| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_41456
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_57142 |
9 |
2031 bp |
MLOC_57142.7 |
Available |
Available |
LOC_Os03g52450.1, FRAME:-2, EVALUE:2e-120, 13103.m05712 protein GATA transcription factor 25, putative, expressed |
| MLOC_57141 |
2 |
1004 bp |
MLOC_57141.1 |
Available |
Available |
LOC_Os03g52430.1, FRAME:+3, EVALUE:7e-75, 13103.m05711 protein mitochondrial carrier protein, putative, expressed |
CDS Structure of MLOC_57142
CDS Structure of MLOC_57141
Contig Sequence (10304 bp)
>contig_41456 10304 assembly3_WGSMorex_rbca.fasta
GCCGGGGACAAGGGGCTTAGGGTAGTCTTGCCCCCATCCTGGGATGTCCATTAAACTACT
TGTAACCTGCTCTAATCGTCTCCTAGGAGGCTGTAACTTCCCATCTTTTCAATACAAAGA
AACGCAAATCTCTGCGTTTTCTCGAAAAAAAGTTTCAATTAGTAAAGATGCATATGTTTT
GGAGTGTTGGTTTCTGTGATATGGTTGATGAATACATGCACTAATGTTTATTGCTGTGTC
ATGCTTGAAAGGTCACCCATGGCGCCATACAATTCACGGCCTATGAGGAACTTCGCAAGG
CTATGATATTTGCCAGAAGTAAACAAACAAGGGGAGATGACAAAGGCAGCGAGGATTTAT
TGGTAGGCACCAACTGATTGCATGTGTGCTCAGACACTAAACATCTAGCTTAATTTACAG
TATAGACATTCTTATGTTTTCCCTGGATAAATCTGTTCTGATGTTTGAAATTTTTCTTAA
ATTAGGTTGCTTAAGCTTATGTATGGCCATCCTTTTTCTGATGCTCCCCGTTTCTTTTGG
CTTGCCATGACATGATACAGCATGTGAACTGTGAAACATAGGAGGATTTTCTCACTTGTG
AAGATCGTCAAGTAGTCAAATATAGGTGTTACGTGATATTGTTCCTTAGAAACCCTATTT
TTAACACCAGTTACATACAAAATTGTATGATGCATAAGCTGATTCAGGGCAATTAATATT
CTTAGAACATTTAGGTAAAGTTATGTCTGCTTTCAAACACAATTCTCCATCTGCTAAATG
TGCAATTAATATGTCTGATATGCATTTGCCCTCATTATCAACAGAATTCCGTTGATTATG
CGGCACTTGGCGCTGGTTCAAAATTATCTGCCATTCTGCTTACTTATCCTTATCAGGCAA
GATTTAACTTTTGTTTATTCCCATCAATTTCATAAATGGTTGCTGCCATCTTACTATACA
TACCAACAATACATTTTTTGGATTTGCAGGTTATCCGAGCCCGCTTGCAGGTTGGTTTCA
TATTTAAAGCTCTGTGCCTCATTTCTTTGGAGTTTAGCAGCAATAATAATAGTTCTTGTA
TGCAACTTTTCAGCAACGGCCTGGTAGTGATGGTATCCCAAAGTACTCAGACAGTTGGCA
TGTAGTGAAGGAAACTGCAAGGTGAGGGTCATTTAAGTTTCGATTAGAGAATGTTTTGGA
