Map Locations of contig_41525 (8310 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_41525

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57216 1 1464 bp AK252246.1 Available Available None
MLOC_57217 3 4866 bp MLOC_57217.1 Available Available LOC_Os03g63670.2, FRAME:-3, EVALUE:0.0, 13103.m07060 protein expressed protein





CDS Structure of MLOC_57216






CDS Structure of MLOC_57217






Contig Sequence (8310 bp)

>contig_41525 8310 assembly3_WGSMorex_rbca.fasta
CGACGCGGTCAGCCCGGTGGCATTTTGCGGGCCTGTTATGCGGGACGGCTTGGCGGCCCA
GCGGGATATCCCGCCCCGCTTGCAACCTTAGTCAGCAGCACACAAGAAAATCAGATGGGA
GGGGCAAGCTTGTTGCTCTGTCTTACTCTATATCAGTGGGGAAACATGCTTACTTAATTA
CTCGATCCATACCTAAATAATTATAGTTGAAGAGAACTAAACTAGTTCTCCCCAACTACT
CCCTCCGTTCCTAAATATAAGACCTTTTAAAAATTCACTGTAGACTAGATACGATGCAAA
ATGAATGAATCTATAGTCTAAAATATGACTACATTCATTTGTATGTAGTTCATAATAAAA
TCTCTAAAAGGTATTATATTTAGGATCGAAGGGAGTACAATTGTTTGCATGAGGAACAGA
GTCCCTGGTGAGCATGTGTGTAATTACTTTACTGTAACAGAGACAAGCCCAGCACAAGTG
GATGGACTGCTAGACACAAACAGGAATGGACAAGATTTCAGAGGGGAGACAAGGATTTAA
CCATTTAACAGCTGCAACACTGGGAAGGATGATGATCTACTAACTAGGCACACCTTAAAG
ACAACAACACAGCAAATTATCTTCTTTTAACAGCTGGGCTCCAAATTTTACAAACAGAGG
GAATGTCGATAATGATATGATATCAACTTACATCCGACAACAGGGAAAAAACGTCCAACA
AAAATTGAAGCCCAACAATAACAAAGATTTCAACAAACACCCAGGCTTAGGATATCCAAT
CCGAAGATACAAAAAAAAAAACTGACAATTAGTACCTACCAACCGTGACAAAGGGAAAGG
TCCAACAGATGATTGTTAGGATCGACCCCTACCAAAATTCCTAATCTGCCTAGATGTAGT
TGTAGATCCAAACAAACTACTCGGCGCCATGACACAAACATGTGCCTAACAGAAGATGAG
AATTGATGATAGTCAACATCTCTAGGAAACCAGGTACTGGATAATCAACTTCAATTGTGT
ACTCCCTCCGTTTCTAAGTACAAGTCTTTAGAGATTTCAATACAAACTACATACCGATGT
ATATAGACATGTTTTAGTTTCACTCATTTTGCTCCGTATCTAGTCCCTTATTGGAATCTC
TAAAAAGACTTATATAGTTAGGACCGGGGGAGTATTTTGCGTGCTCCACTTCCACATACC
CGGACTAACCATAACTAGGTTTCTTGAGATCAGATGATCAGACCTAAGAGAACCTCTTTT
