Contig Data
morexGenes
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Map Locations of contig_41406 (5943 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_41406

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57081 4 1089 bp MLOC_57081.2 Available Available LOC_Os07g41630.1, FRAME:+3, EVALUE:3e-51, 13107.m04337 protein hypothetical protein





CDS Structure of MLOC_57081






Contig Sequence (5943 bp)

>contig_41406 5943 assembly3_WGSMorex_rbca.fasta
AAGGTCTTTTGTTGTAGTAGCAAGAAGGGTTTCAGCAAGGCAGTGGCATCCTGAGAGGAA
ATTGTCTCAGAATCTTGAATGTTAAGAGAAATCGAGGAGGATTCAGTTTGTCCAAATACT
TTTTTTACAAAAACCAGTAATATATTTCATAAGGTTATCTTCTCCTTCAATCACCCCCTC
CCCTTGTTCTAAGGATAGTATCTTATTTTTTTTCTCCTCCTGCCATTACTTTAGCATAGT
AATACTTAGTATTTGAATCACATTCCTTAATTTCCTTGTCTTTATATCTCTGGAGTCATT
TAACTTCTTCTTTCTTAACAAGTTCATTTGATTATATTTTAAGATCTTTATGCAAATTCC
TATCATGTGCACTCAACCCAATGGTTTCAACACTTTTATCTATCCCATTCAGTTGATCCA
ATAGCTCCCTTTTCTTTAGCATTCAACACACATCCCCTTTTTGTCTTAGCAACCTAATTC
TTTTCCACCAAACATCTAAACTGGAGCTATCACTCATCATATTCCATTTTTTCTCAACAA
AATCTCTAAACCCATCCATTAGCATCGATGAATTTTCAGATCTAAAGATGGGAGGACGGG
ATTTGTGAGTACCAAAATCAAGTATCAAAGGTGCATGATTAGAAATTTCTCTTTTCTAGC
GCATAAACCAGAGAAAATTCATGTTTATCTCCCCAATCATGGCATATTAACACCTTGTCC
AACTTCTCAAAAGTAGGAACAGATATATTATTAGCCCAAGTGAATTTCCTAACATTTAGT
GGTAGCTCCCTGAGCTCAGCATGTTCAATGAATGCATTAAAAATAAAAGTCCACTCGTTT
GTATCTACATGTTTATTTTTATCAGCACTACTTCGTATTATATTAAAACTTCCCCCAATC
ACACATGGTAGGGGATTATCATGATAAATCTTGAAGAGTTTAGCCAGAAAACAGGCTTTC
CCATCACTCAAATATCAGGAATTTTACACATGAATAATATTAGAGGAATAATTCTTAATA
CTCCCCAGGATACCCCCACAACTTTTCCAAGGGTGCAATCTCTTTTTTCATGGTGGCTTC
ATCATAGGTGCAAAACCTTAATGCTAGACTTATGTACGTCCTACTTAAGGCTACGTAAAC
TTTTCATCTCTAATAAATCGGGCCTCTGATTTCAATCAGGGTGGGGCTCAACCATTAATT
TTGATCCAATTAATGATCTATACGTAAAATAAGTTTAAGTGGATGTAGCATTGCTGAGTG
CAAAAAGAAACAAAAGCTCACTCAAACAGCCAAGGGCAGCAGGTTACGCCACGTGGGCAC
AAAACCCCCCGTTCCCACCCCATCCTGATGATATCCCCTCGCCACGAACCAACCATCCAT
CCATCCCAGAGAAACCAGGAACCAGAGCAGCGGCTCAGGCGAGAGTCCTTCACCCCGATC
CAGGCAAGATGGCATTCGCCGCCTCCACGGCTTGCTGCAAGCCGTCCGCGCTGCTGGCCC
CTCGCGCGTCGGCGTCGTCGTCGTCCCAGGCGCGCCTCTGCAGGCCCTCCACCTCGGCCG
CGTTCCAGGGCCTCAGGGCGCCGGCGCCGGCCTTCGCCCTCGCGCCTGCGCCGCGCCGCC
GCGCGGCGTCCACCGGCATCGTCTGCGGCAAGGTGCCTATTGCAAGCCGGCTAGCCACCC
