morexGenes - Barley RNA-seq Database

Contig contig_41458
Source Contig contig_41458
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41458 (10443 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_41458

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57145	2	1816 bp	MLOC_57145.2	Available	Available	LOC_Os05g39770.1, FRAME:-2, EVALUE:0.0, 13105.m04194 protein aminotransferase, putative, expressed
MLOC_57144	1	2051 bp	AK362365	Available	Available	None
CDS Structure of MLOC_57145

CDS Structure of MLOC_57144

Contig Sequence (10443 bp)

>contig_41458 10443 assembly3_WGSMorex_rbca.fasta
GGAGGGAGTATGTGTTATTGGTAGTTTTCGGCAATAGTTTGCTGTGAAAACTCTAGATTT
GTTTTTGTGATCACTTTCAGTTTGTTAGAAGTAATTCCATCTGCCACTGTATGATTGTCA
ACTTGAGAAAGCAATAAGCCAAGTTGTTTCTCCCGCTGAGACAACTTCATGGGGCTATTT
TTATTGTTGACACTGGTCATAAAAACCTTTGCAGCTCTTGGAGACAATGATGAAGAACTG
TGGTGAATATGTTCATTCTGAAGTTGCTGAGCTGCATATTTTACAAGAAATGGTTAAAAT
TGTTCAGAAGAAGGTATACTATCCTTTGTTCTTCTAAGTCTCTCCTTTATATTCTCTTTA
TACTAGATAAGAATCCTTTTGGCCAATCCCTGTTGTTTTGTGACTCAAACTCGGTGTTTG
AGCTGAACCATCACCTCTTCTTCAGGTGAACTTGCTAACTGTTATTGGGTAACATGGTAA
CAGTCATATCTGCAATTCATCCATTGGCATTGGCATTTTTGTGGTTATATTTCTTATTGT
GTTTTCTGTCTCACTTGATATCTTCTGTTTCTTTTTACTAAATGGAAAACAATCAAACAC
AATGCTAAATTTTTTTGGAATGTTTATTTTCTGAATATCCAGCACGATATGCAAGTGAAG
GATAAGATATTGATACTTCTGGACTCATGGCAAGAAGCATTTGGTGGACCCGGGGGCAAA
TATCCACAGTATTACTGGTCATACATTGAACTAAAGGTATGGCTGCAATCCCCCCCACAG
TGTGAAACCTCACACTTTTCAACAGAACCAGTCCACTATACATTTACGTGGATCCAAGAA
CATGCCCTGAAAGAAAAGTTTAAAGTATAAGTAGTTCGGCCTCATATAATTGCTCAAATC
TTACCAGTTTTGGGGACAAGCTACTGCACTTTAATCATATCAGTAACGCACCATCTTTTA
CAGAGGTCAGGAGTAATGTTCCCACGTCGTCCTATGGATGCCCCTCCAATATTTACTCCT
CCTGTGACGCATCAATCTCAGCCGTATGGTTCACCTGCATATCCCACTGGAAGTCTAAAT
GATAGAATGGCATCTGATGTTGAAACACTGAGGTTGCATTTCTTCTCTAGTAACTCCGTG
TTCAACTCCTTCAGCTTTTCTTGTCCAAGCTATCTGTTCTATCACTCTATTTAATGGTTA
TAACTTGTTAACTTTTTTCCCTCCAGTTCAGGGGATCTGGATAATATTAGAGATGCAACA