TTTAATATCTATATAGCGTCACCGAGAGCGAGTTCATCAAGTGCTAGTAGAATTTTCACT
GACATGACTGGAAGTCAGATTTATTTTACGTACATAGCTGGCTTATCAAACATATCAAGG
AATGTAAGCTGAATAGCATGAACCAAAGCAAAACTCCAACAGAACTGTCCAAAACTTAAC
ACATGAAAGATGTCTATAATAATCTAATGAAGGAGATTGCTAAACATATAGTCTGTGTTT
TCAGTCAGTTAACTGGAACTGGCCATTACCCCAATTTTTTTACTGGAACCCAGAAGCACC
ATTAGAATTGCTGGGATATCATCATGCAGGCAAGATTGAACTAGGTACTCATGATCATTC
AATGTACAGATATCAGATGTTCCAATATTTCTGTAAACTGAAAAGGATCTAGAACCTACC
CGTCTTAAAAAGTGCAATTCTTGACTAACCATAACTGTGCTCTTTTAAAGGAAGATTAGA
TATAATAGTATATTTCTCTTGTTTAAAGCTAAGAAGAAGTAGAGAATCACATATTTTTGT
GAAAGAGATGATTATCTACATAAGCCACAGGGCAAGAATCAATGTCAAGAACAAATAAGT
TTACTGGACCAACCTCACACCTAGCGTACCAGTGGTTTCCATTGCACATAAAACCATTTC
CTTAAATGCTAGAATCCACCGCTCATGTCTGAAAGTCAGATCTATGTTAGCAAGCTGGCT
TTATTAAACTATATCAAGGAATGTAAGTTGACATGCATGAACCAAAGCCAAACTCTATCA
GAATGGTCCAGAACTTCATAAACACACAAAAGCAAGCTTGAATGAAAGATGTCTAATAAT
AATATAATACAGAAAAGTGCTGAACGTATATATGCCTTATGAGTCAGTTAACTGATGTTG
GCCATTACAGCGGAAGATAATGATTCCTGAAATCCAGAAGCACCATGAAAATTGCACCAT
CATGCATGCAAGATTGGATTAGGTACTCATGGTCATTTGATGTACAGAGATAATTAGACA
TTACAACATTCCCGTGAACCAAAAGGATATCAAACCTGCTTGCCGCCTTCAAACAAAAAT
GGAATTCTTGTTCTATGTCAAGGGAAAAACTAGAGAGCTTCCCTGATTTGGAAGGTCTTC
AAAATATTTCTAGCCTTATCGTACTCGTTCAGCGCCACCAATATGTTCTTCAAACGACGA
GCCAGCCCACGTATCTCTTCTTCACTAACGCCTGAAATGTGTCTACTCTTGAGCTTGTTT
GATAATTCCAACACGAAATCCGTGAAAGGCTGCAGCTTCTTGTTTGGTGAAGACCAGACT
CCTGAAAGTGATGCAGCTACCCGTTCGGCCCTTGTGATTGCATCATGGACTTCCAGAATG
ATACTTTTCATATGAGGAAGAACCTTTCCTATCAATAGTTCTTCTACAGCAAGTCTCTCC
AGGGCATCTCCTGCAAGGACCTTTTTCCACAAACACACATTTTTAAGCAGCCGTGTGGCC
ACTCCGAATCTGTATGCAGCATACTCGGCAGCACCTGGCACAGCCCTTGTCAGCATTGAT
CCCCAAGCTGGTACTGACACGTCAGCAATTGCCTCAGTCAGACGACTACACACCGTCGCC
AGCAGTTGATGCAAAGCCTTGCTTGTTAGCGGCACATAGTTAATCACCATAAAAGTTGCA
TCTACAGCATGTTGTGTTCTTTGGGTGCTCAAAATGTCCCAGCAGTGCTTAATACGGTGG
TGCAGGACAGGAAGGGCCACCTTTTCCGCTAGAACTTGAATGAGGTTCAGATCTAGATCA
