Map Locations of contig_41351 (10381 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_41351

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57021 2 2465 bp MLOC_57021.1 Available Available LOC_Os09g36220.2, FRAME:-2, EVALUE:0.0, 13109.m07593 protein response regulator receiver domain containing protein, expressed
MLOC_57020 1 565 bp None Available Available None





CDS Structure of MLOC_57021






CDS Structure of MLOC_57020






Contig Sequence (10381 bp)

>contig_41351 10381 assembly3_WGSMorex_rbca.fasta
CGAGGCGGTACACGCCGGCGCGCGCCACGGTGGCCTGCGGCTTCATGGGGCGGTAGACGA
GGAAGAGCGCGAGCGCGATGACGGCCGCGACAACCGCGGCGGCGAGGAGGGAGGCGCCGA
GGACGCGCCTGCCGCCCCAGTCGCCGCGGTGGATCTCGCACAGGTTCTTCTTGGAGGACT
CCATCGATCTGTCGTTCGTTGCGCCGGACTTTGGTGCCTTGCCCGGAGCTTTATGGTGGG
CCGTTTTGGCGCGACGCCGCCTCCGGCTTTCCGCTTTGGCGTTCCGTGCACAGCACCGCA
TCCGCGTGCCGCCGTCCGATCGCGCGAGACGCGCATGCGCAGCCGTAATGCGGCGTCGTA
AGCGCGCGTTGGCCGGTGCCGGCACGTACGGTCGATCGGAAGCCACCGGCGAAGCTGCTT
GGTGTGCTCGGTAGTGACGATGGACTGGGCTGTGCAGTCTAATTCTGTGACGTTACGTAG
GAATGGGAACGGGCTGGCCCACTCCAACCTGCACCTGGTCCCTACCGGCCGGCCCATGAA
GCCCATCCAAACATCGTTAGAGGCGAAATCACTCCCCACCATCCACGAGGTTGACAAATG
GGGCACTGTATGTTCGTCATTTGTCACACTTGGAAGATTCTAATTTTTTTGGCAATTTTG
TTTTTAAACGTTTTATCTCGTAAATCATGTGATAAAATCATTATTTATTTTTGCAGTTGA
ATATTTTGCGCAAAGATGTTTAAAACTAAACCATGTGTTAATAGATTTTTAAAAAATCAT
GAAAACCAAAAAAACAAAAAGCCTCCCCACCAAAGATTTTCAAAAGCACGGGTGTGCTTT
TCTCAATTTATTGAAAGCACAGCTGTGCAATTTCGTTTTTAGGAAGTATAGTTGTGCTTC
TCTCTTTTCAGGAAGCACGACAAGCGCAAGGCGGGCTTCTTTTCTGAAGAAAACACAGTT
GTATTTTTTCTTTTTGAAAAACACTTGATGTGCTTTTTCTTTCCGCACAACCATAATTGT
GCTTTTCCCTCCTCGTATGTCGTATATGTACAGTTTGTGATTTTTCTTCTTTGAAAAAAG
GTCAACCGCGCCTTTTTTTTCTTTTGAAAAGCACAACAGTGCTTCTTGCAAAAACACATG
TTATGCTTTTCATGAAAAAACATATCTTCCTAGAAAAATATATGTCAAAACTTATGAAAA
AACATTGAAAAAAAACCATGAAACAAACATGACTCCTTAGTGTGCGCCTACCGTGCGATA
CGTTTTTTTATGGCGGCAGCTGGCGCTCCGGCGCCCCCGCTAATGTCTGCTTGAAAGGCC
