Map Locations of contig_41518 (10623 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_41518

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57208 5 2121 bp MLOC_57208.1 Available Available LOC_Os06g36220.1, FRAME:-2, EVALUE:2e-82, 13106.m03740 protein OsFBX198 - F-box domain containing protein, expressed





CDS Structure of MLOC_57208






Contig Sequence (10623 bp)

>contig_41518 10623 assembly3_WGSMorex_rbca.fasta
TGGCGTGGCGTGCCCGCCGGGTGAGGTAGCGAGGACTGGATGCGATCAAGACCCTCGTGA
TGGTGGATGTAGAAGAGGCAGAGTCACACTCTTCGACATCCTGTAGGATGCACCAGTGCG
GGTGACGTGACGGCGTCATGATGAAGGTCGGCTCGTTCCAAAAAGGGTCTGTCATCGACG
TTACGTCGAGTGGCACCGTCTGGATTACGGGCTACGATGAGGAAAAGTAGGCCATGAAAG
ACACGATCGAAACTACCGCGACTCGCAGGCTGCCATGGCGTAGGAGGAGACACATCACGG
GCTGTGCGCAACAGCGACGGTCACAGGTGTAGGACGTGGTGGACCTGCGGCGAAAACATA
CGGGATCGCGCGCGTACGTAGGACGTGGTTTGGACATGGGACAGGACAGGCTTCGTCAAG
TCTCGACGTCCCGTACGTGGTGGGTGGTGGTGCCACCCAGCGTCACATGCGAGATCGCAT
CGGTCGGTGCTGCCACCCGTATGGATGGATACGGGAGGGATCTTCTTTGAGGCAGCCAGT
GTGCAGCCGTGCACCTGGCCACGGGACCGACCGATGGCCGACCTGCGAGCTGCTATACAG
GGTCCAACGGTCAGGATCTGAATGCGCGCAGGATAAGAAGAAAGCGAGGACTCATGGGCT
CATGGGCATGTATCCTGTGCGGACTCATGGGCTCCCTCGTGGGCGCTAGCATGCACATGA
TGTGTGATAGCTAGCGTGAATGCATGATGGTACATTCATTCAGTGTTGCTCGTACTTAGG
CCATGAACTATGGTGGCATTCACGTCTCCGGATGAATCACTCATGCTAAGACTGAGAAAT
TCTTCTGCAAGCTACGATTACCCGGTTTATTTTACGGACTCACAGAGCCCTACATAGTGA
GAAGCAACGAGTGAGTCGGTGCCTAAGAGCAACTCTAGCAGATTCGCTCTTTTTCCAGAC
GGATTTACGATAAAAAAAAAAGGACCGACCTGGTCCCCTAGAAACGGCCCGGTCCTTAAA
TTTTTTTACGGAGCACAGGCGTGGACCGCCTCGACCGCATCTTCTCTCCCGCGATCAAGC
ATCTACGAGCGACGAAAAAGGCGTGGTTCAAGGTGAAGGAGGCCATCGTCGCCGAAGATG
GCGCAGGTGGAGGCGTTGTTCAAGGAGTACCAGTTCACCCAATTCCTCTCCACCACCCTC
ATGGAATACCACCTTCACCTTGACCTCATGGAGCTCCTTCCCCTACCTCCGGCTCTCCTC
CCAGTCCCCTTGTTTCTCCTGTCGTATCCCTCAGTTAGCTACCAAATCCTCGTAATCCAG
TGTCATTCGGTGATTAGTGAAGGATAATGTTAACACGAAAGAGAATGCCAATTTGAAGCT
TCCTTTCACCAAGAATGCTATTTTACCACATTTACGAACGATCCAAATTGAACCATTCAA
