Map Locations of contig_41542 (9302 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41542

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57234 2 929 bp MLOC_57234.1 Available Available LOC_Os04g43200.1, FRAME:-3, EVALUE:6e-125, 13104.m04283 protein caleosin related protein, putative, expressed





CDS Structure of MLOC_57234






Contig Sequence (9302 bp)

>contig_41542 9302 assembly3_WGSMorex_rbca.fasta
TTATAAAACTGAGAATTTTGAAATAAAAGTTTTAAGAAAACATAAAATGTTTGTGAATTC
AAAAAATGCTCGGGATTTTTGCAAAAATATTCGCATATTCAGAAAAATGTTCATAATTTG
GAGAACAATGTTGGTGAAAACAATAAAGTCCATGATTCTCAAAAAAAAGTTTATGTATTA
TTTTTCGATGGCAATTGAAAAAAAGTTTGCTAATTCAAAAAATGGTCATGCATTTTAAAA
ATGTCCTAAAATTTTAAAGACATAATATGACCAGCATCATTAGTGATTTGAATTGTTTTT
CTCCCGTCGCAACGCATGAACCCTTTTGCTATTGATTAAAAAGCGTACAACTTTATTCTC
TTAACTTCGTATCAGTTCCCTCTTATTTCATAGACATACATTAGGTAATTCATCAATCTG
ATCGTACTCATGAAGACGACAATGTTGCACCTCTAGTGCTGCTTCTCGTGGGCTTTCCTC
CTTTGCTGGGCGACGAACTCGAACAGGCTACCATCGAAGCAACGGCGAACAGCTTCTCTG
GAGACGAAGCCCTCCTCGTCCTTGGCAAGCACGTACAACAGTATCCACTCTCCCTTGCTC
ACTAACCTGAACACGCATCAGTTCACATCTAAAAATAAGAAGAATAAAAAGAGTGGAACA
GCGTCTTCAGTTGAGGAATCTTTTGCCTCCGTTTAAGGAGAAAATAGCGAGTGCAGATGG
AACAGAAATGGGAGTTCCTAAGTGCTCACCATCCAAAGAAATCGTACTGCAGCCGGTTGC
CTTCAGTCATCCTCCAGATGTCGCCGAAGCTGAGCTTGTCCGGCGCCGTGCGGGCATACT
TGCTGAAGATGCTCTCGAAATTTACCGGCATGAACCTATATTTCTTTCACAGTCGTAATT
AACGTACAATTCCTCTTTTAGAACTGAAATATGGTGCAACAACGTTTTGAACTACTCCCT
CCGTCCCAAAATTCTTGTCTTAAATTTATCTAGATTTGAATGTATCTAAATACTAAAACG
TGACTAGATACATATCTAATTAAATCTAAGACAAAAAATTTGGGACTGAGGGAGTACTAG
TAAGCAAGTTTGGAGTGTGGGTTAATCACCTTCCCTCCGTGTCGTAAGTGGAGGAGTCGC
TGCCATGCTTATCCCTGTGGATGTTCTTGATGTGTATGGGGAACAAGGGAGATGGTATCC
AGCTCTGTGTACACCAAATCATGAAAAGCAAAGATGAATAAGAGGTCGGTGAAATTTTTA
AAGAACAAAAATGATGCCCGATCTGTAAACTTTTATAAGATGTTTTAGGCCCTTTGTACT
TACAGGTAGAGTTGGGAAGCTCAGACCGATATTTATGCCAATTGCCGCTATAAAACACAG
GACCATGTTGAAGCCCAGCGACCGCATTCCTAGAATTCGTGCAGACCTCCATAAGCTACA
CATATCCAGTTAAACCATCAACGGGTAAGTGCACATGGTGATGGTACGCATGCGTCGTTA