GAATTACTGAGTGATATGGTGAATGCTTTGAATCCTGCTGATCGCATGGTAAGCCAAATA
TTCAAAAGAAAATTGCATGGCTAGTTTTAGTGAAGTTCATGAAATAACCTATTCAATTAT
TGGTGATTCCAGGCTGTTAAAGATGAAATTGTTACTGAGCTTGTCAGCCAAAGTCGTTCA
AATCAACAAAAGCTCATGGGATTTGTCAGTTCAACAGGGTAAACTCATTTCTCCCACAGA
CGGCACAAAGAATATTTCCCCTATCTTAGTGTGCCGTGGTGTTTGCCTCAAATGAACTAT
AAGTAGTACTCCCTCCGTTCCTAANNNNNNNNNNTTTTAGAGGTTCCACTAAAAGACTAC
ATACGGATGTATATAGACATACTTTAGAGTACACATTCACTCATCTTGCTCCGTATGTAG
TCCCCTATTGAAATCTCTAAAAAGACTTATATTTAGGAACGGAGGGAGTATAAGCACCAG
CATGCACATGCATAAACATGGCGCACATTTTGTTTTCAGTTTTGTGCCGTCTAAGTGACA
GTGCAGTTCAGGTCACATGCCATCGAATGACTTTTTATGCTTCCTATTGTTTAGGAATGA
GGAACTACTGAAACAAGGTCTAGAAATAAATGACCGTTTACAAAGTGTACTTGCAAAACA
CGATGCCATCGCTTCTGGTTCTCCTTTGCCAGTTGAAACCCCAAGAAGAGATGAAATACC
CAGAGAGGATCCACCACCACAGCCATCTGCACCTCCAGTTGTTGCAGAAAATGAGACGCC
CGTTGAAGAGGATGAAGAGGATGAGTTTGCTCAGCTAGCAAGAAGGTAACTAAAAATAGC
TTTTGATGCACAGCCTGCTTATTCCTGAACCACAACTTATTATTTATGATATGTTTTGTA
TCTGTAGAAAGAACAAATCTGTGATAAGTAGCGACGAGGCATCATCAAGTGTTGGTGATC
ATGCCCTTATACCTGTTGATGATGCAACTTCTGAAGCCTCATCTTCTGTTGGGAGCAATG
CACTGGTCCCTGTTTCAGCTCCTGTCAGTGGTACTCGGACAAAAGAGCAGGATATGATCG
ACCTTCTAAGCCTCACCTTGTACAGTCCTCCTGAAGCATCTACAGATTCTTCAACTCAGA
GCCAAAATGACAGTCAGCAGACCGCTGTGTCGAACGGGTCACAATTACCGCCAAACTATC
AGCCTGTGGCATCGAATGGACAACATTACCCTTCGAACCACCAGGCATATCCGATAAATC
AGGGGTACACTCCATACAACAATTATGTTGCACCCTGGGCCCAAAGTGAACAGAGTGCAC
AGACTGGAGCATATCCAGCGAGGCCTCCACAATACACATCAAGCTACCCGGCACCACCGT
GGGCCATGCCTACAAGTGCGAACTCTGTAAATCCCTTTCAGCCTGCCACATACCAAATGC
CGAATCCTCCTGTTGCTTCTGTTGCCTCAACAGTTGCCTACCCGGCTCCTGCAACACCTT
ATGCTTCTCCATTGATGCAACATGTGCCATCTCCAACCCCAAATCCCAGTCCGGTGCAAC
AGCACAGCTCTTTTGTTTCTCATGCAAACAACGCCCTCGCCATTGTTCCAGATGCTCGAA
TGAATGGAAACCAAAGACCAAAAGAAGCACCAGCGGCCACAGCCAAACCCTACTACATGC
CAGACAATCTGTTTGGTGATTTGATCGATGTGAAGAGCTTCGGCGCCGGAGGCAAGACAA
GCAGATCGACGAATGTGCCTAGTCCAAAGGGTGGTGGTCAACCAATGATCGGTGGAAGGA