CCTCAGGCGGCATTATCATTTCACCGGGTCTGATGTTAAGCCATGACTTACCTTCTTATT
GTCTTATTCAATATGCACCTTACCATGCTGTCTTTTCTCAAGCTTGGTGTACACTTTAGC
CCACTGATTATCTATACTCTTCATTAATCTGTAGAAACCTGTCATAATTGAGGATGCTGC
ATGCCATGTTTTCTGTTGCAACCTTGCTGGTCCTGAATGTTGGTTTGTGCTACAAATTTG
AGTAATACTAATGCCTGTTCTCTGAAAATTCTCAATTTCGTCTGCAGGTACGAAGGTGTC
CGTGGGTTTTACAGGGGCATCACGTCCAACCTGTTGAAGAACCTTCCAGCGGCTTCTGTG
ACGTTTGTGGTGTATGAAAATGTTATCAAACTATTCAGAGCAGCCAAGGAAAAGACGTAG
TTCCAACTTTCAACTGGAGCCAGGAGAAACATAGGAGGAAATAGGAAAGATACTACTGTT
CCATGCAAATACATAATCTGTTCATTCACCACACCATGCGAGCTCGACGAGATGTTCCAT
CACATTTCCCAGTTCAGCTCTTATTCATTTAACACAAACGGGATTTAGTTTGGCGAACTT
GTTTTTATTTTGGGTAGAGGAAATTCATTTTCTGTTTCTTCACGAAGAAATGGCTCGTTG
GTTCATGTTGTCCAGTTGAATGCTTGTTGGAGATGGAGAATTGGTTCGATGTGTTGTTGA
ACTTGTGATTGTGTGAGTTATTTTTTACGGAAACGCTTGGGATGACCCGGCTGGTTTCTG
GAGTCCAGCAACACTGTTTTCCCCTTTCCTAAAACGGCAAAATCGACAAAATTGACCCCT
AAACCAAACAAATTCACAAATAAGGCGCCTGACTGTAAGGAGTCACACTATCTTATATTA
AAACTGATGTAACTTTTAATTCGTACATCCGATGAAAACGTGACTTATATGAATATTGTG
TAATTTTTTGTGTTCTACGCAATGGTGGCATTTCCAGCTACATTAGGATAATTTTTTAAT
AAAAAACAAGTTTTGCAACTGAGATTTGTTGTAGGAACGAGCTTTGCAACAAGACGTTTG
TGACAGAAAATAAATAAATAACAGACGACTCACAATTATATGTCATGTGAGGCGACGGAT
CTTTTTTAAAAAATCCATGAAAGGATGCGTAACAAGCCTTTTATTTTAGAGAAAAGAAAA
TGTTTGTCTGAGAAAACATGACTCGTGTTGCAAAGCTTGCAAAATAACACGAGCCTTGTT
GCAAAGATTAGCAGAGATCGGACCCGACGCGTTAATGCAATCAACGTGGAGCGGTTGGAT
GATTCCTCTCCCTTCCTCTGCCGGACTACAATTCCGATTCGGTATCGGTGCTTCACGTCC
GAATCGAGCCCGGCCCTCCCCTGTTTCAATCGCCATCTGTCTTCTACAAAAGGTGCCCCA
GACCCGCAGGTACTTCCCCAAGCAAACTCGTGAAGGTGAAGGAACACGTCCACCGCAGCA
GCCTCCGACTCTTCTCTGTTCCACAGCCGAAGGCAAAGATGGCCGCCGACAAGGAGCACG
TCCTGCTCCGCCAGCCGGACAAGCTGGTCGTGCTCGCCGAGGTCCCGGCCTCAGGCTCGC
GCAACCCGCAGCCGACGGCCACGCTCCGGCTGCTCGTCGAGCTCTGCGGCGACCACGGCG
CCGGCCCCGCGGACGTCGACACGATGGAGGACGTGGCCTGCCGCGTGCCGCTCGCCGACC
TGGGCGATTGCCAGGGAGCGGCGGAGCGCGCGTTCAAGGACCTGGTGGCCCGGATCGACA
ACCCGGCGCTGCGCCCGGAGGTCGCCGCGGAGATCCCTGCGGCCGCGGCGCGCGTCCGGG