ACACAACCTTCTGCAGAATAACATGCAGAGCCCCCTTTTCATTAGTTTGCCGAAGAATAT
AGCAATTTGTGTTTCAATCACATCTCTGCATTTTTCAAGAAATCAAATTGTTTTACCCTT
CAATTACTTATCTACTCATCATTTTGCTACATTGATATCATCCCTAGGAAATGGAATACT
TTTATTCCATGACATGCTAGGCCCACCCAGGATGCCAGGCGAGCTGCAGCATAGAATCTG
GATTGCTGACAGGCTGCAGCGCAGAGGGTGGCCTAATTGCGGTCTTTGTCAGCTTTGCAA
ACAGGAGCCGGAAACGGTGGCCCATATTATGTTCAGGTGTTGATTCACTATCAGGGTGTG
GAACTTCATTTTCGCTGGGTTGTCAATCTACGACCCTCTCTTGGGTCGACCTTGAGACGG
TCAACCAATGGTGGGTCTCGAGTGAGGAACAACTAGGCTACTTCAGAAAGGCGATCATTC
TCTGCAAATGCTCGTTTGTTGGGAGAGATGGAATGAAAGGAATGCTCGGGTCTTCCGAAA
CAAGGCTTCCCTGCCGTCGAGGGTGGCGGCTTTGATCAAGGATGAGGCTAAGATGTGGGT
AGTGGCTGAAGCGAGGTTTCTAAGACTATGTTTCTCCTCCTCTTCTTAATTAATGAGATG
AGGCAAAACTTTTGCCTCCGTTTCAAAAAGAAAAAAGTAATCCACGATTGACAACATAGC
ATGAAACCACCAGTTAACTAATGGAAATGGAAGTGTTGAACCGCTAATATAACTAATCTT
GCAGAACGGATCAAACACAATGAGAAACAAGCATGCTTAGAAAACTATATGTATTGCCAA
ACATGTGAAGGAAGAAACCAACGGATCACCACAAAATAACTAAAGTAGTACTCCTGGCGT
CATGAAAGTTTACTTGATACAACAGAACATGCACCATTTTACACAAGTTAAGCTAGATAT
ACACGTTGTTGAGACATAGAACTGGTACCATTTTACACCAGTTAAGCAAGAAAATACAGG
CTGCTGAAACATATACATAGATCATAGCCCTTCAATAGGTAAATCAGTTGAGGCCTGACA
CCGGGCGACATGGCAATATCACTACATCGACATTTGAATCTATTCAAATCGCATCTCAAC
GGGAGTCTGTCCTTCATATGAATGGAACAGGGACAAGCGCACAATCCAGGTAGACAAAAC
ACAGCAACCTCATGCTGCCAAGATTAATTCAGGGACATCTACTTCGGCTGCTGGAAACTG
AACCCTGCGTAAACCATAGAGGACACAATGAGCACATGAAAGTGCAGACTAAACCATGAG
AAGGTACGGTTGACAGCAATCAGCATTGACGTCAAACATATACTGCATAAGAAATTATTT
TGGAAGAGTGGGCCAACATACAACTTGATCTCACTATGCAGAAACTGGAAAGATGAGCTA
TTAAATGATCCATTTCAACTAAATAGTGAAAAACACCTCACATTGTTTATTTGCCTATTT
TCCTTTTTTGACTTGCTTTGGCCTCTCCCATTTTCCGAAAAATATGTCAGTTGCTTTGGC
CCAAATCACACTTTCAATAAAATATGTAATGTGGATATCATACAGCACTCTAGTAGACTT
TTTAACCAATCAATTTACCAGATAGTTTAACGTCCATCAGGTTTACTTGATTTTAGTGAC
ACATGCAGGTACATAAACATCAATAAATTGTAGTATTGGTAACTTACTGAAAGAACTCCA
GGAATCATGTTCGATGCTAATTTGCGCAGAAGTTACTCCATGAATGCCAAGGATGTCCAC
