morexGenes - Barley RNA-seq Database

Contig contig_41434
Source Contig contig_41434
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41434 (9596 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_41434

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57115	1	643 bp	MLOC_57115.1	Available	Available	None
MLOC_57114	5	1318 bp	MLOC_57114.4	Available	Available	LOC_Os06g14490.2, FRAME:+2, EVALUE:7e-82, 13106.m01608 protein calmodulin-binding heat-shock protein, putative, expressed
MLOC_57116	7	3481 bp	MLOC_57116.2	Available	Available	LOC_Os12g29710.1, FRAME:-3, EVALUE:5e-162, 13112.m03024 protein NBS-LRR disease resistance protein, putative
CDS Structure of MLOC_57115

CDS Structure of MLOC_57114

CDS Structure of MLOC_57116

Contig Sequence (9596 bp)

>contig_41434 9596 assembly3_WGSMorex_rbca.fasta
GTGCTCGACAAGGAGTGCGACCTGCTCCGGGACCTCCTCGACCGGTACCCCGACTACACG
CTCACCTTCACGGGCCACTCCCTCGGCGCAGGCGTCGCCGCCATGCTCACCATGGTTGTC
GTCCTCAACCTCGACAAGCTCGGCAAGGTCGAAAGGGCCCGCACCAGGTGCTACGCCATG
GCGCCCGCACGCTGTATGTCCCTCAACCTCGCCGTCAGATACGCCGACGTCATCAACTCA
GTTGTGCTACAGGTGACCCAATTGATTTGGTTGCTTGCTTGTCTCAACTTATTTGGTTAC
TACAAGTTCAGTTGTACTAGGAATTTGGTTACACGCCTGTCATCAGAATTTATTTTGTTC
AGTGCTGCTACTGCTTCAGACAACATACCTGCTCTGCTTCTGACTTCTGAATGGGATAGA
CATTGCATTGCTCACCAACCGATTTGCTTACTTGCTTGCTGCTTAAAATACAGTTTCAGA
AGTTTGCTACATGTCTGTCTGAATTTTGTTTGAGTGCTTGCTTGCTGCTACAAATTCAGT
TGCAGAAACTAGTTACATGCCTGTTGTAATTTGTCAGTATATTAGAATTCCGTTATGTGC
CTCTCTGAATTTTGTTGAGTTCTTGCTTGCTGCTACAAATTCAGTATATTAGAATTCCGT
TATGTGCCTCTCTGAATTTTGTTGATTGTTTGCTGCTACAAATTCAGTACAACTTAGTTA
CACGCCTCTCTGAATTTTGTTGAGTGCTTGCTGCTACCAATTCAGTAGAATTTAGTTACA
CGCCTATCTGAATTTTGTTAGTGCTTGCTTGCTGCTAAAAATACTGTTGCAGAAGTTAGT
TACATGTCTGTCTGCGTTTTGTTGGGCACTATTTCTGTCAGACAAGAATACCTGCCCTTC
CTCTAACTTCTAGATAGAATCATATCAATAGAGTATGTATAGGCTGAATATAACTGTTGT
TGTTCTGGCAATTGACAGGATGATTTCCTGCCTCGGACGGCTACTCCTTTAGAAGATATT
TTCAAGTCGATTCTCTGGTATGGCCATGCCTCCAACGCTGTTATATGTTTGTATTTACTG
CTGTTAGTTATATAGTATGATTCTAGCACACACTTCCACATCACGTAATTCCGTACTTCC
ATATTTCTCTTTTACTCCAATTGAATATTAATAAGCCAATGACAGGCCCTAAATGTATCA
GGTGAAAACTAAGTACTGCAATGTGATATTGATCAATCGATTCTTTAGTTACTTCTGTTC