CACGAAGAGGTAACCGCTAGTTTGTTCCTTTCCATTAGATGTAAAGTTGCATTGCCTCAA
AAAAAAAAAAAAGATGTAAAGTTGCAAAGGGAGCTATGCTCATTCGTGAAACTGGTGGGC
ATATCACACGCAAGGTGTCCCACCTGGGCCAGCCCCTGCAGCGAGTTGTATACTTGTATT
GTAGTGAGCGACATTGTGTAGCGATCCCGCGATCTCACTTTTTCATGAAAATAAAGTTAG
TCAATTTGACCGGATTATCTTTTTTCTTTCATTTTATTAACTATAGAAGCAATAATTTTT
AAGGGGAATATTGTTTGAGAGTTTTTTTAAACTCATAAATTTTACCTTTTTTATTTTTTA
AACGTGAAAATATTTTCAATGTTTTTTTATATTTTATAAAATAATATTTTAAATGATAAT
GTTTCTGAAAAAAAAACTGATAATTCATGTTCTAAATGGGGCTAAATTTCGGACTTCCAG
TTATTTTTTCATTTTAATACATTTTTAAAAGTAACATTAAAAATTATGAGCAATTTATAT
AGTTTTGAACTTTTTTGGAATACTTTTTTAAGTGGACTATTTTAGAAATTTCAAACACAA
TTTATATGTTTTGTAGATTTTTTAAAAGAAAATCTTTCGAGAACTAGGGATGCGTTATCC
AAGGCTGATTCTAGTGAATCACTATAGAATCTTCTGAAAGCGGGTTCTTTGAATTAGAAA
ATAGAATGGCAAAGAAAGGGAAATAATAAAATGAAAAACACGAAAGAAAACAACAGGAAA
AGAAAAAGACTTGAAAAGACCGGACTGGAACATTCTAGTGTTTGCAAAACCGGGTTGCAG
CAGACATAAACCCATTTAGCTTGTTCCATATCTTTTTTGTGTGTGTTTTGCTGACAGTTC
GAAGCAGAGAGTGTCTTTTCAAGTTCATTGTGGTACTTTGAAGCATCACTGTAAATTATG
AAAAGGCATAGCCGGAAACAATCAAGTGGGTAAAACCTCCCATTAACCATTATAAGCTAA
ATTTGGATGCTACATTTTTTTGAGGATTGCTTAGGGGCTGCTGCGGCAATTATATGGCCC
CGAATGACCATGGTGTGCCTGCGACAAGTGATTCCTAGAGGCTGAGTCGCTTCCTAAATT
CAGCAACAACATGTGCCACCACGACTCAAAAAGGTTTTGAAACTACTTCAAAACCTAGGC
TCTAGAAATATTTTCGCGGAGTCTGACTCATTGAACGTTACTCAAGCTTGTAATGATGTT
GAAATATATTATCTGTCTTTTGTCATCAGTTTAGACTTTTGGAGCAACTGACTGAAACAT
AAATTCAGTATGATATCAAAGCAAAAAGATCTCAAGTTAAAAAAAAGTTTTTATGGCCTA
CATCAATCCCATGTCTAAGGGCATGTAATAGACACCTGTAGTCTGTAAAAGACCTCCACG
TCAGCTATAGACAACAGTAGAAATATCTTGTATGTAAAAGATGTATTCCGTAGTATGAGA
AGTATTCACTGTATATTAATGCTTATCTTTTTGATATTTGTATGTACACCCAAAAATTTG
GAACCGAAGTAAAAAAACACGTTCACCAATCCATTCAGTTCGTGGGGCATGGATAAGACG
GTTTTGATGGAAAACAAAAAAACTTCAAGCGGCCGGTAATTTACACAGAAAAAATCACGC
AAGAACTTGCCAAGCCCTCATCCATACAATGGGCAGAAGTTCAGCCAAACTGCAGGAATA
ATTACAAAAAATGTCTTTTGAATGTAAATCCATCTATAGTACGGAAAGACGACATCATTT