AATTTGACAAATCCATTCATCCTCCTTGCTACAATGGATTTCAACTACCTTGAGATGCTT
TGACACCAAGAAATATTCCGCTGGGTTGTAGCTTCCACTTGATCCAATGTCAAAATCCTG
TTGAAAACATATGATTTTACATAAATGAATCAGCTGTACATGTTAGATTCAGCGACAAAA
GCTATCATATATGAAAAACCATATACCTTGCGAGCTGGAAGTTGAAGGGTGAACTTTTCT
AGAATTGGTGTGTGCTGAAGAAAGTAAAGTAGTCCAGTGAAGTTTGCAGTCAAACACCAT
TCATTGAGCAACACTGTTTTTAGCTTGCTAAACACAGGGCACCATTTCAAGTCCTTTCTG
AAAATCTTAACAACGAAACAGAGAACTAAAAAAAATTAAAGTTATAACTTGAGAAGACAT
GATTCAACAACACTGAGTTGAAAAAGATTTCCTTAGTTCTTATTTCAAGTAATCAATTGT
GAGCAGATAGAGAGATACACAATACATATTTTACAAGTCTTTGATTGACTCAGGGATGCA
AAATGTTGGATGGCAATCAACACAGGGAGTTAAAAGAGCAAACATACCATAGAACATTCA
CTTATCAGCTCTAAATTTGTAGCACCCGCCAATCCTTGAAGAAGTACACAACAATCATCT
TCACATGACTCGTTACCACTATCCCTAAGGTAATTATAACAAGCGTAATTATCTGCACAA
TCTTCGCCAATCCTGATAAATGATGTTACCAGTGACGGGAGGCTCTCAAGGAACGGGGCC
CAGTCATGAGGGTCAGCTAGTTCAAAGGTAAGAAGACCTGGAGCAGAAAGGCAACTCCAT
GGTGTTTGCATGGAATAAAGATACGAATCTCTGATTTTCAGATGCCGTAAAGATTTGGGA
AAGATACCCAAAAGGTTGATAGAACAATCACCTATCTCTAGCAGCTCTAGTGCGTGACAG
CTGAGAAGATCTAGAGGGCTTTTGTCAAATACCAGATTATAAAGCTCTAGCACTGTCAAG
TGCTTGGAGATGACACTGCTGCTGGATAGATCCAAAGAAGAATGATGAAAACCCCAGTTT
AGAATTCGAAGCACCGACACTTGGCACGAGACAGCATACCGTACCCACGATTCAACGTCA
CGGTGTGCCTCGGCTTGTTTGCCTTTTTGATAGGGAATGATATCACATTGAAGGAGAGGT
GAGGTCCGGTCACGGTGCTCAAGCAGCTTATAAACAAAATTGTTGAAGGCCTTGGCGCTC
TCGAACTGAAAAGGATAGAAGCGCAGTGCTGGCACCGACTTCCAGAGGGCGCGCCAGCGG
CGAGCGAGCACGGACGTCCTCACGGCGTCCCGCGAGGGCAGGAACGACAGCAGCAGCTCG
AGCACATGTTCAGGGAGGTCCTCGAAGCAGTCCTTGCCGCCAGCAACGGCCACTTTCTTG
ATTTTACCGGGCTTGGCCCGTTCAGCCATTCCGTCGAACAGGTTGCTCGCACAGCAGCTA
CATCGGAGGCCATGGGCAGGGTGTGAGTGAGATCAGAGACGGCCAGGCGGAAGGGATGGA
GAAGAAGCGAAGGCTGACACCGCGTTAGCCTCACGTACCTCTAGTCGCCGTGCAGCAGAA
GGCCGTCAGTTGGTTCGCGCTGAAGATGTGGATCGCCTGTCCGAGGACGAACAGAAGGGA
GCTTTCGCCTATAGGCCTATCTGCTCGGTTGGAAGGCAACGGAATGCCAGTTTCTACTGC
GTCGCTGAATTCCCAGTCCCCACAAATTCCTCCATTAACGCGTCGAGCAACGGAGAGGAA
GACGAGACAGGGCTAGAAAGGGAAGACGAGACGCGTCTGCCGGAACACCAACGACGTAAA