CCTAATTTAGCCCTTCAAAGTGCCAAGTGGCAACTGTATATATTCCTTCGTTGGGAGACA
TCATGATTCTAATGTGACTGATCACTGTGATAGGCTTTTGCCTTGCTATCTGAGCATGAG
TTTACCCCTAGACAATTATTTTTTTCTGGTTTCTAGTATAGTAGCTACCAAAGAGTACAT
ATTGGTTTTGCCTACTTACCCTACTATATTACATACTACTCGTGTTTACCTTGGTGCCCT
TCCCCACTATATCTTTTGTCTGCCATAAATGTTGGTTAATCAACTCCGATTTAGTTAGCT
CAAACTACTAAGGAACATCATACAGAAATCAATACGACACTCAATCATGGATAAATAGCA
GAAACTAGAACCAATATATAGGCCAATAGGTTTTTGCTTCTAGAATGGCTTCAGGAAAGG
AAAAAAATATCTCAGCATCAATAAATTGCAAGCAAACTCATAAGCTATGGATCAATAGCA
ATGAATTCTAATGTAGATGGGATTTTTTATCTGATTTTCCAATAATTGGTTTATGTTTAC
TGTACTAGCTATGATATGGCATCGAGTTTGTTGAATGCAATGTGATTATTTTCTTCCAGC
TTTGTGGGTTGGAGCAATTTTAAAACTGGGCCATCTTCTCTTCTTGGGCAGTCTGCCATG
TCTTCTATGTTTGAGATGTTTGAAGGATACTTGCATACCTGAAGATGCTATGCTAAAGGA
TCCAAGGAGGCTCTATGCACCAGGTCGGATATATCACATTGTGGAAAGGAAAAGTTTCAG
GTACCTTTATTTTTTCTGTAGTGTTGATCTAGAATGTAGAAAAAAATATAGGAAACAGTT
ATTGAGCAATGGCAGAGGTTCTCACACATGTCAGAAGTAGAGAGAATATTATGCTAGTGC
TATAAAGAAAATACTCTGTTCCCTAGTATCCTATGAGAACCTTCATGTTGGTTGTCAGTA
TGTAGTTCAGTTATTCAAACACTATGGATGACACAGCCCATACTACTTATTTAATAATGG
CTAAAACTATTTAACACGATGCTGATTTCTTCAGAATTATTTTCTCACTAATGATTACTA
TGTTTTAGCTATTGGAGGCTTCCAATATTTTCTTAAACACAGTTTCTTGGTGATATCCAT
GCAGGTGCGGAAGATATCCACCGGTGGTCAAAACAGCTGTGCCGGTAGATGGTAGATTTG
AGCATGTTGTTCTTTCCTGTAACGCCACAATGGACCATGCCATTGTTTGGATCGAGCGGG
AAGGCCAGAGAGCTCTGGATGTAAGTCTTTTGTATATACACAGCATATTTATGTCATGTT
GGTGTTTCTGACAGAGAAGTAGAATAAAATTCTGTTTTACCAAATTGTAGTTTGCATGTT
TGGTAGCTTCTAAATACGCAATCCAGCACTTGTTGTCTCAAGCAGTGCATGCCATCTACA
GTAGATCAGGCCGTGTTGTGAAGCAGGTACTGGGTTCAAGTTGTGCACAATCTAGAGTAC
AAAGTAGTTTGAGTGTAGATATGTCAACATGAAAATGTTAGATTGTTAAAGCGTCTAGGA
AGGTTTAGAAGTTTTGTTCAACTTCAGATTCAAGTAGCACGCATCATGCCATTTATCTGC
AGCAATTTCCAGACTGAACCAGTGAATAATAATAATGTCATAGCACTGCTCATATGACAT
GTGAACATGAACAGCTGATGTTGGAGAAGGAGCGCGCGACGGCAGCACCATCGAACCAGC
GGATGGAGCGGGACGAGATGGCGGTGCAGAGGGAGCACGTGGAGGAGCACAAGGTGGCGC
TGCGCAGGGCCGCCACGCTGTCGGTGTCGGGCATGGCGTCGGTCTACGGCACGTTCAACG
GTGGCCCACGGCCCGAGAGGAGTGAGAGCTTCCCGCCGCCAGCGTCGTCGAGCCAGCAGC
CACGGGTGAGCTGGAACGACCTGATAGAGGAGGTGTTTGAGAAGGACGAGGATGGCCAGA
TAGTGCTGCGCAGCCCCTCCCCTCCTTCCTGACGCTGATTGTGTATGTAAAGTCCCTTCT
TTTTGCTCTTGCATTGTAAATTATTTTGATAGGATGTTGTTCATTATTTGTTTATTGTGC