CCTCTGTAAGTCTCCCAGGGATAAACGATGCCGTCGCCGTCCAGGTCGAAGAAGGACACA
TGCTGCTGCAGCACGCTCTTGTGCCCGTGCTCGTGCCCGTCCCCGCTCTCTCCTTCAGGA
TGGTACACATCGGGCACGACCAGAGCTCGAGCCAAGTCTGCATCACATGGATCCATGCCC
TGTTGGTTATGCTTTCTGTCTTGCTGGTGAAACCAGTGCAGAACGCACGTACGGACGGAA
GAAACGGGGCAGGCACTCACAGGGTTTTGGAACGTGGGTCTCCAGGTCTGCCCGGACCGG
CCGCTCGGCCGTCACCGGCGCGGCCTCCGCCACCGTCGACATTGCATCGCTGGGCGCCTT
GGCTTCCTCCGCCATGACCCACTCTGCGCGTGCGTACCACACTTTGCTGCTCAATCTCGC
GAGTCGAGATCGAAGGTGGCAAATCCTCCGCGCGGCCTGCACTTCTTGTATAGACGCCAA
GGAAGGAGAAGCACCCACGGTGCGAGCGTGTGAAGGGAGCGAGAAGTGAAAGGTGTGTAC
GATTGTCATAGCAGTGAGGTGTCACCTTATGATTTGGCACCGAGAACCTTCCCCGTGGCG
GCTTGTGCAGCGAGATCGCTCTCAGGATCCGTTGTCCGTCCATGTCATATCATTGTCCAT
TGAACCATACGGTCCCATCTCCGTCGTGCTGTGCCACATATAGTTTGCGGTTAATCTGCT
TGATACGGAAACGTTAAGCGCCTCTGGTTTTCGCCCGCGTGCGCTTTGTAAACATTTGTG
TTTTCTTTTTCGGAACTAGGACATGACCTGTGCGTTGCAACGGGACAAAGAAAGATTACT
TCCTCTGTCTCATAATATAAAAATGGGATGAAGTAGAATCACGCACTCTTTCTCATTCCT
TCCTCTAGCAGATCCTTATCTATGATTTTTGTGGACATGTAGAAATAGAACATTAGGTCA
AGTGGTGTATATTAGTCTACTACACTTATTTTAGCTGCCAGTTTCTTGGAAGATTATTGA
AAAAAAGGTTTTCTTACGAATGGCAATTTTATTTTGATCTTATTTAGAATTTATAAGATA
GAGTTGTCATATTTGTTTGCATGTTTGCCTATTAAAATTATATTTATAATGGAGCGAAAT
ATCTTAGTTATCTAAACATCTTAATAACCTCGACGAGCCAAAACAATCACGTAGATATTT
TAGCTTACAAGCGATTTTGTTATATCTGATATTCATTAAAGACAATGTATCCACCGAACA
GGCTTCTTCCCACGGGCTCTGGGCTCCCTCCAGCCATCTCGGCTGACTCCCTTTCCGATG
CGACGACGACAGCTTCGTCCCGTCGGCATAGGTGGCCATATCTCTCTCCCTTTCCGATGT
GACGACGACCATGGGTTGCGCCTAGCAGCAGCTTCGTCCGCCGGCGACATCCCTTTGCTG
TCCGCGCCGGACTGCCCCCGCCTCTGGCCGGGAGCGACATATTTTTGACTTCATTTGCCT
TTCGCATTTGCCTTTTGCATCGGACAGGCCTCCCTCTTCCGGTTTCCTTCTCTTCCTTGT
ACAATTCCCCTTCCTTCTCGTTATGTGTTTGTTGGGCTAGTTGTTGATATTACAGATAAT
TTTCGTAGGTATATAAATTGGTAGGATTTCATGTAAGTAATCGAGGTGGGATTATTGTGA
GGACGCGTGCGAAACTGGGTAAGGTAAAAAATGTGTTTTTTAACTTATAAAAGGAATGTG
GGTTGATTGTAAGAAACAGAGGGGCCTTTTTGCAAAAACGTCGATGACGTACGGCAGAAG
CGATTGGCGATTTATTATTAGGGAGAGATTAGATGTGCTTTTGTAAATGGAAGTTTTTCT
GGTTCTTTGTTACTCTTTGTCTATCTTTTTTTTTCCTTTTCTTTGAAACGGGACGTTTTA
TTACTTAAAAGATTTAAGCATTACATCCGGCCTCTGCATAGTTAAAATGCACACAGACAA