TGAAAGAGAGAATTTCTTATTTAACCCTTTCTTAAAATTTGATTTCCTTTTTTAACCAAA
AAACCTTTTTCTTCCCAATTTGACGCACAAACTTTATTTTGTGTCTTATGTGACACTTTC
ATCTATTTTTCCATCAAGAGATGTTAACTTATATACATGCGTGTAATACAGGCACCTGTG
GCCACCAAATCTCGGCGTCTCGTGTTATTCTCGCCTAAATTAGTACCGGCTAGTTGATTG
CTATCTTATAGCCTATTTAAGCTACCGGCTATAAGAGCATCTCCAGCCGTTTGACCCAAG
GGGCCTGAAATAGCGCCGCCTAGGGGTGTGCTGACGAAAAAAACGACGTGGGAGGAGGGG
GGGGGGGGGGGGCTCGGTTTCCCAGCCCCCCTCCTCCAAAGGCACGCCCCAGCCGTCGCT
TTCGGCCCACTTTTGACGTAAATTTGCCTACTTTTGATGCAAAATTTGCCCATGTTCGAC
ATGTTTCGGCATGCTTCGGCACAAATTGAACAAGCAATAGCCTTTCAGTCGATGCCTCTG
CTTTGCCTTCAGTCGACCGACGCCGAGCCACCGCGCCTCGGCTTTGCATTGCTCACGAAC
ACGCCGACCAAGCGGCGAGGACCATGAGGTGCTCTTCATCCTGGACGTCGTCATCAGCTT
CCTCCTCCAGTAGCGCCGCGAACGCCTCCTCATCGTCGGAGTCCATCGCCCAGGCAAATC
GCCGAACACTAGCGGGTGTGGCGGACGCGCAACCGCGTACGTGACCGGAGCACCGGGAAA
ACTCACCAAGAAGCAGGGGGCGAAACCGCGCTGAACCCTACATTTGTCTACAAGGAGATG
GCCTTTTTAGCTGCGGTAGGTAGGTTGGCGACGCCAAAATCGAAACAATGATGAAAGGTG
TGGTGCACGAGGGGCGGATCTGGAAAAGAAAAAGCCTTTTTTCAATTCGAGCCACCTATG
TGTCTCCATGTTTCCTGTCGGCATATGCCATTGTAATGTAAGTATATATAAATTAGTATC
AATAACACTTTGCATCCAAAATCACTATACGTATCAAATAATCTGTACATGTTATCTTAT
TTATTTTTTCTAACATTCCTTGATGCATAATCACTTATGATGAGCTCGGTGTCATTCTCA
TTTAATAATTTTTCTCGATGCATAATGTAGTCAAACTATCAAATTTGTGTTTCAATCACA
TCTCTGCATTTTTCAAGAAATCAAATTATTTTACCCTTCAATTACTATCTACTCATCCTT
TTGCTACGTTGATATCATCCCTAGGTAAAAAGATGCAACTTTGCATGGCGTGCTGCAAGC
AATTCGCTACCTACATGGGAATTGAAACATGGAAGAAATACGGAGACTGATAATTTGTGG
CCCGTTTGCCGCGTGGAACCAGAAGTTCCTTTTCATCTATTGTGTCCGTGCCCCAATGCC
AGGGAGTTGTGGCGCGATATGTCAGATGTTTGCCCCCTACAGAAGCTTAGCAATCTTTCA
AATACAGGGTTCGAATGGTTACTGCATACGCTCTAGAGCTGGCCAGATAAACACCGGATT
TTCTTGATCCTGCTTTTTATGGAGGCGGCAGTGTCCCTGCTCCGTCCCTGCCGAGACTCA
TGACAGAGCGTAATTTACCTCATGTACACGGCACTAGCCGGCATCAGTTGGGAATGGTCG
ATACACGGACACGTGGGAATTTACCTCATGTACGAAGGATGCTAATTCAACCATTCAAAT
GCAAACTTTTGCGAATCACATACTAGCTTGCACTGACCATTGTTAACAGAACATGGACTA
GACTAGCTGCACCGTGGCATTATAATGTAAGTGTTGAACTAATTATTTATGGTTAATGGC