AATAGGTCTCGCGAGTTCCAAGTTAGCTAAGGTGACGTTTGGTTTGTACATTTGCTGTAT
ATGTGTTCAGGTCATATTTGATTTTAGTCGGTGGTCGGTGAATTTGTATTTATATTCTAA
AGAGATGGTAGAGCATAATTGCTGTAAATGATTTGCTTCAACCATTGTTCGTCTCTACTC
TCTAGTACTCCATGGCTGATTTGTGTCATCATTCAGACGTGTGAAGTAAAATGTTTGCTA
TCCAGTTTTTTTAGACGAAAGGGATTTCCCCCAATTTCTTCATTAAGGAAACAACAAGTC
TTCTACACAGCCAGCTAAGCAACACCAACCAGGGAAACAAAACGAATTCATGGAGGCAGC
ATATATCCTTGGGAAAGAGAGATCTAAGACTTTGTTCTTGGATCCATTTATGCTCCCAGG
GCCTAGTCTTCGCTTCACGTATCGTTGGACCAGTAGGCAACTTCTATCCAAAAGCGAATA
AAAGTAGCGGTGCACCCAATTATGCGCTGCTGCTGCTGCTGTGCATGCACGCATGCGGGG
CATCAGCTGATTTGTGGCCACCGGAGACGGCCGGGAATGGATGCTGCCGACCGATCGAAA
CGGCCGGCCGTTGCCTCGGATCATCAAGGTCTGTTTGCCGATCGGGTCGGTGGTTGCTTT
GTGTACGGCGCCAATTAGCGAGCGCGTAACAAATTCAGGGAGCGGCTTTTGTTTTCATAC
ATTCATTAGAGCATCTCCAACAGTGTGTATGTTCAATCGTTGGTATAAGTGTCCACGTCA
TCATACGAGCTCTCCAATGGAGTGTATGTTAACCGTATGCAAAATAACTAAGCGGGTCCA
CTAAATGTTGAAGAAATGGCCATGCTTGCCTCGGAGCTTGTGCCTGAACCGTTGTTTCAA
ATTTATATGATTTCATTCTCTCTCTTCTTTTATTATGTGCCATGTCATCAAAACCGTCTA
TGTGACAATTTTACCGACGATGATCATACGACTATTGGAGATGCCCTTAGCCAGCCTCGG
ATCATCAAGGTCCGTTTGCCCTGATCGCCGCTGCTTTCTATCCTATGCCCATAAAGTAAA
CTAATGATCTAAATGTTTTTATATTAGTTTACAGAGGGAGTACTCCGTATAAGGCATGGT
GTCTTGGAGTCCCAATCTTCCTCACCTGGTCTGGTCCCTATCCTTGTTTCCATTCTGCCC
TCACCCTCTGAGCTGAGCTCACCTCCCCCGCTTGTTCTATGGAGCCCGTGGTCCGCGGCC
GCCCTACATCGCTGTGCCTGTGCGCCCGTACGCTGCTGCTGCTGCCCTCCGTTGAGTGCC
AGCACCCGCCCAAGCTCAGTGTGCCTGCTGGGCTGCTGCCCACCGTGGGCCCTCTGCTTT
CCATCGCCGAGGGTGACTCTTTTCCCGCTGATGCCCTCATCTCGATCGGGCCATCTGTTC
AAGGCCATCCAAGCACGTGCCGCCGTCTAGCGGCCTTTTTTCGCCTGTTATTGCTACAGA
TTAAGCACGGGGCTTGTGCTATGCTCCCTCCCCCTGCTCATGCGGCGGCCATCTTCTGCA
ACTGCCGTGCGCCGCAGCGTGAGCCTGGAGATGGTGATCTCCTATCCTCGCCACCCACAC
TGCAGTTCTTCCCCGCAATTTCTAAAAGGTCTCAGATTTAATTAAAAACGAAGGGAGTAG
GGTAGAGGGAGTGGAGCGTTCGTAAATATAAGTCTTTTTAGAGATTTCACTAGAAACTAG
GTACGGAGAAAAATGAATGAACCTACACTCTAAAGTATGTCTATATACATCCAGGAACCC
CTAAAAAGACTTACATTTAGGAACATAAAGAGTAGATAGCAGGAAGAATGCAGGATACAA
