Contig Data
morexGenes
Links



Map Locations of contig_41485 (4724 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_41485

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57173 2 1230 bp MLOC_57173.1 Available Available LOC_Os07g07220.1, FRAME:-3, EVALUE:2e-57, 13107.m00698 protein LSM domain containing protein, expressed





CDS Structure of MLOC_57173






Contig Sequence (4724 bp)

>contig_41485 4724 assembly3_WGSMorex_rbca.fasta
TCGTAACTATAAATTCTCAAATTATAGACATTTTTTATAAATTAAGAGTGTGCCGTATGG
TATTTCTTTCTCCCGTTACAACGCATGAGCCCTTTTGCTAGTAATCATTAAAAATTCCTA
TGAAAATCCTTCGAATCAGAAGCCATAAATTTGATTCCATGACACAGCAACCCACACTGG
CGCTTCCAAGCCTCCTATGGCACACTGGAGTAGATCACATGAGTAACAGCATAATTCATA
TCAAAGAACGAACAAATGAAACAGATACACATGCAAGCAAAGCAATTTATGATCTGAAGT
TAACAGAGCGAAATAACATCTCAATACAAGTGCAAGCACATCCAGCAACAAGGCCCCGAC
ACAACAAAATAGTATATCCATGTCCCTAGCTTAACAACCAACAGTTAAACAAGCTTTAGC
CTCTTTTACGTACATCGCACTGGACAACAGTCCGTCTCCTCCCATCAAAAGCAAGAGTGC
TACACTGACAAGGCTTTTATCTCTTCTCAAGGTGAATCTTCAATGGAAGCACCAAACCTG
CAGAGGAGATCAAAATTCAGTACAATACACATCAAAGAATGAGTCTCAATACTTCCTCCA
ATCCATATTACTTGTCGCTGAAAGTTTCTGAAGCAACCGCAAGTAATATGGGTCGGAGGG
GGTATTAAATAATGTGCAAGGAGAAACTGCAATCAAATTTATATATAAAGAGACTCAAGC
CGAATTACCTAGCCTACAACTGTGCTAACAATGTTTAGCTACAGCAGAACATCACATGAA
ACAGTCATCAAACAAAGAATATATAAGCACACATTAAATTCAATTGTCAACAATCCCAAT
TGGCTATAAACATCTTTCTCCATGCTTAATAAGCACGTCCCTAAAGATGAATAAGCATGT
GATTCCACACCATTTTCTGACCTAGGATGATATAGGTTTCTCCATAAAAATTTACTTCAA
CACAACATACACCAGCATCCACAAGAATATAACAAAGCGCACAAAAACAAGCAAAATCAG
GACAGTGGGCACATGTGCCACAATCTATGACAGAATCATGAGCATTGTTTAGAAAGCGGT
AAAGCGACCTAAAGCGAGCACCACCCACTCTAACGCTTAAGCGACACCTAAGCGCCTAAA
GCGGGCAAATATCTAAGGCGCTGCCAGGGCGCCTTGTCACTTAAGCGACGCTTGAGCGTC
TGAAGCGGGACGCTTTATAAACAATGATCATGAGGAGACATCACTAATGTGATCCATAGA
GGTGAGCTCAACACAAATAGTACCTACAACTAAGGACTTCATCATTGCTGTTAGACAGAA
CAAAGGTATCAAATGAAAACTTATAGATTAATTTCAGCTTGGGGTTCTGAGAAACTCGAA
CACCATTTGGATGCATCCAAAGGCACATGACAATAATCAACTATGCAAAACATATAGCAC
CTATTAAATGCTTAAGCATACAACACCTCCAGGAGTACATAATAATGTGATTTTGTGATA
ACAACACAGAAGATTTGATCTTAACAAACACTACAAAAGAAGAGTTCTTCGGCATTCAGA
TTTTCTTGTACCGTCTACATTTGAACAAATTAATACTGCCAAATAAGAAATCATATTTCC
GACTTTACTCCAAGAATAGACATACTTATATGACTTGAGACAACAATATACTACTACTTG
AACTACCAAGTATAAATGATCATATTAGGAAGAGCTTAAGCCGCCCAGGTATGTCTTCCG
GCCAAAGGACTCCACACTGCCTGCTTTCTGCATCAAACAAAAGCATCTAACAATTTTCCT
CAATGCCTATGTATACAACCATCCAACATGACATCATTCAACAGAAATTTTGGGCAAATA
TTACCACACATATGAAACTTAAATTAATGAATTTTAGTTCGTGGTGAAGCACTTTTTTAA
TGTTACACCGCTCCCATAGACCATCCATTAGACGAAGATTTGATAGATTTATTATACAAG
TTAGCCTTTTGCCTCATGGCATGACATAGGTAATTCATGACAGCATAACATGCGGAATGC
AGATGCATTTCCATCTCATAATAGACTACAGGAGGAAATGGAACTGATTTAGAATGAAGA
GTACTTTTGTACATTTTATGGATATAAAAATCTCCACTCCCAAGACACAGATGGTGATGA