TTAGGGTCGGCACTATCTTCATCTTGCACTCCATAACCCACAAGAACGTTAGTCCACTGC
ATGTCAAAGAAACTAGTTGTTTCATGTAGAGGATCCCAATTCAGAAGCTCCAGCCTCACA
TACGGGGTAAACACAGATGGCGCACTTAGTGACACATGAGCATCTCGGTAGGCCAAAGGA
TACTGTGTTTTCCAGCCTTCAAACTTGTCCTTGACAATTGTAAGGCTCGAGTATTCCTCT
GCAGCATCACCGAATACAGCATCAGCAGTCTTGAGCAACTCATCACGGCTGGACAGATAA
GCACTGGTGTCGGTGTCACTCTCATCAGTGCTTAGCTCACCTTCAATGTGCTCAGTAACA
CTCTTTCGTGCAGAAGATAATCTTTTGGATTCAGAACGAGCTTTTCTTCGCCTTCTGTTC
TCTTCCCTGCGCTTAAGATCCATACGCTTCTGGAGATTGATATCTCTGCCAAACTCATCC
AGCTCCGGTGGTAGATTAGAGCTTTCCCTGGCAGCAGCTGCTGCTGCTTGTGCAGCATGA
GTTGCGGCAGACAGGTTAGCTGAGCTCGGTCCTTTGCTAAGAACAGATATTGCTGCACTC
ACTGCAGCTTCGATCACAGCTGATTCATCAGCAAAGTCGGCAGCCCGCCTCTCTGAAACA
GCCAGTGCCCGATTTTCATGCAATTTCTGCATGTGCTCCTCCAGCTCCTCTATGAAGAAT
GCCTTGTCATTCAAGAAATCACACATAACAGAAATATAGTTTCGGAGCTCCTGCATGTAC
ACAAACTTCTTCTCTGCATCCTGCAAACCACTCTCCAGGCTAGATATCTCTGAAAGGGCT
TCGTTAAGATGTGTGTCGGTCCTGGCTAAAGAATCAACTGTTGTCTTGTGGGTTTCCCTA
AGCTTTCTGATGTTCTCCTGCAGGGCTTTGCCTGCCACATCAGCTTGCTGAGAGATGGAC
AAGAACTCTGCACTACCCGATGCAAAAACAGATGCCCCAGGCACAACCCCGCTAAAGGAG
GGCTGATAATGAGGACCCCCAGATGGCTGCGGCTGAACCTGCTGCCTGGCAGCCGAAACA
CCGTTGGTTGCTCTCTGATGAGAAGAAGAATCGTCCATCCTATTACCAAGCGCCTTTTTG
ACCTGCGCCTCCTCCCATTTCCTTTCTTCCTCCTCCTCATCATCAACCTCATCATCCTCA
ACCTCCATAAACCGATCTTTCATAACCCCCAAACTGGCAGCAGGGCCCCTGTTATTGATC
CCCTGAAACACTCCTTTTGAGCTCCTCTGGCCATCACTCTGCTTCTCCGAGTACATGGCA
ATCCTACCCTCTATCTCATTGTCGTCTTCATCACTGGAGCCGCCAGCCGCACCCTTCCTG
CTGCTGAGCACACCGCCACCATCAAGGGAGATGAAATCGGGTGCCGCATGCCTCGGCTGC
TGCAGCTGCTGCCGCTTTGCCCGGATGGCTTCGATCGTCGCCTTATCAGGTATCAGCGGC
CCTTTCTCCTCGCCGTCTCCATCATCCTCCGCCTCCTCTTCAGAATCACCATCTTGAACC
TCGTTCGGCAACGGTCTCCGCGGCCCGATGCTGGCCTGGGCCATAGGTTTCACCAGACCC
TTGAGAACAACCACTGGCTCCGCGGGAACTGCTTTACCGGCAGTAGTGGGAGCAGCCGAG
GAGCTGGCCGCAGCTCCGGCAATCCGCTGATGCCGGGGCTCGGCCGCCAGAGGAGGGGGA