TAAAACACATCTGAATATCTTTATTACCAAGAACTTATTGGTCATGCATACAGTTTACTA
CTCAAGGCAGCAAGCCTAATAATGTCGACGAAACACGGATCAGATGTGCGCACTCGAGGG
TTTGCAAGACAGAACACGAGACAACGAGGTGCTGTCTCGCAGATCGTCTCTTATTTATGG
ATGCTGCTCCCCATGCTAAGCCTGCATGAGCTCAGTGCCTCTTCACAGCTTCGACAGCGC
GATGTCCATCACCTCGATCAAGAAGTCTGTGACGCAAAGTTACAGTCATGGATCAGAAGC
CAAGATAAAACACATGCTACGTGAGCATTGACAGCTGAAAACCAGATCTTACCGGAGTCC
TCCTTGGAGAAGCACAACGGCGGTGTCACCCTGAACACGTTGCCGAAGAAACCGCCCTTC
CCCACCAGCACGCCCATATCTGTTCCAACAAGAACGGACACTCGGATATCAGATACAAAG
ATTTGCTACTTCAGTTTTTGAACTGCGAAAGCTCAAGAGAAGCGACAGAGCTCATCAGTT
AGTGTAATCAATCACCTTTCATGTGGCTCATGACCTGCGCGATCTCAGCCTTCGCCGGGG
TTTTCTTCTGCCGGTCGGTCACCAGCTCAACACCAAGAAGGAGGCCTTTCCCCCTAACAT
CGCCGATGACTGCACAAGCCAGATGTAATTGTAAGTAACAGAGGTATCCTCGAGGTATGT
GTTTACCCACGATGTGATTTTATCTAGCTACTAGTACTCACTGTCATGCTTCTCTTTCAG
AGCGTTAAGTTGATCCTTCAGGTAGGAGCCAACAACGAACGCATTTTCCTGGAGCTTTTC
TTTCTCCAGCACTTTGAGAACAGCGTGGCCGGCAGCAGTACTGACAGGGTTGCCACCAAA
GGTATTGAAGTAACTCCTGCGGGTTAACACCTTAGCGATCTCAGGCGTTGTAACAACCGC
TCCTATCGGTATTCCATTCCCTATACCCTGAACAGGAATGACAGGAAACATGTCAGCCTA
TAGTTTTGACTCTTTAAACACCGGGGAGCATGAAATTTGAAGTGTGAAAAGTGTGGAGAG
GCTATCAGGACTCACCTTTGCCATTGTGACTATGTCCGGGATGACGCCGTGCCCTTCAAA
TCCCCAGAAGTGGCTTCCAGTTCGCGCAACTCCTGCCTGAACTTCGTCAGCAATGCAGAG
GCCACCAGCTTTCCTTACCATATCGTAGGCCACAGGTAAGTATCCTGGCGCCAGTTCCAC
AATTCCACCAACTCCCTGCAGAGAGGAGCATTACAATTGTTTCTTCAAGAAAACTCACTT
TCTTTGAACATGATGTTACTAATGACAGTGTTGATATTGGCATACCTGTATGGCTTCTGA
AATGAACCCTGCAACTCTTCCTGTAGTCCCATAGTCAATGGTTTCCTGAATATCTCTGGC
ATATTTCTCTCCATCTGACCCGAAAGCGCCTCTATATGGGTCTGGATTAAGTGCATGGTG
CACTCCCGTCTGGATGCATCGTAAATCAGTAAATATCACTAATAAGCCATTACATAGAAT
GAGGCATCTTCTGAAATTTAAATTTCCTCACCTGTACAACGTTGAATTTCCAGTTGCATT
GACCAGTGGCACCCATTGTTGCAGCTGCATTCCCGTGGTATCCATTCCTAAGCGAAATAA
TGTCATGGCAACCAGTGTAAAGCCGTGCGATCATCAGTGCAAGCTCATTTGCCTCCGTGC
CAGAATTTGTGAAGAAAACAACCTGAAGAAACCAAGAGAACTAGACATGAGGCTCGGTCA
ACCAAACAAAATAATCTGTACTTTCGTCCATAAAATTCCAAAGTACTTTCAGGTCCAGAA