CTTGTTCTCCAGTGCCTTTTACTCATGTAATTAGTCCTATCCCACCACGTCTGAAAACCG
CAGCAATGCTGAAAGACTGGCAAATTTCGAATCAAAATTCTGAATAGTTAGGACTCCATT
GTGGGTTGCTTTTACATGAGAATATTTTTTGTAGATGTGTATATTGTCCAATTTGAGATT
ATGGTTGCTTCTGGTGGTTCAATAGAGGACTGGCAATTTGTGATGCTCAATTTAAGATTT
TTGTATTGGAATTTTGAATTTCGAAAATGATCTGTGTAATGTGAAGTTTTTTCTTTCAGA
TAAGTATATTATCCATTTTGAGAATACAGTGATTTTTGTGTGGCAATCCTCTGTACTTTT
CTTTATCTTAATAGAATGATGCGTGGCTCTCCTGTGTGTTTTAGGAAAAAGGAGAATGCA
GTGATTGTGATGGTTTCATGGAGAATGGAAAAAATGTCAATTTGTGATTTTTTTGTGTTC
AAAATCTAAAAAAATACTTTTATTTTGTGAAAAAGTTGAAATAATTTTTGAGTGATGTTT
TTTTGTTGAAATATCAGAAATGGGAATACGTAAAGAAATAAATAAATATTTGATTTTGGA
ACGCTACAAACCAATTCTGAAAATATTATTTGTGACTAACTTTAAAAAAAAAGGAAAAAT
TGTGACTAATGGGTGTGTCCTAATAGGTGTTGATGTTGAAATATGGATGAGCTTTAGGCC
CATATATCAATTATTTCCTGGAAAATCTGAAACGCCCATTAGTGGTTTCATGACATGGTG
GGGCCTGTTATCCTATCCCGGATGTGGAGGAGGGTTTGGAGGGTTTGGAACAACGTATAA
GGAACTCTCCTCCATATCCTATTAGAGCATAGAAGAGGTGTGATACACATGCTCCTCCTC
TGCCTGCTTTGCACCTCGTGTTTCGTGAACGAGCTGTGCCGAGCTCAGACACATGTCGTG
TGTGTGTTTTATTTGGCCTATTACAGTCTCAGTTGTGGGCCTACTCCCGTTTCTTCTGCC
CCGGTTCATCGTTCGCAAATCGTGCTTTGAGAGCGGTGCATGCGGTTAGAAGTTGGACGA
CCTGTGTGTGCGCTGGAGGCGAACATGACGCGGCTCAGGTCGAGCGTAGATCGCCAGGAC
CGGACGTCCGGTCGGGCGCAGCAGCGCGGACTGGTTTTACATGAGGAATAATACCAGGAA
AAAACCGAAGACGAATTCACAAAAGAAAAGAAAAAACCGACGACGTGGCATCACACGGAC
TTGGCAATCGGGACCCATAGATCAGAATGCTCACAAATAATAGAAAAGGGTAAAATGTGG
CAACACTTTCTTTAAATGGGGTATAATGGATGAAATTCTCTTAAATGAGGTAATTAGTGT
CAAAACTGTCAAACTTAGGGGTCAAAAACGGAATTCACTCTTTTCCTTAAGATAAGGCAA
TCTTAAGGCAAAGTTGTCTATTTGCTGGTCAATGGCTGCAATGGTGCAGCTCCAGGAGGA
TCTCCTCTAAAGCAAGAGGAATTGTGAATAAAGTAGCTCCTGGATCTTGTACTAGTCCTC
GCACAACGGGCCCCCGATCACAATCTGCTGAGAACCCGTGCTCCCCTGCAATGCACCATC
AAACGTGTCACAGGCACACCAACTAACAATATACATGAGCCGAGCGTGGCATAAGTGGAG
AGGCGGTTTATCATGATTATGTATCTTTCATCATTAGCTTTTCATTGTTGGAGGACCGTC
GCAACCAAAGTTTGGCGCAAACATTGTGACTGATCAAAATTGCTGCAAAATTTATGGCAG
TTCCAGTAGTAAGTTACCTTTTGGTTAGAATCAATCGCCAATCTTGCACACCATGGTATA
CTTGCCGCACCGTAGAGCACCCCAGCAAACTCAACCTGGAAGGAATTTCTCAGCAATAAA
TCTCAATGTTTTCAGGATGTATAACCAGATATATTGGTTTGATGTCCACTCTAAAAGTAA
AATATGATGGATGGATTGAGTAAGGTACATAATATCATAAATTCATTGAAAACAGAGGCC
TACCTGTAAACCTGTATTTGCTAGGAACTGCTTGAAATCAACCAATTTCAGATCACCCAC
