Map Locations of contig_41492 (11074 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_41492

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57184 1 1177 bp MLOC_57184.1 Available Available LOC_Os06g37020.1, FRAME:-2, EVALUE:5e-26, 13106.m03832 protein expressed protein





CDS Structure of MLOC_57184






Contig Sequence (11074 bp)

>contig_41492 11074 assembly3_WGSMorex_rbca.fasta
ATAAAAGCATGATGCAAAATGCACGCATCAGCCACCCTGCGAGGGAGATTCACCCTCTTC
AGCCACCTGTTTGTGGGGATGAGGTCCTCCGCCCCTTCCGTGTGAGCGACGACCTTTGCA
CTAGCACCGACTCTGTCCCACTCAGTATTCATCACTTTGTCAGCAAGATGGACATCAGTA
AGCATAGCTTACAATCATTAGTACTAACACATGACCAATACTAACAAGGATATATCAATG
ATCAATGCTAGCACTCATCAAAAGCTAGCAATGATCAATGTTACTAGTGATCAAAGCACC
CTGACCAGAGGTAGCAATGATCAAATCAAGCCAGGGTAGACATATCCTACTTGCACCTAC
CACGTTTGGCATTCAGTTATATGTCCTACTTTCATGCCATATGCACTAACGTACCCTAGC
AGGAGGAGCTCTAAGAACTAACAAATAGCAGCAAAAACATGAGCAAGATGAGCACGAACA
AGTAACAAACAACAACAAAACGAGGAGCAAGAGTAGCACTAACAAGTAACAAACACTAGT
AATAGCACTAAGACTAACAATGTGGCAGTAATAACTAAGCTTGGAGTAGTACAAAGTAAT
TATGTGGCAGTAGAAACTTACAATGTGGTACCTACAAAGGCACAATAGCACTACAAAGAC
ACAATATGCGACTAAGACTAATAGTGTAGCAGCGATACTAGCCATATGGGATGAACATGG
TACACGGGCACTCTGGTTCATCCCCAAAACAGTGGACAAGTAACAAATCCGGCCGAATCG
AGTCGAATCGGATCGAATTGGGCCTAATCTATTGTCCTAGAACACAACTAGAACTACCCT
AAGAACCCTAAGTAAGAATCAAAAATAGATTGGAGAGCTTACAGTGTGGGTTGTTGGTGA
TGCGTACGCCGATCGTGGAGAAAAACCCAGCGGGAAGAGGCGTGTTGGCGCGGTCGATGA
ACAGGACGTGACCATTCCGAGCGTCGCGGCCATGGATCTCGTCCTACGTCGGCTCGAAGA
CGACGCCGGTGTCCTAGAGCTCCCCTTCCATTGCACCATACGCAGAGGAGAAAATCCTCT
TATGAGGTTAAAAAAACCATAAGAGGGGCCGACAAAAGACGATACTAGCGGGTATTGGAT
CCTCGCGAGGTTCCAATGAAAGGAGTACATGAATGGCTTTGATGGTGGAGCCGGAGCGAC
CAACACTGACGATACATTGGCCCTGGGCGACAGCATGGTGCAGAAAGGGAAGGGGGCTCG
CAGTGCCAGCGCTAGATCTACTCTGGAGGAGGACAGGCCGACGACCCACCTCTCTTTGAT
GGGGTTGCTTCTAGCGATGACCAGAGTGGATGCAAGCTTGCGAGATGACGGAGTGGCCAT
CGAAGAAACCGAACAGGCGGTGGGAGGTGAGACAGAGGGAGTGAGTGTGAACTGACGAGG
AAGGTGACATGAGAGGGGTGGGGAGTTATGAGCCATCGCGTCGTCTCCCGCGTTTCCCCA