GTCTCGCGCGCTGGTGGCGAGCTCATGCGTGGTGACTGGGGACTGAATGGATTTTGGTGG
TGCTTGGTTGGTTGCAGGTGAGCAAGGGCAGCGTGCCGCCCAACTTCACGCTCAAGGACC
AGGACGGCAAGACGGTGTCGCTCTCCAAGTTCAAGGGCAAGCCCGTCGTCCTCTACTTCT
ACCCCGCCGATGAGACGCCCGGCTGCACCAAACAGGTGAGTCATCTTCTTCCTTTTTGGC
GACAGTTTTGTGCATCCATGAACTAATCAGTCCATCGACAAAACAAGCAGTTTACAAAAT
GGGACTGTTTACCAATTCATGCTAATCTACTCTGTGTCATCACTGGTCGTAAGCTCGTAT
TCCCTCCGTCCATTTAATGCTGTGTTTTTTCTAGAAGTACAAATCTGACTGTCAAGTGTC
AAGAGCGCGTCCCCGATTTTTTCTAGTATCAAGAGCGTGAGACAAAGGTGCCCAAATAAT
TTGTTGACAGACAGTTTTAGATAACCGGACTCTCGGTCATTATTATGGCTAGAAATAGTA
CTAGTAATTATTTCACATTTGATACTGATGCCCGAAATAACCAGCGCAGGATGTTGTTTT
GCTCCGCACGCAATCAATTTTATAACGTGCGATTTTAACGTATCGGCTGGAGCGTTCGAT
TTTGATCCGCGTGCGTAAAAATGGTATTTTATTAGAGTTGTTCTTATTAGATGCCCCACA
ACACCGCAGAGGTTTTTGTAGCCTCACCTCTAACTTATATATACAAACAAGAGCACAAAC
ATCCTAGTCGACCCCGAGACCGCGCACGAGACGAGCCACCAGCTTCTTGAACGGGGCCGG
TCAGCCCCTGCTTTTTTTTGGAAAAGGGGCGAGCCCCTGCTACTCATCCCCTCCGTTAAA
CTCCTCTTGCTCCTCCGGTTGGCTGCGTCGTGCAATGATGATCTCGGCCCAGATGTTCAC
GCAGAAAATTATTAATTTTATTGTTTCCCTTGCGCGGCAGATCATTCATGAGTATATTAG
TTGGATCGAGCCAGAGATTCTACTGTGTTATGATTTTATAAATACACTAGTTCTGTTTAT
TTGTCACACGTGTTAATATATCAAATTTCGTCCAAATCAGATCTTTCGCCAGAAGACATT
CACCCCTCCTGGTTCTGCCGGAGCTAGCTCACCATTCCTTTCCAAACGCCATGGCTTCGC
CACCATCCAAGCTCACCTCTCCTCCTCCCCTACCCCCACCGCACAACAAGAGACCACGAC
CATACCGTCTCAAGAAATCACCGAGGCAGCGACGCCGAGGAGGCAGCAGCCCATCAAAGA
GGAGGCCGCCGTCGCCAAGGGAGACGGCGCCCGGACGTGCGAGCTGCCGACGTGGGCGGT
GATCGGCGGCATCACGGCGGGCGTGGCGGTGGCGCTGGCGCTGTCGGTGGACGCTGGGCC
GGCGATGGCGCTGGGGCCGGAGGGGCCGCTGCTGGAGGAGTTCTGGGACAACATGCGGCG
GTACGGGCTGTACGCGCTGACGGTGAGCACGGGGTTCGCGTGGGCGCTGGTGCAGCCCAT
CTACGAGCTGCTGCGGAACCCCATCACCGCCGTGCTCATCATCCTGGTCATGGCCGGCGG
CGCCGTCCTGACCGTCCAGGTCATCAACGCCATGGCCGGCAACTCCGACTTCGTCTACAT
GTACGAGCAGTAGCCATAGATAGCTATAGTTAGGGTATTTTGTACGTACGTACAGTATAT
GTCCGGTCGATTTCGGACGAAACATGCAACGCATGCATGATTTTGGGAGCAATAAAAAGG
TGACACACATTAGACCAGCACGTACGTACATTGGATGGATGGACTGTACATGTATCTGCA
TGCGATTGTGATTGTGATTGTGATTGTTCTTCTCCCTTGGACCCAATTGAAAGCTGAACC
TGGCGAGTATATATACTATGTGTGTGTGTACAGGCGTGCGCGTTCAGGGACTCGTACGAG
AAGTACAAGAAGGCGGGGGCGGAGGTGATCGGGATCAGCGGGGACGACGCGGCGTCGCAC
AAGGCGTTCGCAAAGAAGTACCGGCTGCCATTCACGCTGCTGAGCGACGAGGGGAACAAG