ACAATGTCCTCTCCCTTTAAAACGAAAAATAAAAAGGCGGAATACAATGAAACATGTAGA
ATCTGTATAATGCCTAAAGCGGAGGGGGGCGCAGTCCTAAGATCATGCCGCCACCCATGT
TGGATAAAAGTATCCCTCGTCGTATCCTCCAATCATGTACACACCTCCGTAAACAGGTCT
CGATTCTCCACCGTTGTAGAGAGGACCATAAACGAAGAGTCCCAATACATCTGTAGATAA
CCTGCATAAGAGAATTACTTTTATCGTTAAAAACATTATCATTTCTACATAGCCAAAGCG
ACCAAATAACGGCAAGCGCTCCCACCCTGAGAAGAGTTCTAAACCTGTGATCAACCTCAT
GTAGCCAATTACCAAATACATTAGAAAAGTTTGAAGGATACAAGCCAGAAGCTATTTGGA
TGACTGACCATATAGAATGAGCAAATTTGCAATGGAAGAATAAATGTTTTATTGTCTCAT
CATGGTGACAAAAAACACACTGCGGATTTCCATGCCAATTCCTCTTCATAAGATTATCCT
TAGTAAGAATGACTCCGCCACAAAGATAGCATGCAAAGATTTTATTCTTAAGTGGTATCT
TCATCTTCCAGATCTTCTTGTTATTATCAACTAGCACATCAAGTTGGATTAACACTTTAT
ACATAGACTCCACCGAGAATTGACCATTCTCATGTAGGATCCATCAAAAAACATCGGACC
CATATGCCAATTGACTCTCTGTCTATCTATATCTAGTACTCATTGTGTAAACAAATATAA
GACGTTTTAGTTCATTAATTTGTTGATCTAAAACGTCTTGTATTTTTATAGCGGGAGTAG
AGTGTGAATTGCAAAAAAGCACCACATTTGGGGCATCGATTGCAGAGAACCACGAGGTGA
CTAATCATTTGCAAAAAACATCGTGTATTCAGTAAACATTTTGCAGTATGCACTGATTGG
ACGATTTGCTGATTTTGACCATTTTTTCGACAGTTGGGGCCCGTTTTCACCCTACGTGGC
CTAACGGCTGGGCAACGGCGTCGTCAGGTGGAAATCACTTGGCCGCCTCTTGTCGGACAG
ACCGACCGACCGCGTTACGCCACTCCACACTCCTCTCCCTCGGGCTCCCTTAATGGCGAA
ACCTGGCGACGCCCGCGGCGGAGGCACTTCCGCTGGCGATGCTCCAGGCGGTGGTGATGG
AGATCCACCAGAGTTCTGCAGGATCTCGAATCCTTCGGCGGTGTGGTGTAAGACATCCAT
CCTCTCTCCCTCCATTCTCTTTTCCCCGATTTGATTTCTAGGGCTAGGAATTAATTGTTC
AAGAGTTGTTGGTATTAGGTTTACTGAATGTTTAACACTGGTTTTAACTAAATATAGGTT
GGATGATGAAGAATGGGAAGCGAGGTTCCATTTCTTGGACAGAGATAATTTGGAAAGAAC
AATTTTCTTATGTGACATAACCCATTGGAATCTGATTGCACTAATAGAGATAACATGTTG
TAGCTCAAGAGATTTCATGTATTATGTCAGAGATCGAGGAGTTGGGGTGTCACGAATGGA
AGAATTAACTGATGATGACAAGGTGGAAGAAATGTTGGATGACAGAACTAGTAAAGAAAA
TAATGTGGTTAACATTACAGTTATGAGAAGTGATGCACCAACAACAGCTGACATGAACAT
TCATCATCTTTATGAAGAGCAGGTCCCTTTGTCTGAATTTGGTGTACCACTTTTCTATGA
GGTAGATACTAGAGGAGTTCTTTTCCCTAGTCCAGTGAAGCCCCAACCACAGCCGGTCCA
GGTCACGAACACCCAGGAGAGTTCATGTTTGTTGAAGCTTAAGGGTCCAAGTGAACAGAG
TTTGCATTGGACTATGGATCTGAGAGGCATGAGTACTTCATGGAGATAGGCCAAGAGCAA