CACATGCACGCACTCACCACACATGGCTTGCACATGCATGGCTTGCAAAAAACAGCCGAT
TTGATTTCTTCTCTAGAGCTAGGCCCAGAGCTGCTTTAAGTTTCATGCGGGCCAACTCTT
GCATGCAACCCACGTAACCGAAGAAGCCATTTTTATCCTGCACAGGCCTTGTTGGCACAA
ATACAGGCAACCAAGCGCATCCAAAAAGATGCTGGTTAAACTTAGCTTGTATAATTCATC
GTTCAAGACCGTTTAAGCTTTAGATCGGCGTACATTTTGTTTTGACTCTACCATATCTTC
AGGTTGCTCCTTTTAGAGAAGTTATGCAATGAATGATAAAGTCCAGTCAGGATTGACTAC
GATTTGTTTCTGAGTCACGTCGATGGCTCTACGACAAAATGGACACAATTGATCTATAGA
CGTAACTAATTCACAAAATAAACTATGGGCGAAAAAATTTCACATGCCTAACCTATTTGT
GTGGCGCCCGCTTTTGGGCGTCATACTACACTATGTAGCGCCTGACATACGAATGCTACA
CCTCTCGCCATCATGGTAACCGGGACCACACTTCTGATTGTGTGGCGCCTAGGTGAAAGG
AGCCATACTACGTTGTGTGACGTGTAGCTGAAAGGATCCACACTGCCTTATATTAAAACA
GTTGTAACTTTTAATCCGTGCATCCAATTATAATGTGCCTTATATGAATGTCGTGTATTT
TTCTGTGTTCTACGCAATGGTGGGATTTTCATCTATGTTAGGATCAAATTTCTTGATGAA
AACTCTGTTATAAAAATGCATCATAGTATAACTCACATAATTTGTTAAGACTTACAAACT
TGGCATGATGATAGCAATTGTCCTTATTCATTTTCATCCAAAATGATTTTTGCACTACAT
AATGTGTATGTGCACGCCATGCCAATGCTTGCCATTTAATCATCTTTAACATGTTCATGT
CTTGCCTCTAAGTGACTAATATGAAATAAATGAAATCCTGTTATAGAAAGTCGCATTTCA
TAAGATCCATAGTAAAAGTGACTAACATGATACAAAAGAAATTTTGTTATAGAAAATTAC
ATAACATGATCTGAAGCATGGTTGATTTACTATGCACTTTACAAAATGCAAAGTTCTGAT
GACATCCAGGGACTTGGTGAATTTAACAAGTGTCAATCTCGCGGAACTGAAAACATCGTG
ATGCAAGTATTTAGTGGGTATGAAAATGACATGAATTTAAAGTAGACATAAAATTTTCTA
ACTTTCATAATTATACCATAATCATATGATGCCATGATTATTTACAGTCTTATAAAATGC
AACATTCTATGATGGAATTTCGTTCATATCATGTTGGTCACTTAGATGCAAGACATGAAC
ATGTTAAAGATGACTAACATGGCAAGCATAGACATGACGTGAACGTACACATTATATAGT
GTAAAACTCATGCAAGATGCAAATGCACAAGAGCTATATGTCAATGACCATCATCATGCC
AAGTTTATAAGTCTTAACAAATCCAGTCAGTTATATTCATTTTTAACCGAGTTTTCATCA
AGAAAATTTATCTTAACATCGATGAAAATGCAAACATTGTGTAGAACATAGAAAATACAC
AACATTTATATAAGACAAGTTTTCATCGGATGTACAAATTAAAAGTTATATAATTTTTAA
TATAAGATATTGCGACTCCTTTTAACTAAGAACCACACAATGTAGTGTGGCTTATTTCAC
CTAGGCACCACACAACCATAATTGTGACCCCGGGTGTCACGCTCGCCAGAAGTGTAGCGT
CCGTAGGTGAGACATTACACAGTGTAATATGGCCAACACAGAGATGTTAAACGTGTGAAT
TTCTTTCATGCAGAGTTGATTTTGTGGATTAGTTGCGTTTATGGATCAATTATGTCCATT