GGAGGGGGCGCCGGAGCGCGCATGAGGCTGCCAGGGAGCGGGCGCGCGTTCTTCTGGAGC
TCACGGAGGCGCTCGGGGGTGTACTCGCCAGCATGGCTCTGGAAGTTGGACGGCTTGGGC
ACGGGAGCAACCACGGCCGGCGAGCTCCTGACCCGGTCCCTGGCGGGCGTGACGCGGTGG
AGGGCAGCCGCGGCGGGCGAGGCCGTGCGCGCCTGGCTGACCGAGGCGGACGGGCGGCGG
GTCCGCTGCTGCGCGAAGGGCCCCTCCTCGGCGTCGTCCTCGTCATCCTCCTCGTCGGCG
AAGCTGAGGCGGCTCGACCTGGGCTTGGGAGGCGCGGGCGGGGGCTGGGCCTTGGAGGAG
GGCCTGCTCGCGGGTCCGGCGTCCTCCGCCTTGCCCCCGTCGTCGTCGTCCGTGCGGCGC
CGGAAGTTCTTGCGGTGGCTGCTCATCCCGGCAGCTCGGCTCGGACCCGCGAGGTGGAAC
CAGGCAGGTCCACGGAACCGGGGTCAGGCGGGGGGAGAAGGCTTCGACTTGAAGTTCGGT
AGCTAGGCTGAAGGCGCGGGGATCTCACCGGCGGTGGGTGGGCGGCGGCTAGGGTTCCGG
CGAGGCGAGGCGAGGAGATCCGGGTGCGAGAGAAGAGATAGAGAGGCGGCGTGTGGAAGA
AAAACCAAAGTCCGGACCCGGTAAGGAACCGCCTGCTCGTCGTGCTGGGCCTTCTCTCAG
ATTCGGCCTTCTACTGGCCCAGTTCACAGCCCATATAGTAGGCTCAGCTCAGTTGAGCTG
AGCCCAGGCCCGGCCAGAGCGTCGTCATTCTCATTCTTCTCCCCCACTTGGCCGCGAAAA
CCCTAGGAGAGCTAATCCCCCCCATGGCGACGGCGACGGCGACGGCGAGGCTGCGATCCG
CGTCGGCGTTCTCCCTCCGCGGGATCCTCCTCCGCCGCTCCTCCGCGGCCGCCTCCGCGC
CCCCGCGCGCCGTCTCAGGTTGCTCCCCACCTTCTCCCTCCATCCCTCCCCCCGTGGTCG
TCCCCGGTGTAACATTGGCTAGATTTGATCCGCGTGGTGCCGTGTAGCTTCGATCTGGGA
CGATTTGGTGAGGCGTCAGATTCATTCTGCCGCGTGGTGGTCGCTCTCCTAGTTCGATTA
CTTGTTACGACTAGTGATTCTCACCAGTGGGCGCTGAGCTGCTTGTGTCATCCGGCTGAT
TGGTTGATGAAGAATTATTGGTTACATTGTCAACGCGTGCACATGTGAGGTCTGAAATGG
TTGATCCCCCAACATTGGTGTCGTTCTGCTTAAGCTCATTTGGTGCTCCTACCTTCGTAA
GGAGATTTGTGATCCACTAGTATTCTACTATTCTTTACAAATTGTGCGCACGAGCAGAAC
CTCCTATTTGTTCGTGTCGTGCCATAGTGTTTTCACAAAATCAGAGGGTAAAAAAACAGC
ACCATTTGTATGTGAATGCCGCAGTTATGTGTCTGAATGTGCCCCGAATCGTGATGTATG
GCTAACGTGCTGTTTTCCCTTTCACTGGTCTATCATCATAACATGTATGGCTTTGTATTT
CTGTGTCCTGAGGAAATATGAATGAGGGTTGCACAACAGATGTTACGCTTCTGCTGTATG
GTAATAGATTTCGTTGTTAGGTTAGGTAGTAGGAGCACTGTATCTCAACTGCTGATGTTA
TCTGACTGATTGCCGCATTATGTGGCACCGTTCTGTGTATAACCTGAGAATTTGTTAGGT