GAGAAGATTGAGCAGATGATGGAGAAGAAGAGGAATGAAGAGATTCAGAACTTCAAGACC
AATCAGAAACAAAAATAGAAGTACAAGGCAGCAAAAAAGAAAAACTCCACATGTGCTTGC
TGAAGAATTAACTAACAGTGATAGTGAGAATGAAATTTTAGCAGATGATGACATAATAGC
TAGGCTCGAGGCAATGAAGAGGCAAGGAGTGGACCCTCTTAATCACTATGAAGGAGACAC
TAATGTAGAAGAGCTTTATGAACTAGATGAGGAGGAGGGGGAGGATGAAGCATGAGAGAA
GGAGTCAGGACAGGAGGAGCAAGCAGAAGAGGGCAGGAGAGGAGGAAGCATTGTAGGAGG
AAGTAGTGCAGGAGGAAGCAACAACACAGGAGGAAGTCAGAAGAAGGGTCCAACAACCAG
ATCACATGGATGTGTGGATCAAATCATAGAGAAAGATTGGATACCTTCATCTGATGAGGA
GAGCAACCCATGTGACTTATGTCGGGATGATAATGATGGTGCTCAACTTCCAACATTTAG
GCAACCAAATGGTAGAATGAGTAGGGCCAGAAAGCAGAAGACTAGGATTTGGTATGATGA
GAATAGGGAGAACCCACAAGAACAATTCATGGAGAATATTTGTTTCCTAGATGTCCAACA
ATTCAGGAGGGCACTTCTTAGATGTCACAACTCACAAAATAGGAACTACTCTTTTCATAA
AAATTGCTCAGATAGAGTCATTGTAGTTTGTAGTACAGAAGATTGTCCTTTTTTCATTGT
TGATTCTCAAATTGCACATGAGAGAACATTTTGCATAAAGAAGATGAACTTGTACCACAA
TTGTGCTACCATTGGACCCTGTGCCAGGGCGTGGTCTATGGCAAAAGACTGGGACCCCTG
ACATAGAGCCACCTGTTTTAAAACACAAGCTAGGAAAGAAGCTGACAAAGAGGAGAAGGA
ATCAGTATGAGAAGCCAGCTCCCAAGGACACTTCTAGCATGACATCAATCACTTGTAGTA
ATTGCAATTTGAGTGGGCATAGGCACACTAGCTGCCACAAAAATCTTAAGCCAGCCCTTG
CAATGAGAAGGAACTAACACGAGGTAAATTTTCCAAAGACCCAAAACATGAGTTTATGCT
AACATTTCTTATACTATGTTCTAATCTTTGTATGTTGTGACTACAGGAAAGCAGAAGAGT
TGATGCATCAGTCTCAAGGCCATCTCCATCAGCTCCAGCACCATCCAGGGCAAGAAGTAC
AACTCCACCAGCAACTAGGGCAGCTCCATCAGCTCCTGCTACAACCAGGAGAGCAAGTAC
TTATACTGCTCCCGCTACTTCTAGGCCAACTCCATCTACTGTTGCTGCTTCTAGGCCAAC
TGCATCTACTGCTGCTGCTTCTACTCGAGGATCATCTATTGCTGCTGCTTCTAGGCCAAC
CGCATCTACTGCTACTACTTCTACTCCAGGATCATCTAGTGCTGCTGCTCAGCAATGGGC
AAAGAAAAGCTTCATACGACAAAGAGCTTTAGGTACTGGAAGGCTAAGAAAACCATCTTA
TAAGATGTCTGAGTGGTTCAATTGTTCTCTGGACAACAAGAAGAAGTAATTCATGATGGT
GATGTTGAAAACAACTTTGAGTTTGTGATGTTCAAAACAACTTTGAGTTTGTGTTGTTGA
TACTAGTTTAATTCAGCCTATTTTGGCTAGTTTGTGATGGCACTATGTGAGTTACCTAAT
TATTGCAGATGATCAAGACTATGATGATGATTTATGTTGTTTATGATTCTAGTTATAATG
ATGATGATGATGTCATTTAGACTTTCCAGCGCAAATTTCATCACACACAAACAATAAAAT
AACACTACAAGGAGACCTTAGTTTAACAGATTCGAAGTTAACACATTACAAGCCATAGTT
CAATGCTACAAAAGTAACCTAGTTCAACACATTACAAGGAGTACTTCATTACAAATTTAA