TGCTGAGGCAGTGAACTAAACTGCAGCAACGATGTTTCAGTTCGAGAAAGCACACAAAAG
TATGTCTTAGGACATCCTTGACTGACACCTTTGCAACCACACAAGAGTGCAACAACGTAT
ACGGCAAACATGTACCGAGTCAGGTAGTATGTTCTCTAGCCGCCTACTGACAAACTCTAC
TATGTACGAGCTAATCTACGACAAGTTAGCGTATACAATAACAACAGACTTAAGCATACA
AGAAAGAAAGGTCGATAATTCTGATGTAGTTATCTCCACTCTTTCAAAGAACACAGCAAA
TCGGCGCAGCAAGGCGAACGGTTGTTGCCTGCAGGTGACATCTAGCTGCTTCCTTGAACG
CTCTGATCTTGCCGAACAAACTGACCCTTCACCCGGGGACGCTGCTCTGCAAGTAGTTTC
CTGCTCTGGTACCGCACCTGCACAATAATGCAAGAATGTAAACCCCAGCTCCTTCCCAAA
AAATTGGATCAAAATGGAAAGGAAAGATTTGTTCTTGTGCCTACCTTCTTCTCGAAGCAC
CGTTCTTTCCGTTTGAGCCGAAACTTGTTCAGGGCAATCTCACGTTGGCTCAGGTGATGC
AACCCCTCCATGCTTGGATTTTCAGTGGCACCGTCGGATGCGTTACATTGTTCAGTAGGG
GTGGTGATCCGGTTGGAAGAGCTTCCGCAGGCGCTGCCACTGAGAGCATTGCTGTTGCCA
GAGTTGTTCAGCACAGTACTGCTTCCGCTTTCACCGGTCATAGGTGAAACCTGCTGAGTG
TTGCTGTCTGAGGGGATTTCAACGTGCAGGTGCTTTTCATTTGCAATAGGTGGAGGTAGA
ACTTCTTGCAGCTGTGTGCTTTCAGTCTGCTGGCAGTCCATCTCTGTTGGATCATTCTGT
TGACACTTCTGCTGCGATGAAGTTGCCTGTGTGTCCGCCTTTTGCGACACTGGAGTTCTG
CTATTCCAAATAGGAGGACCTGACTGTGGATAAAGAAGGGGTGCCACAGGTGCACCGCTC
CAGAATGGCTGCCCATCAAAAGTGAGGCCTCCAACAGGAGCGGGAAGTGGTACAACTCTG
ATAGGATGGCAACTTGTGTGTGTCTTGTCTTGAGAAGGAGCCGCCCAATTTCCATTCTTG
TTTGCTGGATCTACATGTGTTGCTGAGGTGCTGCATGGCTGGGCATCACCAGCGTTACCA
AAAGAGGATACAGGCCTGCAGTTGTACCTGTGAATAGGAAATAATTTTAACCGTAAGATA
TCTTTCTAGGTCAAGAACAATAGGATCTCATGGTCCTCTGATGACAAAAGCACAGATACC
AGAACAAGCGAAAGAAAAGGTACACTTACAATGAAAATGCAGATGCAGTTGAGTGGTTCA
GGGTTCTCGTATCATTTTTCTCTTGGTCCTCTGATCTGCCATAGTCAGATCTTCTCAGGG
AAAGCTCCAACTGATGGGCTGGGATGGAGAACCACTTATCGCCGTTTCCTTTAGAGTTTG
TTCTCACAATATCCACCTCCATCGTGCTAGGCTTCGGTGCATCATCAATTATATGGACTA
CCTCGATATCTGTCGAGGCTTTCTTGCGCTTATTTTCACTAGGGTTTTCAGGATCTCTAT
TTTCCACAGTGTTTTTGGGGTCAGTAGATGATTGCCTTTCTGTTATCTGCTTGAACTCCA
AGAAACTGTTGGTGTGCTTGCTCTCAGCCTCCGGTTCTGATCTTGTGCAAGAACTCTGCA
TAAAGAAATACCAATACTTAGTTTTTGCAAAGCTGCAGCAACATATCTAGGTTCAACATA