CGAGGTGCGGGGCCGGCTACGGCGTGGAGTTCCGCCTTCGCGTCGTGTTCGTCGACGGCG
CGTCCGCGGAGCAGGAGGACGAGGACGACGAGAGCGGGAGCGACATGGAGTTCGGGGAGT
TCGATCTGAGCGGCGCGCGGAGGTTAGGCGGCCAGCAGACCGACGCCGGCTACAGCTACG
GTTACGACTACGACGAGGACGACGACAACGAGGACGGCTGCGGCGCGCAGTTCACGGTGA
GCCCGTACCGCGGCGCCCTCGCGCGGGAGGGAGGAGGGGCGCCGTCGTCGTCGTCCCTGC
TGCTGTCTGGCTTTGCGGCGCGCTCCGACGGGCCCGAGCTCACGGAGGAGCACGAGCTGA
CGTCCTACGACATGCAGCGCGTCGTGCGCAAGGCGCTGGGCGGCGGCGGGAGCGTGGAGG
ACGACGAGGCCTACCTGCGCGCGCTGGACGGCGGCGCGCCCGTGTCGCCGGCGTCGCGCG
CCGCCATGGTCGGCCAGGCGCTGCAGTCCACGAGGCAGCAGCAGCAGCAGCAGCAACAGC
GGTCCAAGTCGCCGAGCCCCATCTTCCCGATGCGTACCGGATTCTAATGCAAACCTGTGA
TGCTACTCTTATGTTGTTCGTGAAGGGCTAAACCTGTTGCGATTTGTATGTCTGTAAACC
TATTTTGTAGCCTTTTTTTTTGCGATGCTATTTTGTAGCCATTCATTGAAGTTCGATTCA
TATCTTCTGCTATGTTAGTGAAGATATGTTGATCTGTTATCAAAATCATAAGGATCTGTT
TCCCCTTTTTTTGATGATGATGAGGCAAATCACTAGCATACAACTGGCAAGAATGTGATG
ATGTGATGGATTGCATTGCATTGCATTGCTGAATTCTCTGCATTGCAGAACTGTTGGGTA
TACAATGTAGTAATATAATACATGGAGGGGATAAATACGGCATGTTGTTGATGCATGCTT
TAGTTAGTTTTGTTGCGTTATACATCATTTCTAAAGTCAGGAAATATCTGACAAAAACCT
ATGTCTCAGTTTATATACACTTGTCATGAATCAGCCATGCTGTCGCCTTCGGTCGCCGGG
CGCAGTTCCGGTTTCTGTTCTTGTTCCGGACTCCTGATGAAGAAAGTAGAATCCCCACAA
AAGAAAATAAGATCAAGAAAATAGAAGGTCAGATGATGGTACAGAATTGGCATTCTAATT
GATTTAAATCCTGGCATGAGGACCTTGTAAGATATAGCTGCTAGACAGTGATCTGAGATG
CGGTAAAGAAGGCGTGCTTACATCTCAGAGTCCATTTTGACCGCGGTATGGTTATGCTCA
GCACACACAATTGCTTTATCATCATCCACACTTTCCTGTGTAGGAAGAAACGCAAACAAA
CTGAACATGAAATGTTCAATCAAATAAGTTAAATCACAGAACGCACCATTTTACTCGGAT
TGGCGGGATGCTGCACCGTCATCTTTGGGGCATTCAAAGGACTTCTCAGAGTACCCTGAA
ATTATCTGAGGATAAGTAGTAGCAAAGTAGCAAACTGCTAGCAGGTGTCATAAACATCAG
CAGGTGATCAGTTAGGCAATTTGTAAACCAGTTAAACTTCAGGAATTTAGTTCGATTCAC
GAGCATGCTGCTTTTGCTTTTTTTCCACACCTGAAAGAAAGGAAACATAACAGGCATCAA
GGTTGCTAAAGTACCTTATTTGCCCACATCAGGCCACAAGCATTACAGAGGGTCCTTGGG
CCAGCCGGCCCCCGACGCATTGCTGGAGTAAGCCTTGAGCTGACACCACAGTTTTGACAA