GTGCGCAAGGAGTGGGGGGTGCCGTCGGACCTCTTCGGGACGCTGCCGGGGAGGCAGACC
TACGTGCTCGACAAGAAGGGCGTGGTGCAGTACATCTACAACAACCAGTTCCAGCCCGAG
AAGCACATCGGGGAGACCCTCAAGATCATACAGAACCTCTGAATCCTCTCTCTCTCTCAG
CTTCCCTACGAGTAACAGATTGTTATCTTTTTTTTCCTTGGATAAATCTCGATCTGTGCC
GCTGTAATCGTGTAACATAACATGCTCCTGAACATGCATGCATGATCCCCCCCTACGTGT
AGAGCTGTTTTGATGTGTAATGCAATGGATTACTACGTATGTGTTACCGTCTACGTGTGT
TCAGTTGGATCTTTGCTGTAGTGCACTTTCTTCAGGGACGCCGTTCCGTAAAATCTAATG
AGCGTACTTCTAATCCTCGTTTCCGGCCCACTGTGAGTAGTGACACCGAGCATTTGACTT
ACGCATAAGCGATGATTGACACGATGCCCAGAACCTTGGATATATATATATATATGCCTG
GGTAAAATGCGGCGCTGGCATCGACAGCCACGAATTAACCTGGTATCGTGCACGGCACGG
GGATCATACGGAGCTGCGCCGCGCCTATCTGCCACGAATCAACCTGAACCTTCTTTTTTA
CCCAAACTGCACTGCACAAAATGGATGATAAGCTAGCTCTCATGGCAAGCCCTCGTGGAC
CAGGTGGCCGGCCATGCGCTCTGTGCTCACTCACTGCTCCAGTGGCTACTGGTCACCGGG
CGGCAACCCGGCCGGTGTGCAACGGCCCATCCTATCACCAGGCCGGAAACCCCACCACCG
TCCCGACCGGACCGGCTCGCATGGGGCTCACACACACGATGCGTCTTACTCTGTCTTCTA
CTCTGGCTATAACTCGTCAGGCTCAATTTTAGCGGTGATCCATATATAGTTTATCATGAG
CACAGATGCTTCGAATGAACGGCGACGTCGAAAAAATAGCAAAAGGTATGTATTAAACTA
ATTTGAAAATTTTATGGGTCAAAGATGAACAAGTTTTGTATGGGGGTGCAAAATTTCATG
GCGATTTGACATTGGAGGAGCTCGGGCCAGAGAAAAACAAAATCATTGCTCCACGATATG
AAATCGTGAACCTTTTTCATGTTGCCGACATTTTTGTCCAGAGCTATGATAAAAAAAAAA
TCCTCTGTCCGGCAACAAGTGTACATCTATATAATGGGTGACATATTAGTTCTCTTTCCT
CTTATTAGCCTTCACCAATTATATTAAAGGAGAAGAATGAGGATAGAGTGAAGAGAGTGA
TTACGAGGATGCAATTGCATTTATTAAAGTGTAGATGTACACTTTTTCTGAGAAAAAACT
TATATGATAGATGTACACTTATAATCGGATGGAGGGAGTATGCATCAATGAATAGTGATG
TTACTGTCTGGCACTATTCAATGTTGGTTTTGTTGTTTCATACGAGCTCACATTCCGTGT
CTGAACTTGAAGTTTCGCATGACAACAGAACATCACCATCTTAGCATCATAAATTTTTTG
AGATTGTTTTGAAACTTTATAACATTATTTTCGCGTGGTTTTCAATGATTTACACCGAAT
ATTGGTTTCCATGTGTCATTCTTCCGCCTCACATGTGTGAGGATTACCATAGGCTTATGC
ACACAGTGCGGTTTACCCAGTCTTCAAACTTTGTAGTGAACTGATGCGTCGTATGTGGAG
TATTGGCCTATTGGGGTTGCTTGTTTCCAAACTACAACTTGCAAGTTTTGTTTTTGTAGA
AAACTTGGTAGGCTTAAGTTTAGGCCGTTTTCCAAACCTAGTATTTTTAAAGTTTTTTGT
AGAATGCTGACTACCCTATTTTTTGAAGCTATGGCTTTAAAAGAATAATGTGCTAGACAT
CCACAAATATCATGGTTTTATAAATCGCAGTGTCCCCAATAATGTAGTACTTTTTGTATT
TTTAAACCCACCCATATATTAATTAAATTAACTATACAATCATTCGTTACAACATCTGCC
ACACAAGACGGGACACCATTAATAAGGACACAGTTAGACCGAATATTGCTTTTGGCTCCC
GAGCTCACTGGAGGCCTTTAAATTCAAACTTCAAATTCAGTGAAAATTTGTATTTTAATG
TTT