GAGGAAATCACTGATGGCTCACTGATGGGCGATGGCCCATAGTTTCTACAACTAGCTATC
AGGTACTTTAAGAATGATGGCTCATAGACAAGAGGAAATCACTGATTCCATGTTCAGTCA
AACAACCAGCACTTAAAAAATAATGCAAAATTATGTTTTCTGTTAAACTTACTTGAGCGT
CACTTTCTTGTTCACTGCATTCTCTATTTTTACGGACCACATTTTGAGTTGAATGTTCAG
CTTTTGTCGCTTCAGTCTTTCGCCCGTGCTGTTCTGCGACATTCTCTTCTTGTTGTATTT
GCTGTACATCGATCTCACCATTTGCCTGTAAAGGAAGCGGATCAAAGTTATAATCTAATA
AAACAGAAAAAAACAATTGTTATAAAAAGGATGCAAGCATGTGGTCTTACAAGTTGTTTT
CTCCAAACGTGTTGCCATAAGTTCCGTAACTCATTCTTTCTTATCGGCTTGACAAGGAAA
TCGGCTGCGCCCTTCAGCATGCATTTGAAAACCATGCTAACTGCATCATTCGAAGACATC
ACTGCATAGCCAGAAAAAAAAGAATTAGCATTAGACTAAGCTGCAGGAGCAGAAACTGCA
AACTGAAACGAGACTGACATAGTTCGGGCACATACTTATGACAGGGATATTCTTGCAGGC
GTCATGTTCCATGATCGTGGAGAGTAGGAGGAACCCAGACATGGAAGGAAGTTCAACTTC
AGTGAGGACAAGATCTATTTTGAACGATTTTTCCTTTAGTAATTCCCAGGCCTTGACACC
ATCAGAAGCCGCAGAAACTGCAAGAACAATATGAAACATAAGTCTGAGAAAATGTTACAG
GCTCTGCTAAAATCGTCATGAAAGTTCTAGCAGAACAAATTCAAAGGCCCAACTTGTTGG
AAAATAAAATACTCTGTCCGCAGAAAATTGTACAATTTCAACATATGTCTAACTGTGCTA
AAATCATGTTAACCCATAACTAAGTGTGACCGTACAAGTAATTATGTTTAGTTAATATTG
AGCACAATTTAACACCAGACGCCCCAAAAGGCGTGGATTGAAGCGTTCAAACCGTGTTCC
TTTCCTAATCGACACATGCCAGCGATAATACGGTATTGGCGTCGGTGGCTGCAGAGCAAA
TTTCGGAGCGATATTTGAAGAGAAAAAAAAAATTAAGGGATCTAACTATCTGACGAACTA
GGCACCAGAACTAGCATATCTGACGAACTTATCGTGTGGCTGCTGGGAAGTGGATCAGAC
CAGAGGAAGCATCCTGTGTTCCTGTTCCTACCTACCGCGCCACCATGCCGAAACACTGAT
ACGAAGCTGAACTCTGTAAAACTGGCAGCTACCTCCCGATCCGCCCGCACAGCACCAACC
GGAACTCGAATCGAACTACCAATCCGGGAAATCAACAAAAGCTGCGGCTGCCGATAGATG
GATGGATGGATTGATGCGAGGGTAGTCGAGGTGCGCACCGTGGTAGCCGCACTTGCGGAG
CAGCGCGGAGATGACGTGGCGCGTGGAGTCGTCGCCCTCGGCGAGCAGCACCCTGACGGG
CATCATCGGCAGCGCCCGCCGCACCTCCTCCTCCCTCCCGTCCTGGTCCACCACCTCCCT
CTCCTCCACTCCTCCTCCTTGTCCTTGGCCGCGGCGCGCCATCCCGGGCGGCTCTGGCTG
GTTATCTACTCGCCGGAGCTCGGCCGCCTCGACTCGCAGATCAAGTAGCCACCACCGAGA
CGGCTTCTCCTCCTTCTTCTCGCGCTGGATCGCTGGATTGGAAGCTTCGAAATGGGGATC