TTACCACACACCTTTGCCACGTCCTAGGGTTAACATGCATGTTCAAGTGGTGGGCCAGTG
GGAAACGCCAAGACGGTGATGTCTCCCGGGTAAATAAAACGTTAAGGCCGCGTTTGGTAT
GGGTATTTTAATACAATTGTATTTAATTTATAAATGTAACTTATCGAACTGTGTAGGATA
CGGGCTGTAAAGTAAACGATCGTCGGAGGTTTTATTTTCAATACATGTGTATTAAAAACA
TGGCCTAAGTGTTGTGCACGTGCGAAAAATACGTGAGGGCTGTTGACGCGACAAAATTGT
CAGATTCTTTTCACAGACATGATCAAATCATGCTAGTGTTTCGGTTTAGGATCGAAACAT
GATTTCGGCCCCAGTTCATAGCCTAACCGTGTTGAGGTTGACTTTTTGACTTGGAGGACC
CAAGCAGGGCTGTCTGCTTGATTATTTTCCTTTGATTCAAAATACTCATACTGTCACCGA
AAAAATGTAATCCCTCTGTCTTAAAATAAGTGTCATAAAATTTATACTAAATTAGTAGAA
ATTTTATACTAAATCAACGACACTTATTTTAAAACGGAGGAAGTACTGTTTTACTATTCG
ATTTGAGCACTGCGGGATCATCTCATGTCCGTAAAGCCACCAGGGACCATGCTTTTCGCA
CTGGGCATATAATCTTCAATGCATTTCTGAGTCAATGACTGAACTGCATCATATCCAACT
GAATTGCATCATATCCAACCACTGCAAGCAACGAGGTATATAAAGGTCGAATATTCAGGC
ATCCATAACCATCCAACTGTCCACATACATCCGGATCACGTGGTTCGAACCGTGAAAGCA
ATTCAATGCGGATCTATATGAGTCTGTTGAATGGCTTTTGTATTCGACCTCATCGGAATC
CGCTATTTAAACCCCGACCACACCCGGCTAACTCCATCACAAGACAAGCAACTCACTCCA
CATCCTCCTCGCTTGGCCACACGACATCCTCCATAGCTGCGTATGGTAATGCTCCGTGGG
AAAGCCTGTCGACGGGATGAAGCATGAGATGGCCGCCCTTGCGGCTGCCTGGCAAAGCCG
TCGTGCCTGGCGGATTGAGGTTGGCATGCCGACCAACTTGCCTTAGGTCTTCCACAACAA
GGATGACCTCATGATGGAGACGGGCTCCAACCACACCGTACGAGAGATCATCCCTGTGCA
TGTCGGCTTCACCATGGACTAGGCACATGCATGCTTCAATGCCGCCATGGTGAAGGAGTA
GCCTGCGTCGGCGCTTTTGTCGGAATTCCTACAAGAGCAGGAGAAGTAACGATACAACAT
GTTCCTCTTTGAGCAGCACCGGTTGGCAGATGGCCAAATCAACGACAAGCGCGCGACTGA
GGAGGCCATAGAGGTCATGGCCGTGACAAACCCCAACTTCATCACGGAGCAGCGTGTGAT
CTACAAACTCTCTGCACTCAAGCCATTGCTCGCGAGGAAGCGACAACCGCGAAGGCACAA
CTGCAAATGATCGCGGACAAGAACAACTCCAGTTGCGGCTCGGATGCCCAACCGACGAAC
TATCGGGCAGTCCGGTCGGATGACGACAACATCGGTGCCACCATTTTCATCGTGGACCTC
ACGTCCACCGGCTACGGACAAGGCGCAAACTCCTTTGAAAACGAATAGGGCATGAGAGAC
GGCATGACCTTCTGTCCCATGGGGATCAGTCCATCTTTCATGCCTCATTCTCTCTCGCCG
GTGACCACAACTTTACTTTATCGGTCTTATCGCTAATGCCCAAGGATACGATGGATGGAG
GACGGCAAGGGCTTGGATGCCGGACGTCGTCATAGGATAGGTTTAAGATCAAAATGTTTT
TTTGTTTAAATTGTTTGAAATGTGATGAAAATCCGGCGTGTTTATATGAATGTTGTCTGT