AAGAACTGACTTGTGGGCTGATGGAGATATTGTGGGGATAGCAAAGTAAGCTTCTCATCC
ACCTTTCCAACTTCTGCATCAACCCAAGTTCTGACTGAAACCAGCAGCGTCAGAGCCAGT
GCTCTGTTACAGGAAAACCTCTTAGCCCGGTAAATGAACAGCAAAGTGTAGAATTCAACA
TATAACCAAATGAAACCATATGGGGGAGCACTTTGGTCCGGGGCTGTCTAGTGAGACCAG
ATGATTTCTGGTGGTTACTGGCCCGGTGTTTGGCATATGTGGCTCAAGGTTGATGAGCAA
ATTCAACTAGTTCGACATTAGTTAAGTGCTTATGGCTGGCAACTAACTAGGAAATGGAAT
GGGCTGCCCCGTCGGAAAGCAACAACACTTGTTTTTTCAATTCTTCATTTGAACAGCAAA
AGAAGTTTTACCATTTTCGTTTTGTCCTTTTTAATATGGAGCCTCTCAACACTTTAGCAG
CTAGAGAACTCAACCCGTTAGATTCCTAGCTTTACCGATCTCAAATTTGTATCGTGGCAT
AATCTCCACATCAAGATCGATGTATATAGGTTGCAGAGTGACAGGCACACGCAACTAATT
AATTATGGAGTAAAACACATACTGACCACCAGAACACCCCCTAATCATATGTAGCCTCGC
CGAATTATGGCCCTATCCAGAGGTTTCGTGTGCCCCTGGACGGCCTACTGTAAAGTGACT
TAACAGAGAATTAATTGTAGAACTTCCCTGCAAATGGGCTAGGCTTAGAAGAACTAACAA
AACCGGTTTTATCCCATGCCGTGGTAGCGGCTATTCAAACAGATTCAATACCTTTGCAAA
GGGTGTGAATCTTTACCCACAAGTTGAGTTACAACTGTATTGCCACTTAGGAATCAATAC
ACTACACGTTCTGTGCTGGCCAGTCATCTATACAGGAGGGAGGATGCCACTCAACCGATG
ATGCGAGAACTGTGTGCAGTTGCGGGAGTGCGGAGAATTTGATGCAAACTGAGACCTTGA
TACTTGCAGTGTAGCTTGGAAACATACAAGGTGAAGAACTGCTGTGCTGGGAGTATTAAG
AAAGAGGGTTATTCAGGTGAAATGTCAGTAATTTTGATGAGCTGAAGAAACAGAGGATGA
CTTCAATGCTTCGGTGTTTATGGTACAGCAGGAGCAAATTAACTTACCTGATTATGTGAA
GAAACATACCATGCAAGCCTCGTGTGCCAGATGTGCATGGATGGATAGAATTCTACAAGG
CTAAAAGAATGTACAACTCCAAGACAGATAACCCTGCATTGTAGATTGAAAAAAAAACAT
TGTTCAGACCTTCAAATTATCTGGCAACAAGGCAAACCAAATGCAAAAAGAAAACAAATG
ATTTGGACACTCTACATAGTTTATGGAACTACGGGTGTGTATGGGATGATAATGCCTGTA
CCAACCAGTTTTATGTACGGATGGAAGATGCAAACTGAGTCCTTGATGTTTGCAATGGCA
ACTTGGAAATATACTTGATTGGATTCTAAGAGGCTACAAGAATGTACAGGTGGAAGAAGC
GCCCTGCGGAGTAGATAAAAAAAACAGACCAAAACAGACCAAAACAGAGAATAACCACTC
CGATGCTTCAGAGGTTAGGAAAAGGCAGGGGAAATCAATGAGTATGAAGTAGGAATGAGT
GGCTGTTACCTTTGGTCAGATTAAGTTCTGATCTTGGGAATGGTTCCTCTTAACTTGCGG
CACTGCCTCTTTAGCTCCTCGCTGTTACACCAACGGACATCCAATACTTGCAATGATCTT
GGGAGGCCGCCATTGGGCAGGGAATTGATTGCAGTACTCCCGTATATCTTTAGTTCCTGC
AGAGACCTTGGAAGGCCGTCCTCCGGCAGTGACTTTAAGGCAGGGCAGCTGTACAATTCT
AATTTTTGCAGAGAGCTTGGGAGGCCGTTTTTGGGCAGAGACGTCAGGGCAGGGCAGGAG
CAGATCTCTAGTACTTGCAGCGAACTCGGGAGGCTGCCCTTGGGTAGCGACTTGATGGCA