GAAATGCCAGTGGAGCTGCGGACTCGCGAGCGATGGAGACGATTAAAACTAAGCGGCCGC
AGAGGAGCATAGCTATATAGCCCCGACGCTACGCGATGCCGACAGGTGGGCCGGGGGCCG
CCGGGGCCCGCAGAGCCAGTGGGCGGGGACGAGGGCACGTGATGGGCGCGCGGGCCTCGG
GAGGGGAGAAAATCTCCGCCCGCGCGGGCCCGGCGGGCGGGGCCGCCACGTCACGCCGTG
CGCCAGCCCGCGCGGGATCGCGGCCGCGGTGACGTGGCATCGCCTGGGCCAGTGGTTCGG
CCAGCGGGCGCCCTGCCCACGCCGCGCGGGCCGCATGGGTTCGGCGAGGAGGGGGAGGGG
CGGATCAGGCGATATTTCGCCGGGCCCGCTGGGGCACGTGGTGGGCCGCGGGGGAGGGAT
CCTGATCCGCGGCTGGCGCGGGAGACACGTGTTGGGTCGGGAGGCGCGCGCGCCGCGGAT
GGGTGGCTTTCGATCCGGTTTTAAAATCGTGCGGCTGGGGGAGAGAGGCCGGGGGCGTGG
ACGGGGCCCGCGGGAGCGTGTGGTTCTGAGCTTCGTGGGGGTGTGGTGCGGCGGTGCGGG
GGCTGGGTGGTTGCCGTTTCCGCACGGTGGGGCCCCGATAATATCTTCCGCAGCGCAGTG
GCACTATTAGTACTACTTTTTTTTTTTTGACTCGCGTGGTAAGTGTACTTGCTGCTTCAC
CGACCTGTTTATTTGTAGAATCATCTACAACCGCTCGCCTTGTCTCCGGATTGGTTGATG
TCTAGTCATAAAAATATAATTCAAACGAATGTCTTAAACGGTTTCTAAAAAAATGTCTTA
AACGGGTTTTAAACGTTGAACGGCATTCCTCATATCCAACATAAATCTAAAACGGATATG
GGACGTCCGGACGCGTGCTTGCGCGTCCGCCAGACAGGCCTATCCTACCACACATTCATC
AAACCCTTCCTCCTCCTTCCGCCTTCATTTTTCCTTTCTTGAGACCGAGCCCTTGCCGTC
TCACACCCTTGCTCCACATCCTCACTGCGAGTCCCAATCCGCTGCCCAAGATGTCATCAA
GCCCACCCCGACCATCGTGACAGAGGTTCTGTCCGTCGCATCCGTCGGCGTACCGCCCTC
GGCTTTGTCCTACAAGCGAGAGAACATCGCCCGGAGGAACCGGCGCCGCAGGCAGCGAGA
GAGGTAAGCGGTTGTGACGTTGCAGTGAGCGGAAGGGGAATGAAGGAGCCATTGCAAGCC
CCCCAGCCTTGCGCGGAACCCCACACCACATTTATTTGTGTGGCGACAAGGATTGCATCA
TCGGACTAGGTTGGGACAGATAAGGATCTGATGGACAGCTAGGGCATTCCAAACTACTTT
CTGCCAACGGACATGCCAACGACGGACGTGTGTCACTCAACGCAACTCGTTCGAACGCGA
ATAAGCACGTGCACCGGCAGAGTTCGGGCTGCCCACGACCTGTTCGACATAATGACACCA
CAAGACTCGGTATGTTCAATTACTCGTGTATGCTCAACTTTGCATATGGTATGTTCAACC
ACCGCAACTCGCACGAGACACCGAGGACGCGAAGATCATGTTGACGGATGAAACCCTCTT
GGATGAGCATGCAAAGAAGTGGATTGAGAAGAAGGAAAATGAGATCAATCACCGTAGGGA
GTACAAGGTGGTGATGGCGGCTGTAGCAGCGGCGGAGCATGCGACAACGATGCAGGCGGA
TCATGCAAGCAGGATGCAGGAGTTGTAGGCGGAGCATGACACAAGGATTGCCTCGGAGCA
GGAGACAAGGATGGCCTCACAATAGAAGACATGGATGGCATCCGACGAGTGATCCGGCCA
