCCCTGGGCCGCAGACAGGTAGGTCTGGGTATCC
CCATTTCCAAAATGGCGACAGTAGCCCCCGGGCCCAAGGCGCGCCTTGGCTGGCTTCCTG
GCGAAGCCTTGTGGGCAGCCTGAAGCTTCGCGAGCCCTAAATATCTGCGGACCAGGCTCC
ACACGTGTTGCGTAGCCAAGTGGCAACGCCCCTAGTTCCCGAGGCGACCGGAGCCGCGCT
TGGACTGATGCGACGCCTGGGCACTGCGCCAACCATCATTGTTCCTTGGAGGCGACGCCC
GTGCACACGTCGCGTGGATGCGCCCCTTGTGAACCGTGTGGGCCCGGGAACGTGAGAGGA
CGTGAGCCCGTTCTCGACGACCTATTTAACCCGGCGAGGGCGA