ATGTGTAACGTTTTATTAGGCTGAAAGTACCTTCAGATCACCGGGCATTTTGGCCGCCAA
AGCCTCAGCAAAGTCTGCAATTGCATGATTCAGATACAGAACTGTGGAGTGTTGTATCTT
CTTCGCCTGGTTGACTATGGCTTCAATCACATCAGGGTGGCAGTGCCCACAACAAACGGT
AGCAATGCCACCAAAAGCGTCAAGGTAGCGGCGACCATCCTCATCAAACAGGTACTGCAT
CTTTCCATCGACTATGTTCAACTGCAATAGTTGTTGTGTGCAAAAACAATAAGTTTTCAG
TGATGAAATCACAATTTGTCTTGCATGATACTAGCCTTCCTCACTTAATTATCAAACCAC
ACTCTTGTCCTGGTCAGGAAGCTATTTTTTTGTATTCTGCCCTCTTTTTACAAAAGCATC
TTTACAAGAATTCAAGGGGATCTGAAAGAGCTAGCTGGCGAAAGTGTTCCCTCTTACATT
TTTTTTCTTTGTGCCTTGTAAATCAGATATATCTTCACATAAAAATATATTTAACACGTG
ATATATGTGTTGCTCTGAGTATAGCACGTGAGCTCCAAGGTTGGTGGGTGAGCCGTGAGC
ATGTTAGGTACACAACTTTTGACACTATCTGCAGAACTCCTATCCTGACAGTATTTTATT
AACTTGGCAATGCATGTGCAGTTCAAACACAGTATGTTGTCAGTGATCACTCTCTTTATG
AAATACTATTATACTACTAGTGCTCCAGCCACAGATGTAAGATCTCAGAGGAGTTAGTTG
TGCAAAGTTGCCAGTGGTAAGACACAACCAAAAAGTTTTTTGCCCTCGATTCATTGGGGC
CAATAAAGCATGGCTACACTAGTACAGAGGTAGATCCAATGGAGTGCACAACTCTGTTGG
TACTACTGTAGCAACAATCTTAGCTCTATGATTCCCCTTTTTGAGAATCTTAGCTCTGTG
ATTCCCAGATCCCACCAATCACCATAATTCGGGTAAGGACTAGCCAAAAAAATACCATCT
TCTCTCACCGCGAAACTGCTAAAAGCGACCAGGACAAGAAGATTTGCACAAATCGTTTGT
CTGACTATGCGAACGCCGCTCATCATTTGAACTGAGACATGTCACATGTGCTGTTGGTGT
TCGGCGATTTTGGAATGGGGAATTAAAGCGAGCTGCCCGATTTAGCATGTAACAATTTCG
CTTGAGAACAGAAATGGAGATGGAAATCAAACTTCGTTTCTCTTTTCTTTCTTTTTAAAT
TAAAATCAAATCCGTTGGTTCGTTCCCAAGAAAATGGAGGGTGGCGAGGGCGAGGGGGGG
GGCACGTACGGGGCGGTCGTAGAAGTGGAAGAGCGAGGGGCTGAGGAACTGGGCCCGCTT
CTGGGCGATCTCCGCCACCCGCGGCCCGTCGTACGGCGGCGGCGTGTACGCGAACGGCGG
CATCTTGGGGGCGCCGGCGCCATTCTCCGGCGCGGCGGCGACCGCGGCGGCGGTGAGGCT
GGAATGCGCCCGGCCGGGGGCGAGCGCGGCCTGGAGGAGCCGCCGGGAGGAGGCGAGACG
CTGCATATCTGGCCCTGTTACCTTCTCTCTCTGCCTGTGGACTGGTTAATGGTGGCGATG
GCCGTCGCTCCGCTATAAATAGATGGACGGGCCGGTGATGGAGGGGTGTGTGAAATGACG
AGCGCGCCCTTTCCTAAAAATATTTCACGGGAATATCGTCTGTGTATCACTGAATGATAC
GCACAGAGAATAACATGCCTAAACAGAGAGCACCAATCTTTTTTACCATTATACTGAATC