GCTAGCAAGCCATCCGTCACATTCGGACATTGATTTTCATTTTACCATGTGTGGATTGTT
GAACTATGATTTGTTTTAATTTCTTTCAGAGCGTCGAATTCGGACAATTTGTATCATATG
ATTGACGCGCAAGGATTGCATGGATTTGAGGTTCTGTATTTAAGGTGTGTGGATGTGTGA
CAACCCATATGAGGGGTTGTCTAGCGTTGTCTGCGGACGTGCCTAGATGTGCCCGCGCAC
GTATATGGGATTGAATTTGTCAAATCCGACTGTAGATGGTCTAACACACTTGTCATGTTC
TTAGAGCATCTATAACCAAACTTGGCAAATCCGACCCCTCAAACGTGTGCGGACGCGTGC
GGACACGTCCGTGGAAACTACCTGGTCAAACCTCAAATTGCCCATCACACAATCAAAAAT
AGCATACCACAAATCCATACAAACTCATTCAACTACGTATATGATGATTACACACATCGC
CCGACTACTACATGTGGACATGCAATCAGATTACCAACTTTTGACATGTTTAACCTTCAT
GATAGCTATGGAAAAGATCATCCACGACTGCCCTTGTCATCCTTCTCATGGAAGTAGCAG
TCAAAAACACAGTAGGGATCGAGTTGGATCAGCTCATCGCCGGAGCTATCCGATCCATCA
TTGTCTCCTTCACCTCCTCGGGGCGGGGTGATACATCTCCAACGTATTGATAATTTGAAG
AATTCATGCCATGTTTGCCCATGTTTACAATAATTTTATATGGTTTTAATGAACTTTATA
TGATTTAGTCAGAACTAACCCGGACTGATGCTTTTTTAGCACAATTATCATGGTGTTGTT
TCTGTGCAGAAAATGAAAGTTCGCGGAATCGCCCGACACTTTTTTTTATATTTTTTGGAG
GAAATAAGCAATATTGGAGAGAAAAACCACCGGAGGGGAGCCACGAGAGGGCCACAAGCT
AACATGGCGCGACCCCCCTAGGTCATGCCTTGATAGCTTGTGGGGCCACGTGGCTCTGTT
CGGCGTGATTCCAACGCTGAAAAAATCCTATATATATACCAAAAACCTTAGAAATAAAGA
GATAACTTCCGCTTTGCCGCCGCAACTCTCTGTATCAATGAAAAACCAATCTGGAGCCTT
TCCAGTACCCTCCCGGAGAGGGGAAATCATCTCGTGTGGCCATCTTCATCATCCCGTCTT
GGGGATGCCCCGGAAGGCAACCCCCTCTTACGTCTCCAACATTACCGGTATATCTTATTA
GGAGCTATATTTTTATTCGTCACATNNNNNNNNTTTTGCTTGGAGCATCATTTCATTTTG
TTGTTCTCTGTTAAATGTTATTATATTCTTATTTTTCAATAAAAAGTTTTACGAATTACG
TTTAGAATGCTTAAATTGCATGTGTGATGTGTGCTATACAAAAATAGAAACTTTGCCTGT
AGTATTTGACTTATCAGATTTTACTGGTACGCGGAAAGTTTCGGAAATTTTTACATAGTA
ATGTAATACAAATTTTTTATAATGTTCTAAATTTTTAGATTTTTTTAAGTTACATAAGTA
CACTGTTTAAATAGATTGCTACACACTATTCTGTTTGGACAGATTGCTGTCATAGATTTC
TTATCTACTAATTCTAGAGTTTTCATGGCTTATATTGGTAGATATAAATTGTGAAAATAA
GAGTATACATTACCTAATGTTTGAAAANNNNNNTGCAACTTGTCTTGGAAGTACATTAAG
TGTTAATTTACTTTTATGTGTACTAACTTATCTCTCGAGTTCTTTTCAAGTTTTGTGTGG
A