CTAGGAAAGCAAACCAACATTAGCCCATAATAAACACAGGGAAAAACCTTCTGTGTATGA
AGTGATGAAACGTGATTTGCACGTACACATGTCATGACAACTCACTCACTGGGATTCTCG
GAAATGATCATCCTCGCCATCGGCTGCAGAGACACAAGCTGCAGAAGAACTTGCAGCATC
ACCAAAATCTGCCCTTCCAGCAAACTGTCCTTTACGCCGTTTCATCCTGCCAGCGATAAT
TAATGAGTATATATGCTGTGCAATGTATGAGATAAATAATCCACAACGAAAAAATAATCT
CAAGGGAAATCTCTTGACCACCAGGTATGATTTTGTATCAGGAATAGTAAACAGAACACG
ACTACCTTCCAAGGTAACAGTAAATCATAACTGTAGAAATCCGAATTAGTTTCTTTATTC
AGTGCTGACTCATATAAGCAGCAACGTGATATTCTTCCTAAACCAACAAACATCAAGAGC
TTGATAACCAAGTGCAATGAAGTGCTACAAAAATTGCCTTTGCTTATGAGGACTATGAAA
ACCTATAGCAACTACACACAAATAGACTAGTAAAATGTACCAGAGCCAGACTGCTTTAGT
CCTAGTAAAAAAAAAGCCTCAGTGCACCAATATTCTCAGAATTAACATTCCATGATCCAT
GTTTCCGGACTATTACATGTTACTAGTACTTAAACTTTTCCTCGGACATTGGTGATTGAG
GAATTGTTCAACTTTTGCTCAGACATTGGTGGTTGAGGAATTATTCAAGACTAACAAAAT
TGTCTCAGATTGGTAGGCTAGACATCAAACCAAAGAGGCCGATGAATCAGGTAGAATTCT
AGATTTGTGCCAAAGACGAATGTGGCATTGCGAATGCAGAAAGCTGGAGTACAACCTCAT
TAATGTGGTCTAAACGTGTGATTAATAATCAAGGCCTGCTTGGTTGTGGCATAACGAATG
CAGAAAGCTGAAGTATATCCCCCTTCATATGATCTAAATGTGTGATGACTAATCAAATCC
TGCTTGCTTCCATAATGCAAAAAAGCATTTGTACGCTAATAACTCTAAGAAAACACCTAC
AAGAGAATGGGCATGGATTGAGTCTGTACTTTTGGGCAACTTCCTTGCGCACTCCGTATC
TTATTTTCTTATCAAAACATCTTTCCTTCCTCTTCTCACGAAACCTCATTAAGGAAGCAA
CCCTTTTGGCAGCCACAGTTGTACTCTGCAGACATGACAAAAAACTTAGAAACTAAAAGC
ATTCACACAACCTTGTTGCAGAGATTGTACAGCTGATGGTACCTTTTCACCATATGCAGT
AGGCCCAGCCATGCTTACTAAACCAGTAGGCAGCTCACACCCTCCAAGCACCAATAGAGC
AGCTTGAACCTGTATAACACTAGGAAAATAATTAATCAAGTAAACTTATTACAAATGACC
ATGAACTGATCACCATAAACACTTGAACGATGATTTAACAAATAGTGATTTGATCATGCA
ATCACCCTTGAAATGTAATATGGCTGCATCATAACTGACTCATGATATGTTCAGAGACGT
CTCTCTCGGTGGTGCCTAGCACTTATGAGTGTAGTGTTGTAATTTTGGGATGTTGGCCCT
TCCATGGGCTTGCACATAACCATTCCTTCGGACAACGCATCAAGGCTCAAAGCTTTTTGT
GTTTTGTCAAAGGGAAAAATAACATGGGTGCACACGAACATAGAAAATGGACTTCTGTTT
TTGTGCAATTCGGTATAACCACATAGGAGTGCATGGCATACAAACATCGTTTAGACAGTG