ATAATCATCTCCTTCATCAGTTGCAAATATGTCTCCTTAAACGGTGCCTTACTGAATCGT
AGACATACCATCATATCATCACTGTCCATGTTTGTAGCTGTTTTAACGAGAATATTCTTC
TTCGTAATCACAAATTTATCACCTTCTCAAATCACAAACATAGCATGGTGCAAACACTAA
AGCGTATTACTCCCTCCGTATTTAAATATTTGTTTTTTAGAGTTTTTATTATAAACTACA
TACGGATGTATAAAGTCATAATTTAAAATGCAGATTCATTTATTTTGTTTTATACGTAGT
CTACAGCTAAATCTTTAAAAGATAAATATTTGAAAACGAAGAAAATAGTATTTTTATCAC
ATTTATGTATATTCTTTTATTTTATTTTCAATGCAATGTACCAGTATTCAGGTAGTATAT
TCAATATGTCACCAAACAGATAACATGTTTTTCTTTTGCGAGCAGAATAAATAATATGTT
TTCAATGTGGAATCTCAGTCGCATCCCAAGAATTTAATTGGCTAAAACTACCACACGTTG
GTTGAATTGGATCGAGTTGTGAAAATTATCCAGAAACACATTTCTCAATTTTACTTGCAT
AATTTAGGGCATTTTGAACTTGATAATATCAATTTTATTTAAAAAAATCATATGTTCTAA
TTTGCATGGCATCCACGCATTTCATTATTTAACTTTGAGCATCAATTCGACAAATAAAAC
ATAGATTATGTGGCACTAATTATATCGTGAATTTACACTCAAATAAAGTTCCCAATAACA
TAAGAAATGGCGAGCCTACTCCATGAAATAAAAATTATAAAAGAAAACCAAGCCCAACTT
AAATAAATAAAACGAGGACGTCACACAAAATAAGGACAACATAATATCACAACCAAGTTT
AAAGGAAACTTCATGGAAACCGTGTTTATACGGGATGTTAAGAGGGCGATGTTTCATTGC
TATGCGAAATTCCGAGTTCAAATACATTACCATTTTACGAGTTATGAAAAAACAAAATTA
GAAATGAATAGTGAAATTTGTTGTTCGACACTATTCAGTGTCAGTTTTGTTTTTTACGGA
CCTCGTAAATGGTAATGTCTTCAAACTTGAGAATTTCACATGCTAATAGAACATGACACA
CTTAACATCTTATGTTTTTTTAGATTATTTCAAAACTTCAAAACATTGTTTCCACGTGGT
TTTAATCAATTTCCATCAAAATTTGGTTATCACATTCTCTCACTAAAGACAGATGATGTA
TTCAATATGTCCTTTGTTTTTGAGGTGTTGCATTGGCGGACTAATCTCACATTCGATGTT
GCGAGTGCTTTTTTTTGAAAAGGATGATGATCCCGGCCTCTGCATGTGGATGATGCATGC
AATCATTTTATTAATTACTCATAAAGACCAAAGCTTAACATCTAAAGTTGGAATCCCTAA
TCAAGCCACGATGTCGAGTATGGGGCACACATCGGTCTGACACACTCTTAGAGGCGGTCG
CCACCATCTTCCACTGATCCAACTTCAGAACATGAAGTGACGCATCAGCCTTGCAAGGCC
CGTTGTCGATGCCACCACCACGCGAGACAGCGACGTCCTCCTGCGCGAGTCCGTCAACCC
GCATTAGACGCCGAGACCCCACTCCTCCATGTCGTTGATATCCGGCATCGTCCATGCGAA
AAATGTCATCATCGTCCAATCCGGGAAGACCCAGATCTATCCCAAGCATGGTGTCGCGAC
CTACAACAATGATGCCTCGAGAAGAGAATGACGTCACACACGTCGTCATCGTCCGCCATG
ACCGTAGTCGGCGTGATTTTCACCAGGCGCCCCCCCCCCCCCCCAGCCCACCGCCCCCCC
CCC