CAACTAAAGATAATGAATCACATGGTCATATGACAGCACAAATTATTCTTCATCACAAAT
ACCCTTGATATCCTTCAGCTTCCTCTTGTTATTTTCACCTGCTTTCTTCAGGTCAGTAAT
GCAACACTCCATAACACTCTTCTCAATGCTCCACTTCTCCTTCTCTTTCATCAACTCAGC
AATGCAAACATCTAGCTTCTCCTTCTCTCTCTTCAGGTTAGCCCAACACCACTTCAGGGT
CCTGTTATCAGTGCTCATATTTTCCTTATCTTTAATATGATTGTGCTTCATATTTCTAAT
GCAATTTTCTTGAGCAACATGAATGAACTTCAACTGGTCAAAAACTACCTTCAGTTTGTT
GATCTTAGCATCCTTTTCCATGCTTCTCTCACCATCATTTTTGTGATTTACCTCTGGCCT
CTTAGAATCATTGTGGCGATTTACCTGTGGGAGATTATCTTGGGAATCCAAGAGGTTGTT
CACATCTTAAACAAGCTTGTCATAAGTCTCCTGCAACTCATTTTGTTGCTCTATAATATT
GTACAAAGCAGCTAAATGTTCTAGGCATGCAATCCTATTTTCATGCTTGCTATCCCTCAT
ACATAAACCGCAATTTATGGAGAGCATTCTGCATATGATCTGGCCACTCCTCATCTACCC
ACTGCACTAATACACAATTCTTAACTCCCTTCAATACAAAATAAATAGTTCAAACAAGCT
GTCACAGGTTAAAGATTCGGTTAAGTTAAAGTTACAGTTAAGTTAAAGAAAAAAATTAAG
GTGCAGATTCAGTTAGATCAAGTCAACTAAACAACAGATGATCTGAGCATCTTCATTCTT
AGAATAAACAACAATTATTGTTGGCATTTCCATTTCATCCCTAAAATGAACAATGAACAG
TAACTAGGAACAATGAACAGATTAGTGGTGATCATTGTAATGATGATAGTGGGCTTATTG
TTNNNNNNNNNNNNNCACTATCTTATTGCAATGCTTCATCTTTGGACTTTAACACTTCGA
GCACTCTATGTTTCACATGGTTGTGTTAATAGTCCATGCATATCATGTAGAAATTGCTTG
ACCAAATCTCATGATGATATGCTTGCTATATCTTGTTGCCATGATAAAATTTATATATCT
CCGCGAGTTGTTATGTTAACAATTTAGAGGAAATCCATCACTCCATGGAAAAAGATGTGG
CCTTGAATGATGCTTCAAGGGATCCTACATCATCGTCTATTGTTTCTCACTTTTGCCTTA
TGGCTAAGTCTTCAAAGATATCTCCTACATTAAATCCCAATATATCTCATGATGATGATG
TTGATGATAATATGGGTGAGGATAATGATGAAGATAGCGATAATATTACTTCCTTCAAAA
TTAAGGGGGAAATGATTTTTAAAGATCTTCATAAGAATAAAATTTCTCGTTCCAACTTCA
TGGAAATCATGTCTATTTCCATTGAGGGCAAGAAATATATTGAGNNNNNNNNNNNNNNNN
NNGAGGAGCATGAGGCCACCATTGAGGAAATGGAAGGTCATGAGCATGACTACACTAATG
AGATAGCAAAGCTATCCCAAGCTCTTGAAAATTAACAAACCACCAAGGAATCTCTTGAGG
AGACATTTGCTTTAGAATTATCAGTTGCACATGCTAAACTCTTTGAGAACTTTGAGCACC
TCGAAAATGGCTCAAGGGCCATTAAGAGTTCGCTCATCAAACTTACCGAGTATCATGCTC
AACTTGAAGCTTCATATGTAAAAGAACATGCCAAATTGCCTTCTCCTCTTGTTGTTAATA
ATGATGATTGTGCTACTAACTCTATTTCTTGTGAAGCATCCATATTAAAGCAGAATGTTG
AGTTGACAGCTCAACTTGAGTTGCTATCTAGCAATTATGGGAAATTGGAAGAAAGTCATG
TA