ACTCCCTCCTTATCAAAATATAAGATGTTTTTATAGGCGTTTAGCCTACAAAAATGTCTT
ATATTTTGGTACAGAGGTAGTAGCAAAATTGTTAAGGACTGTCCATTGCCATTCGTTGTA
GATAGAGTTGCACTTTTTTACATTGTGTTGTCTTTCTGTAGAGTAATGCTCCACTTCCAC
ATATTTTTTGTTATCTTCCAGTACTATTCCAAATGGAGGCCCTTATCAGCAGCATCTCTT
GTCTTGTTTCATTATTACATTAGTTGCATTTTGGCAAACACAGCTAGTAAATATTCTACT
GTTTTGAAGTGTGTGTTTCCTTGTTGGAATGTGTGCATGAATGTCTTGAAATTCCGGCAT
GTGCCATTTCCCCTTATGCGTTGCGGTGAAATGTGTAGCGTCCTGAATTGAAGATAAAAA
GTGTGTAGCTATGAAATCGACATGTTTAATGTGTCAACGTGCATCCGTTGGATAACCAAA
GTAAATCTTGGTACTCTCTTGCATATATCGCTGGAACCATGCGTAAATAGCTCATTGCCC
TTTGCTTTGCCAGATTTTCAGGTTCCTGGATCTGCAACATGGAGGCATTTCTCAACATGC
AAGCCTAATCCTCTTGCAAAAGAGGATAGCTTTGGCTCAATGGGTTCTCTGTACAGCCAG
ACAAGATGGGCTTCTCAATCCACTGCTGTCAAAGAAACTGACCCCAGTGGCGGCAAGATA
AGCATTGGGCCCAAATCCAAGCAGATCAAGGAGGACGACAAGGATGATGGACTGGTTTAT
CAAGGACCAATATCATCAACCATCAAGAAAGTGAAGCTTCTGTCCCTGTCCACCTGCTGC
CTCTCCGTGTCGCTAGGCCCTGTGATTACATTCATGACCTCGCCCGACATGAATGTGATC
CTCAAGGGAGGAGTCGCATCCACCGTGATCTTCCTCAGCGCCACCACGACCGCAGCCCTG
CACTGGTTCGTGAGCCCGTACATCCACAAGCTGAGGTGGCGACAGGGTTCAGACAGCTTC
GAGGCAGAGATAATGTCGTGGCTGGCTACACCCCTCAAGAAGACGATCAAGTTTGCTGAC
ATCAGGCCTGCAGAGACTAACCGGCCTTTCGTCACCTTCAGGGCCGAAGGGAACTTCTAC
TTCGTCGACGCTGATCACTTCTCCAACAAGGCCTTGCTGGAGAGGCTCACGCCTAAGCTC
CCTAACGAGTCTGCGTTCAAGAACTTGTGATGAAGCTACTGTTTTGACCGCATTTGTGCT
CTTGAACCTGGCTGAGCTATCCGGTCCTTTTTTTCTGTAGCTAATACTTGTGAGAATATG
TAGTATACGGTATCGCTGTTATTTTATTCCATGCGAAGATTTGCGAATCGCTGGCTTGGA
ATATTTTTAACACCTGGATGGTTTTGAATAAGTAGAAGCAACATGCCCCTCTGTGTGATT
GACAGTTTAGAATCCCAGTGGTATCTCTGTTTGCGATTTCTCTTAAAGCTATGTAAAACA
TTGTTCCATTTGGTATCTGTTGTGCCTATAGATTCTCATGATCGATTAGCATGATTACCA
CAACTTTCTCTACTTGCATTTGAGTTTGATATCATGAGATTAAGCCCTTCATTGATGTAA
GATTGAGCCCTTCATCTCCACAGACTGATGTTAGATTGAACCCTTCATCTCTACAGATTC
ATTTATGATGTCTACTTCGTCTTGCAACTTTAGAAAAAAAGCTATCCAAAGCTATGTTAC
ACAGAAAAAAAAAAAAGCAACAGCCATCCT