ATGCACATCGATCAATGTAACTGATCGGACACAATTAGGAAACATGGTTAGCAAGTGCGA
AAAACCAAAGATGCCAAGCAAAGCAACTCCACAGATGTGTTTTATGTCAACACCACCACC
GCCGCCGCAGCCACCACCACAACAAAACTGAAACGTCAGGCTGTGATGGAATTTACTCAA
TATAAAATAACAGGTGCCATGATACATAAGTTCAACCAGATGCGCGGGTTTCTGAAACAT
ATAAATAGAAAATAGGCCTTCAAAGGTAGTTCAGGCCTGGCAACGAGTTCAGTACATGAC
TTGATATGAATGGAACAGGGACAGGCGCACGGTCCAGATAGGCCAAAACGAAGCAACATG
ATGCCACAAAGATTAACTTATCAGCTCCTTCTGCTCGAAACTGAAGGCTGCATAAACAAT
AGTAGACACAAATGAGCATGTGAAGTGCAGATTAAGTAATGCGAAGGTACGATCGGATAG
CAATCGGCACACAAGGGTAGCTAATACTGTATAAGAAATTGTTTTGTAAGATTGGATGAA
CATAGAACATGATCTCGTTTTGCAAATATTGGAAAGATGTGCTATTAAATGATTAATTTC
ATCTAAAAAGTGAAAATAACTCATATTGTTATGTGCTTATTTGACCTTTTACAATTGCTT
TGGCCTAATCACATTGTCAGTAGAATATGTAAAGTGGAGATGATATAACATTCTAATCGA
TTTTTCAGTCCTAAACTTACAAACAGTTCAAAGTCTACCTGTGAAAATTTATAAATAGTT
TAATGTTCAGTATTCGATTCCACTAACACATGCAGACTATATAAAAATTTATAAAAGTAT
ACTTAGTAAATTGTAAAATAGCTTACAGGGATACTAAAGAAGTTTGATGTCGAGTTGCGC
AGGAGTCACTCCATGAGTACCAAGGATCTTTTCAATTTGAAAAATCATTTTATCTTTCTT
CCGACAATGGATCTCAACTATCATGAGATGCTTCGACACCAAGAAATATTCTGATGGGTT
GTAGCTTTCACTTGAGTCAATGCCAAACTCCTGCCACAAACATAACATTTTACAGAAATG
ATTCAGCTGTACATGGTAAGTACAAAGCTATCATATATGAAAAAACATATACCTCATAAG
GTAAAAATTGAAGGGTAAGCTTTTCTAGAATTGGTGAGTACTGAAGAAAGTGAAGTAGTC
CAGTGAAGTTCGCAGTCAGACACCATTCATTGAGCAACACCGTTTTTAGCATACAAACAT
GATGACAAGAACGAGTGGATTCATAAAAAACATTTAACTGGATATTAGGAAAAAGTTTGA
CATGCGTACTTTGATTCATTGATATTTGGTACAAGGATGATCTTGGATGGCAATCAAAAC
AAGGAGTTAGCAAAAGTGAAAACATACCATAGAATATACACTTATCAGCTTTAAATTCGT
AGCGCCGGACAGCCCTTCAAGAATCACAGAGCAATCATCTTCTACATAGCATCCTTCACA
TGACTCAACGCCACAATCCCCAAGGTACTTATATGCATCACAACTATCATTGCATTCTAC
ATCTTCAATAATGATAGATGATGTTACCAATGATGGCACGTTGTCAAGCAGCGGAGTCCA
CCCTTCACAGTCCTCTAGTTCAAAGGTAACCAGACCTGGAGCAGAAAGACGACTCCGTTG
TGTATGCATGGAAATAATGATTGAACACTTGACTGTCAGATGTCGTAAAGATTTGGGTAA
GATATCCCCAAGGTTGATAGAACAGCAGTCTATATCTAGCACCTCTAGTGCATCACAGCT