AATCTTTTGGCAAAGCAATAACTGTGCCCCAAAACCATCAAGAACCGTACTCTAACACTG
AACCATGTCACCTGCAAAATCACTGACAGATGGATGGCCACAGAAATGCAATAAGGAATA
ACCACAAGCAGAACAAGAGAAAAGGGTGAGAAATTTGAGAACAATAAAGGACAACAATCA
AGAACCGTACTCTAACAACAGCAGAACAAGATACTAAGCTTTGATAATCTCCATATGTCA
ATTAAAAATTCATTCAAAACAATCATGCTTGGCCAAATCTCGCAGCATACGGTCCACTAT
TCAGCAACCATTCATAAGCACATCAAAGCAGGTAAAAACGTCCGAAATCTATCTAATAAA
ATGGCACACTTTAGCAATCAAGCACAGCACATATTACTAACAAAAGGTAATCGAATGTAA
GCAGATATTAGCCCCTTTCCTGAAAGCTCGAACGACAGAACAGCCACAGAGGACACATTC
TTGGCGCAATTCAATTCAGCAAGGGCGCAAACAAACCCTCCGCTGCTTCAAGTATTCAAT
TTCTCCATAGTACATAACCAATTCCTCTGAAAGTTCAATCAACAGAACTAAAAAATATAT
ATTTCTACAGATATTACCAGGCTGAAAATCGAGGGAACTGTCTCCATGACGGTGCAATTC
CACTGCAGGGGACATGGAAATCGATGGAACGATCGAAATCTACCAACAAACCTATATTTT
CTGGGCGCAATTCGGAGCCCGCGCTCGCAGACAAAGTCAACACGGTCCGAAGAAACAGAT
GGGAACAAAAATTGAAGCGAACGGTGCAGAAGGCGCGACCTTTTGGGGCGGGACGGGGTC
GAAGACGTAGACCTCCCCCTGGTACACCAGCGTCAGCTGCTCCGAGGCCGCGCTCAGGAG
CGCGTCCGCCGCCGCGGCGTCGTCGTCGCCGGAGGCATCCGCCAGCGGGGGATCGTGGCC
GTCCGCCGCGGGCTCCGCCGCCATCGGCTGGGGATCGGACGGTTGGGATGGGCCGGGACC
CGGGAGAGGCGGCCGGGCTCTCTCGGTTCGCGCGCACGTGTGGGGGATGGGTGGGAGCCC
GCACGTGTGATGGATTTATGTACACGGGCTTGCGTGTCCCGTCGAGGAGAGCGTGTGCGT
GAGGGCTGCATATTTTGGGTTTTCGGTTCTAAACTCGGGGTATCTATTTGATCCGTAGAT
TGCTTCCGGTATCGAGGGGATGATTTCATAAATGTGGATGCGTAAACATGTCATTTAAAG
ATAGCAGCATATGTCTATTTGTATTTTACTTTTCATCTAATCAAAACAATTTAGTTATAT
TTATATATATTTCAAGTTGATCAGACTCTAAGCTCAACTAAAATGACCGTCGACATCCGT
TCCTCATCCCAGGCCGGCCATGAGCCCCCAAAAATGAAGCACCACCTCTATTTGCTCTGC
AACCCTTCACTTCGATGACATGTCTTCCCCATGTTCGACAGTCCATTCCTCATAATGCTG
AGAGCCCTAGAGGTATATGCTTCACCGAGAGGGGAATAATAGCCTATGTCTTCTCTTTAT
TCGCCAGCGCCGCTCATCAGAGTGGCACCAGAGGGATATGCTTAACCGGACGAGAAGGAT
GGTCTTCGCTTCTGTGAAGCACGGATCAAGGCTGTTTTTTTGGAAGGGGGGACGGTGGTC
CGCGAGTAGGCAAGACATCGACAATGCACGCCGGCGATGCGACGACGGTAGCCTTCGTGG
GACCCAAGTGGCAACGCCTTCCCATGTTCTACTTTTCCTCCGCGAGGTGGCTTGGAGCGG