TGGTGTATTTTTCATCTGTCATTTCTGACCCTCCGATCTACTTTTAATGCATGCGAGGTA
AGCCATGGCAAAAAGACAATGGACCCCCTTAATCTGCTCGATAACCCCTTAGTCTCTCAA
AATAATCCCCATCCCTGCCACACCTCATCCAAACAGATAAGAGGAATATACTTTGGGTGA
AAACTAAATATTTTAGTGAAATATACCAAGCTAGGGTGATTTTTTTCCAAGTTCGTGAAC
ATGTATCTATTTTGTATATGTTGCAATGCACAGGCATTTTCCTGGTTGAAGTAGTGTTAA
ACTACATATGACTACTAAGTGCAATTGTTCAGGAAATCATAAAGTGGTAACTGCTTGGTC
GCCCAATTGGCCAGTTAATCGGCAGATTAATCACTTAACCGGCTACTCGGTGACCCTCGA
GAAGCTATTAATAGGACAGAAAACTGATTAATCGGGAGAGTTGTTGAACAGTGGCTAGGT
GTCTAAGTGTCAGGAAAGCCACAGGTTATGGTATATTCTAGGCTTATAGCATGCATCTAA
AATATTTGGCCGGCAAAAACAGAGAGCAAGGAAGTTAGTAAGTAATATACACTATCCAGT
TATAGATACACAAGACGGATCTCAGCAGCTAAACATTGTGCAGAACACTAGAACTAGGAT
CAGGTAAGCAAGCCACCATGAGACTAAGTTGAAAATATGACCAAGCTACAAGCATCACTG
CAAATAGTTCAGATCAAGATACGATTCTTTGAACTAAAAAGTATGAACAATATAACAGTG
CATTATCACAACTAGCCAGACTATTTAACAACAGTTGAATGCAGATCGAAGAATTCTAGT
GCTGCTACTTACCAGATAGGTTTTTCTACTACTGGGGGTTCTGTCCAGGCTGCTGTGGAC
CAGGCGGCGGTGGCGGCATTCCATGCCTGGGTGGTTGTCCAAACTGCGGTGGTGGCATCG
GCCTCATCCCTGGCGGTGGTGGCATGCCTGGCATCCCCGGCCTCCCTGGTGGCGGCCCCA
TCGGTGGCGGTCCCCTCATGAACTGCTGCGGCGGGCCCCCAGGGTATGGCGCAGGCGGGG
GACCCGGTGGGCGCTGAAACTGCATCTGCATTGGTGGCGGGCCACCCGGTCGCATGGACG
GCATACCCATCGGGGGCGGGCGGACGACCTGTGGGTATGCGACCGGCGGCGCTGAGAGGT
TCGGCATAGGGGGACGCGAGATCTGCGGCTGCATCATGCCAGGAGCCGGACCGCCTACAC
CCCGAACAGGGCCAGAGAGACCGGGCTGCGCCTGGAGCAGCGGGCCGGTGGCCACCCCAC
GGCCGGCAGCGCGACCAACGCCAGTGCCGGAAAGGGCGCCACCGCCAGCGGAGGCCTTGG
CCCGGGACTCATCGGGCGGGGGCGGGCCCTCGACGGTCATGGAGACGACCTCCTCGCCAC
GGAGAAGGAGCAGGCCGAGCGTCCTCCGCTCCTCGCGCTCGCCTGTGGTCTTGGAAGATT
TTGAGGGCGGGAGCTTGCGGAACTCCTCGCAGTCGCCGAGGACGAGGTTCATGTGGCGAT
CGAAGGCCATGAACTTCCCCACGAGTTGGCGGCCGTCCTGGATGGTCACGCGCATCCGGT
AGTTGACGAACTGGAGCATTTTCGAACCCTTGGGGTTCGACATGGCGGCTGGGGCGGCGG
CGGCGGCGGCGGCGACGAGCGGCTAGGTTAGGGTTTCGGCGGCGAGGAAGAAGCGGAGAT
GAGAGAGGGGTTTTCGTGGGGGTTTGAGTTTGTATGGGTTGGCTCGAACGGGGTAGGCGT
TGTCGCAGACTCGCAGCATCAGGGTTGTCGGTATAGGCCTGGGCCTTCCAGATGGGCTTG
GGCATGGTTCAAACTTCGCAAAAACAACTTCCCCACAACTAAGTACCAATTCTCAAATTG
CCTAAAAAATTATCAATTCTTAAAAAGAAAAAACGCCTAATTACCATGATGAGACCCCTA
AAAAAACCAAGGACGAGTGGACTTCCCTAAAAAAAATGCACAGCAAAATCGATCAGCTGA
GAACATGAAAGATTGCTTCGAGGGACTGAATCTTCATGGCAAGGGACTGGATCTTTCATG
GCAAAGAGAAGATGGATCTAGGCTTCTGTAACACCCCAGATGTAATCCTTACCATATTTG
GATCCTTTCCTATGTTGTGGAACCATGTTTGGATGTTATAAAGTTGTCATTTCATGTGGA
TCATCTCATGTGATCATCTTGCATCATGGCATCCCTTTCAAGTGCATTGTGTTCAACTCC
ATATTGATTGTGATAGCTTTGCTTTGGTGTGATGAGTGTTGTGGTGTTTGTATACAATGC
TTCCAAACATGCTTTCAAACTTCAATGCTTTTCAAACAAGGCAAAGCCTTCCCTTTTGTT
ATTAGAACTTGTGTGTTAAACTTTGTGGGAACGTGTTTTAAAAATGTTATACATTTAGAG
TATTAATTTGTGGTTGAGGGGGTATTTGTCTTGTTGTTTTAAAGCTTTAAGTCATTTGGG
GTTTTTATTAAAAAACAACATTATAAATCCTGTTTTGAATATAA