TTTATATAAAATTTGTCATGTTTATACGAATTTCGTTCGATTATTTCTTTTTATTGTTGA
AATGTATATGGATAATATTGAATGACAGCCTTCAATATCAGTGTTCATAGATTGATCCCA
ATAAATAGACAGATACCAGAGGGAAGTTATGGTTTGGAGATGCCCTCAGATGGGGATGCG
ATCTTCGGCATGTGCTTTGCGCTCTCTTGTCTTCCCACCACATGACGCCTAGACGCCACG
GGAACAGAAGGAACCTGAGCACAAGCCAAACTTTCAGTACATTCAGACCCGCACGAGAGA
AATGTGCGCCGTTGTCTGTCTAAACAGAATAGCCGAACGGGAATGAAAAACTGTTTTTGT
TAGGATGTGTGGTGACAAAACGGCGCAGAAGAACCCTCATCAGCATTAAACATATTCAGA
TTCCGCGGCGCATAGCATGGGCCGAACGACACAACATTGGTTGATTTAACGCTTGAGAGC
TGGCTCGCCGCAATGTCATTTCTTGGCAAAGATTCGAACGCCAGGTTTTGTTTCCTTATT
ATTCATTCATCCACTAGGCTAGCGCGGGAAGCTCCGTGGAGCATCACGGAGCACCCGCGG
CTGCGGGAGACGACAACCTAGCGCGCCTCTGGCGGCGGTGGAGCGTACCCCGGGAGCGCA
TGAAGGAGTCGGCGCGCTGCAGCTTCAGCTGGTGGTGGAACTTGTTGATGAACTCGTCCG
CGCGCGCGTCCACCTCGCCGACGGCTTCCTCAGTCTCCTCCTCCGGGGCCGGCTCCTCTA
GCTTCGTCGCCAGGTGGTGGCGGCGATGCGCGTCCCTCGTCGTCGCCGGCCTGCGCGCCT
CCACCACCTCGTTGTCCTTCTCGGCCACGATGTACGCGAACGCCGATTTGTCGCGAGCCG
ACTTCCGCTGCCGCGCCGGCAGCCGCGGCAGCTCTGCCTCGACGGCCGCCTCGGACATGC
TCCTCTCCATGTGCGTGTGCTCGTGCTCGTGCTCATCCGGATTCTCCGGCTCCATCTCGG
GCGGCGGCGGTTGCTCGTCGGGCTGTCCCAGATCCAGCACTCCGGTCGCCGGGGCCCCAT
GGGCGGGGGCGGTGAAGCGGGGCAGGTCGGGCGAACGGTTCCAGTCGAGCGCCGTTGACG
GCCCGCCGGACAGGCTGCTCTTCTCGACGTTAGCCCCGGCAGCAGCCCCTTCTCCGCTCT
CCGTCGGGGCCGTGACCACGGAGGTGATGACGATGGTGACGACGACCAGATTGAGCACGA
CGAACAACACCCATGGGGTGAACCACCCGTGCACGGTGTTCCACAACTCAGGGATCGCCG
GCGCCTCCAGCATTGCGCCGCTTCTTCTCCTTCTTCGCCGAGTGGGGTTTGGGTTTTGGC
GTTTTGGGGGAGGAGTTGGAAGTTGAAAGCAGGGTCGGGGAAGGAAAGGGAGTGTGGCAA
CTGGTTATTTAAAGGTGTGTGGGGGAAGGACTGCCGAATGCCAGATTTTGGATGAAAAAA
TAGGGTTTTATGATAAGCATCACTGTTCATATCTTCCATTACTATGCATGGATTTGATCA
TCTATATTTACTCCTTAATGACAGTGTGCACAATAAAGATGCAAATAATTAAATGTTGAT
GCTCCTATTTTTATAAAGTGTCGGTTTCTACAAACATTGGTTGGATGGCATCACACGTGG
ATGCTGATCGAGGAAGTGTTCTTTCGGCGCTTGGACGGACGCAAAAAGAGAAACAACTTT
TGGTGTTATAGATAATCCGAAGAGAATTTTGTGGAGCGATATAGCATCATTAGTGCGGCA
TTTTAATGTTGCGAGGAGGGTTCCACACTGAAAAAAGTTCTTTAGGTTGGTGTGTCACGT
GCATGCTGGTCCGCCATGTGTTGTTTCGGTGGCTAGACCAATGGAAAGGCACTACATTTG