CACAAGATCTAGAGGGCTTTCGTCAAAGTCCACACTATAAAGCATTAAATCTGTCAAGTG
CCTGGAGATGACACTGTTGTTTGACAGATACAAATGATAACCATCCTGTATCAGAACTCG
GAGCACCGACACTTGGCATGAGACAGCATACTGGACCCATGATTCAACATCGCGGTATAT
CTCTTTTTGCTCACCATACATATATGAATTGATATGACATTCACGAAGAGGTGAAGTTTG
GTCACGGCACTCAAGCACCTTATTAACAAAATTGTTGAAGTTCTCGGCACTGCTGAAATT
AGAATAAGGATCGAAGCGCAGGACTGGCACGGACTTCCAGAGGTTGCGCCAGCGGCGAGC
GAGCACGGATGTCCTCACGGCATTTAGCGCGTCCAGGAAAGACAGAAGCAGCTCGAGCAC
ATGATCCGGGAGGTCCTCGAAACGGTCCTTGCCGCCAGCCATAGCCACCTTCTTGCTGTC
AGCCATTCCGTCGAACAGGTGGCTCGCGCCGCAGCTGCCGAGGAAGCGATGGACAGGGAA
TGAGTAAGAAGACCATCAGCCAAGCAGACGAAAGAGATAACCTGAAATACCTCGTCGACG
GCACGGCACGGCACGGCACTAATTGAGACTCGACCGGGCAGGAGCAGAGTTGCAGAAGGG
AGCCCTCCCTAGGCCATCTCCGTTCTCGGTTTGAGGCAGTTTATACGGCATCGCCTAGTC
CCCACGCATTCCTCCATTAATACAGTCGCCTCGAGCAACCAAGAGGATTGAATTGGAAGA
CGAGACGACGAGCAACTGAAGGCAGTTTACTGTTTATACCGCATCGCCTAGTCCCCCACG
CCTCGACCAACGACCAGCAACGGAAGGCGAGAGCATTCACACTTACTCCCTCCGTTCTAA
ATACAGTATAAGTCTCTTTTAAGATTTCACTAATGGGCTACATACGGATGTATACAGACA
TATTTTAGATTATAGATTCACTCATTTTGCTTCGTATGCAGACTTTTAGTGAAATCTTTT
AAAAGACTTACATTTAGAAACGAAGGGAGTACTAAGTAGTAAGAACTGCATGACGAGTAC
GTGAGCATTTACACTTACTAAGTAGTACGAGCTGCAATGGAAGGCGAGAGCGTTCACAAC
GACGAGCAATTGGAGTACTACGTGAGAACACAACTACTCCCTCCGTTCCTAAATATAAGT
CTTTTAAAAGTTTCTTTAGTGGACTACATAGGAATGTATATAGACATATTTTAGTTTATA
GATTCACTCATTTTGATTCGTATGTAGACCTGTAGTGAAATCTTTTAAAAGACTTATATT
TAAGAACGGAGGGAGTAAGTAGTAAGAGCTCCATGTGAGCGCCCGACCAAACAAATCTTT
TGTTCCAATTCTTGGATGTGCGGCGCAAAAGATGGGCATGCCATTTTGAGCCTTAGAGCT
AGTAGACCCGTATAATCGTCGGAACTATAAAATTTCGACGACTATACGGTTTTAGACTGT
TTTTTATGTCATACCAGGTACTGTAAATGCAATCCGATCCGTAAAATTTTGACGATGGCC
CGTAAACGCGACCGCTTGACCGTTATATCTACGGGTTCAGCCGTTGGATGCGGGTCGAAA
CCCTATCCCTCCACCGTCGTGAAAAGTCCCCCCGCCTCACCGTCGACGCCTAAGATCCGC
CGCCACGCGCCTCCATTCCACCGCGTAGCCGCTCCATTTCACCACTCTTGATGGCCAACT
CCGACGGCCGTAGGAACGACGACCCCGAGAGGACTCGTGACGTCAGATCGGACACCGTCC
GAAAGCGCGCCGCCCGCCGGTACACACAATGGGGCATGACGTCGCCACCGTCGCTCCTCC
GTC