GGACAGTTGGTGATCTCCAATTTTTTCAGCGAACTCGGGAGGCCGTCCTCTGGCAACGAC
CGGATGACTTGACAGCAATGTATCTTTAATGTCTCGAGGCTGGCAAGTCTATGCAGACCT
GACGGGAGGCACTGCAGCTTCTTGCAAAACGAAAATTCGAGCGTCTGGAGGGAGGTGAGG
AGCTCAAGGGCCTCCGCTTGCTCGCGTGTGAAGCACTCGGCATCTTTGTTGCTACCAATA
CATAGGGTGGTGAGGGAGGAAGAGAGAAGGCTGCAGCTATGAGCAGCAAGGAACCCTGCA
ACATCATCTGTCCTCAGCTCAAGCTCCTGATGTGCAGAGGAGGGGGGAAGAAGCTCCTTG
TCAAGTGGCTCAGATCCGGCGAAGACTTTGGGGGTTTCAAAGATGCATAACCGTGTGAGG
CGGCCCTGGGCCAGGAGAGGGCCTATGCCCTCGCCTCTGAACTCCCCGCAACCACTCAAA
ATTAATTCTTGCAGGGAGGTCGGAAATGGAATAGAAGAGAATGAATAGGAGTGGAGTAAC
TTGGGGCAGCCCCTTATTCCCAATGATTGGAGGGAGTGGAGACCTTGGAGCCCACCTCCT
TCCTTGTCACCTTCTAGCGAACTGGAGAGCAAGCTCAGCCCTGGGAACTCTTCGATGTTT
AACACCTTTAGCTGAGGAGGCAAGAGCAGCACTCCGTCTACCCCTTCTTTTGACTCTTGC
TGCTGCTGCTGTACGATTTGCCCATGATGCAATTGTTCAGCAGCAGCAGAAGAAGAAGAT
GCTGATGATTGTCCCGCCACACCCAGCCATTTTATCTCTTGACAACCCGCTATTCTCATT
TCTGTGAGCTCCGGCACAAGTGAGAGCAGATGTGTCAATTCCTTACCATTGCAACCACAT
CGCTTGACACTTATCTTTTTAACAGGTAGCTGACATCGGACATGACTCACACTTTCAATC
AAGGATAATACATTACTTGAGCCACATATCTCGAGCAATTCCAGAGATGTTAGCATTAGG
AGATGATCGAGCAGTAGAGGAGAGCAATTTTCAATGACCATCTCCTTCAGATTAGTTAGA
TTAGAGAAAACCAACCCATTCAAGAATACACAATCCTCGCCATTCTTTCCCTTCACTTGC
AGTGAACAACTTGAGTCTGATCCGTTCTCTTTTTCGTAAACTAGCTTCTGAAGACCTAAG
CCCACCCCTCCTATCACAGCAGAGCAAGGGCCAGAAGTCCAAGGGATTGGAGGCAATGAT
AATAGCTTTGGGCAGTCTTCTATGCTGAGAGATTTCAGTCTAGGAAACCAGTCCAAGCTC
TTCTCTTGCTGTGGCAGATCACTACTATGATGTGAAAATCGCAGCTCAGTGAGTTCAGAA
CAGCCTTCAACGGTGAGTTCTTCCAGCTGAGAGAACAAATGAGAAGTATTGTCATCCACA
ACCCATTTTCTCAATTTTGATATATTAACCAATTCTATCCTTTTCAAATTTTGAAATCCT
TGGCCTAAGATACAGTCCTTATACTCTTCACCAACATCATTGATCATCCAAATCTCTCCT
AAAGGTGGGAGGTTTCCCCAAGACAAATCATCCAGAGAAAGAGATTGCAGATTCTTGACG
GAAAGGTTTGAACCTAGCCATCTTGGACAATTAGTGCCTCCATGCCCTCTAATGCGTAGG
CGTCGAAGATTACTGTGTGGTACAAGACTTTCAAGGACATTTTCTTCAAATTTAGGATCC
CTGATAGATCGCTGAACATCCCATCCTAGTATTAGTTCTTGCATGTGGCTTTTGTGTATC
AGTTTTGATTCAGTTGCTTCTTCTTCTGATTGCACCTTTTCAAGATTGTAAATTCCAAGT
AATCCTCCAATATTTGCCAGTTTCCCTAGTTGACTCAGTTCAAACACGTTATCTTCTTGT
CCAACTCTAAATGACCTTAACTCATTGATGAATTTTAGTCTTCCCACCTCAAATATGTCA
GAGTGAAGTTTTTCTTGGGGAACAATGAAATGGCGCAATTTTACAAGGTTGCTCATATAT
CTTGTTGAAGTGAAGCAGCCATTCCATCTTTCCACATTATAAGATGCTCCAGAAAA