TTGTGCGTTATTTCTACGAAGATTTATGGTTAATGCAAGATTATTTGTATTTTCTAGATA
AAAGAGGCGTAGTAGTTGTTGGGTTTTGCTTCAAAGAGAAATGATGATACAACACAAAAG
AAAAATGTTTCTCTTGATTCAGAACCAAAGTTCAATCAAATCAGTACGAATCACCAAGCT
AGCAAGGTCAAACAAAAACAATACTTTGTATCCAACTTGAGAAGGGGCTTGTCAAGCCCC
TTCTCTTGCTAGTTATAAGATTAAAACCAAATAGATAGATAGTGGTACGACAAAAGTAAA
GAGCAATCTTGTTGAAGCATGTATTAATAGGAGAATGGAGCGGGGCATAGTTTCACTAGA
GTTATCTTTCTGGAAAAGAAGGAAAACAACATGGTAACAAACTATAGTTGGGCAATTGAG
AAGAATAGCAATGAGTATGACTCTGATCATTCATGGCATAATATCATGTAGGCATTACGT
CTGTGACAAGTAGACCATTAATCCAACTTCATCTACTACTATTACTCCATCCCAAGACCG
TTATCCATCATGCACCTCAAAGTATTAAGTTCAAATAAACAAAGTAAGACGTTAAACAAG
GTGGCATAGTGTATACTGGAAGAAACCTAGCAATAAGATAAAACCCCGTCGTTTTTTCCT
TAGTGGTAATAATAAAATACGTGTCGTGTCCCCATTTTGTCACTCGGATATAGAAATCAC
CGCAAGATTGAACCCGCTACTATGCACCACTCCCTCTGAAGATCTAACAATCAATCTTGG
CCAAATAAGACAAATAGATCAAAAATCATACCCAACTAATTAATTATAAAACAAATAAAT
GTCAAAGATTTAAATAGATTCAATAAACAATCTGATCATAAACTCACAAATCATCATGTC
CCAACAAACACACCGCAAACTTACATCTGATTGATCCCAATTAAGGAAGGAAGAAGGGGA
CAAGGTATTGAGGATTGAAAAAGCAAGAGAGAGAACCATCTAGCTACTACTATGAACCCA
TAGGTCCTGAAGGAACTACTCACACATGGTCATGGAGTCAGCAAAAATGATGAAGAGGCC
TCGTCCAATGGGTTCCCCCCTCCGGCTTGAAAGCACAACTTATCTCTAGGTGGTTTTGGT
AATTAATAACAACATATATTTCAGTGGACTAATCATTCTACCAAGTATATTTCAGGAAGA
GTTCAATGAATGGATTGGCAAAGGACTCTGAGGAGATCCCCTAGATGCTTGGAACATCAA
TTAGCAAAAGCTTCAAGACTCTACATATTGTATTTTGTGAGACAAGTAGACCGACTCCTG
CCTACATCTAGCATGCATCTAGTATATTAAGTTCATGGAGAAACGGAGTNNNNNNNNNNN
NNNNATGACATGATGTAGACAAGGTCTATTCATGTAGGAATAGACCCCATCATTTTATCA
TGCGTGTCATGTCTCTTTCTGTCATTGAGATTGAGCATCGCAAGATCGAACTCATCACAA
AGCACTTCTTCGCATTGCAAGATAAAAAGATCAAGTTGGCCACACAAAAACGAAATGTTG
GAGAAGAAATGCGATGCCAACAAACACACCGCAAAAGATAGAGTTACATCAAGTAGATCT
CCAAGAGACCATTGTATTGAGAAACAAAACGGGAGAGATAGCCATCTATCTACTGCCTAC
TGACCCGTAGGTTTGATATGAACTACTCACGCATCATCGGGGGAGCACCAATGAGGATGA
TGAACCCCTCCGTGACCGTGTTCCCCTCCGGAACGGGCTCTAGATTGGATTTCTTGGCTT
CTGGAACTTGGGGCCACTGAAATGATTTTTCGTCTTCTCTTCTAGGGTTTCTGGAATATT
GGGGTCTTTATAGAGCTCACAGGCGGTGGCGGAGGTCCCGGAGCCCCCCACTGATGGGGT