CGAGTTGCTGCGGGAGGCACCCGCTTGGAGCCTCGCCCATGGTATTGATGGCCTTGAGCG
GAAAGCAAGGTGGAGGAGAGAGTTGCCTAGCTCGTATCCGACGGGCTCGACGCACCATCC
AGACGGCTTTTATGCGGGAGAACTCATCTTCCTGCTCGCCGGCTGTCACAAAGAGTGGGA
GATGGGGAGCAATGTGTGGTGCGATTTTTGCCCTGCGTCAGGCGTTGTTTAAATAGCGGG
TGGGTGCCCGGAGCCAACCGACATGTGTTTAATGTCAGTCCTCTAGAGAACGAACATTGG
CCGGAGTAGGTTTCTGAGCATATGCGCGAGTTTAATGGAGGAAGGTATGTAGTCTCCAGC
CATTTGAATGTGGTGGAAAGGTGTGTTCAGTCAAGGGTGCAGTGGGCGACGCTCTCTCGG
TCGACGCACCGCTTCAATGTCGGTAGTGATAGGTCTCATTCGCTCTGGGCCAACATCAAT
GCGAAGCAGCCGCTATACATCAGCATGAATGCGGGCACGTGGCGAGGGGCTGGAATGCAC
GCGGGTGAGGGAGGAGGGTTTTGAGTGGGCCATGTTGCTAGACGCAGACGTGTGAGCGGT
CTGGACACCCGCAAACCCTCGCCCCACTTTGTCTCTGGTTTGCAGCGAAAAACACGTTCA
GAACGGCCCACGGACCGGTGCGGGACCGCGTTCGATGCCAAAACACATTCGAACCGCACG
ATCTGAACGGTTGCGAGTGGTTTGAGGTTCGGCGTTGGAGATACCGTAACGTCTCTTTGG
TTTGACACGCATGGTGGTGACGTGAGGAGGGTTTCGACGCCATCATCTAATTCAATTTTT
TTTAAAACTTGTGATCTATTCATCACACCATGACAGTACAAAGAACACAAGAAATAATAA
TAATAAACTACATCCATATTTGTATGCTACTTAGCGATGACTACAAGCACTTGAGCAAGC
CGATGGCGTGTCATCGTCATCACCCTTCTTCATTGGAGCCAAGCCAACCTTGTTGTAGTA
GCTAGTCAGGAAGTCATCGTCCTAAGTTCCAACAGAACCAACACACCAGAACAACAACCA
CCTTTAACGAAGAGAAGTGTAGATCGAAAGGATCCAACTTGTAGGCACAAGAGCACAAAC
GAACGAAGACTGGATCCATGAAAACCCAATGAAAACGAACAAAAATTAATGAATCTTGCT
TGATCCATCGGAGACACGCCCACACAGCCTCCTACGAAGCGAGACACGCCGCCAGAACAA
GGGCATGGTGGGAAGAACCATATTCCATCTTCACAGTCATCGCCGCACTTGACTTCCTAA
GCAGGACACAAAGCCTAAGCAGACTAAAAATACACGTGAAGACAAAGCATGAGCCCTTCC
GATTAAATTATGGCGGATCGAAAGTATGTCTAGAGGGGGNNNNNNNNNNAGACTACTTGA
CCAAATTAAAACTTACCATTTTCCCAATTTTATCGGTAGGCAAGTTTTAGCGATTCGATT
CTAGCACACCCTACACATGCAAGTCTACGAGTTGTGCAACGGAAAGTAAAGACATTGCAA
GTGAATGCAAATGAGGGATTGTAGATATCAAACACAATGAAGACACAATTTTTTTGATGT
GGTCCCGATAGTTGGTGCTATCGTACGTCCACGTTGATAGAGACTTCAACCCACACAAGG
TAATGGCTGCACGAGTCCATGAAGGGTCCGTGAATAAGCAACCTTGTCTATTCCACNNNG
GCTTACATCCATGAAGGACTATCCTCACTCGGGGTAGANNNNCATGAAGTAGGTGATCTC
CTTGCCGTTACAAACTTCTTTGTTCAACTCCACACGATTTGGAG