TGTACATTAGGGGTAGGCCTACGGACCTGTTTCCTTAGGCCCACCTAGGACTCCTTACGA
ACACCAGTGTCCTTAAAGTCACTGTTGAAGCCTCGACCTCATTCGGTTCATCAACCGTCA
CTCGGCCTGCTCAGGGTCACTCGGCCTGCTTAGAGTCACTCGGCCCGCTTAGAGTCACTT
GGACCACCTCACGTCTATCGGACGCATCCTGTCCCTCGGACCACGATAAGGTGAAGGCAC
CGAAGAGGTAGCAACTACTAAGGACTTAATCCACCACATGAAGTGAAGTGAAGACCTACG
TTACCTATAACGCCAAGTGTTAAGGTGTCATTTATAGTAACTTCCATCTTTATTACCATT
AATTGCCTTGTAATGGAACTCAGATGGTCATGGCAGCTATTATATAAGCCACTCCCGGAC
TGTAGCTCAGGGGTTCAACACTTGTAATCTTTTACACCCCCATAAGAAAACACCATCCTC
AGGGCTCGATACGTAGGGCATCTGATGCGCCTAGCTAGATTTCACCCCATAGTTTGTAAC
CCTGGTACTATTGTCAGTATCATTCCTACGACAGTTGGCGCCCACCGTGGGGCTGAGCGT
TTAGCAAATCCTACGAAGTTGGAGATTTTTCACACTTTCATCAACATGATGACACTCAAC
ACAGAGATCCTCTTCGGTTCCCTCATCTTTATCGTCGACGACTCGGCGTGGGTGCAGGAT
GCGCCACTCGACACCGACACCATCCCCACACGAGGTACGTTGCATTTCAGAGCAGTAGCA
CATGGAGTTCTGATCCGGCAGCCATCTGTTTCGTATCATTCAGCATCGCCGCGTCCCGCT
GCTGTTCGCCGCAAGCTCCCCGGTTGCTCGTGAATGTAGCGATGGATCAGGCACGCTATG
GCCAACCAGGCCATCTCCGGATAGGTGGCCATGCTCAGCTCTGACGAGCCCACCGTCAGC
CTCTTCCCTTCGTCGACCAAGGGGTCACTCGGCGACTCTGACCGCGACAGCAGCACGGGT
GCAACCGAGATCCTGATGGCCGACACCAACAAGGGAGGAAACACAGATCACGTCCTGGAG
GATTCTCCCGAGTGTGACGGCAGAGAGCATCGCCATGGCGACGACAACCACCACATTCCG
CATCCGCTCACCGAGCAGCAGCGGGAGGAACTCCGGCGAAGGAACGATCAAGTTCTCCGC
ACCCCATCACCGGGAACACCCCAGAGGAGATCGCGCTGGAAAACGCACGACTGGCCAACC
TGGACGAATGCGAGTGCCTCAAGGAGCTCCCGTTACAGCCGCACGCAGTTGTTTCCGAAC
GACCCCCTGCGACACATCGAGGTGATGCGAACTCCTCTGCTGAACCTAGCCACCACCAAT
CGGATCACTGATTTCATTCAGCCGAGTGACAACACGGCCCGAGAAGGCATTCGGCAGATC
CAAGCTCTGCTGAAGACGACCTTACAGTAGAATTCTGCAGTATCACAGTCGTGGCACCGC
ATTCACACCAAGTCCGTCCGGGTGGACACCATGCAATCGGTTCATAGCCCGCATGTGCAC
AGGCGACGCCAAAGGTCTCCTCATCTTTCAAGCTGCCTGCAGGGTGACTGGAGGCAAGGT
CATTGGGACCGAAGCAGGTGACCCCCTCAAGGGAATGGCTCACTTGGGGGTCGTCCTCAC
GACCGCAGGCCAAGCCCCAATCGGTGTCGCGGTCATGAGGGCAGCGACTACTAGGCCCCC
GAGTTCAACTCTCGGTCCATCATCATGCAACAAGTGATCGATGGATCGCGAGCTGGCTGG
GGAGTGTCCGGTCTCAAGTGCTTCGATCGACACATCCGAGAGGCCGAAATCCCCTCCCAC
TACCGGCTGGCCACGGGGATCGGAAAATTCACGT