Contig Data
morexGenes
Links



Map Locations of contig_41348 (8496 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41348

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57017 2 1005 bp None Available Available None
MLOC_57016 3 3440 bp MLOC_57016.2 Available Available LOC_Os02g57340.1, FRAME:+2, EVALUE:0.0, 13102.m06608 protein tetratricopeptide-like helical, putative, expressed





CDS Structure of MLOC_57017






CDS Structure of MLOC_57016






Contig Sequence (8496 bp)

>contig_41348 8496 assembly3_WGSMorex_rbca.fasta
GCGTGGCGCCCCGCCGGGCGGGGGCGCCGCGGGGCGCGCCCCCCCCGCGCGGCCGCCGCT
CCGGGAGGCTTCCTCCACCTCTCCCTCCTCGCCACCCTCCGCCGCCGCCCCTCGCTCCAG
GCGCACGCGCAGCTCCTCCTCCTCGGCCTCCCGCTCCCGGCGCACGCCGCCTCGCGCCTC
CTCCGCCCGCACCTCCGGTCGGGGAACCACCTCGCCTCGCTCCGGCTCTTCCTCCGGATC
CTGCGCGACCGTGGACGGCCGTCCAAAGCCTCCCAGGAGACGGAGACGGAGGCCGTCCCC
AACTCCCACTCCCTCTCCGCCGCCCTCGCGGCTTGCTCCCACCACGCGTCCCCCTCCCCC
GGGCTCTCCGCCCACGCCTTCCTCGTCAAGTCCGGCTACGCCTCCGACCTCTTCGCCGCC
AACTCCCTGCTCCATTTCTATGCGTCCTTCCGTTTACCCTCTCTGGCGCGCAGGCTGTTC
GATGAAATGCCGGCAACGGACACCGTATCGTTCAACACTCTGATCGGTTCGTATGTGCAG
TCGTTCTGTATTGATGACGCTTTCGGAGTATTGAGGGTCATGTTGGAGCGAGGATTCCGG
CCGGATGGGTGGACCATCACGGCGTTGTCGGGCGCATGTACGGGGCTGAAGGATTTGAGG
GTGGCAAAAGCGTTGCACGGGGTTGCCATGAGAGCGCTTCGGCCTGCAGCGTTTCAGTCG
CAAGAGGTGGTGATCGTGTTGGTGGACATGTATGCAAAGTGCAGGGGGCTGGTCCTTGCC
AGGAAGGTGTTTGATTTGGCTGGGGAGAAGGCAAGGGGTGTGAGGTTATGGACCACGATG
GTGTCAGGGTATGCAAGGTCTAGGGAGCTCGAGATGGCTAGAACGTTATTCAATGAGATG
CCAGAGAAGGATTTGGTCGCATGGACGGCTCTTATTGGTGGATTCGTGCAGTCTGGCAGA
TCTAAGGAGGCATTGATGTTATTTGACGAGATGGAAAAGGCGGGATTTGAGGCAGATGGA
ATCACGGTCGCTAAAGTTCTTTCAGCTTGTGTTCAGTATCGTGCGTTCGATGTGGCAAAG
AGGCTTCATCATCGTGTGAGGCATAATGAGCTGATTAGCACAGATGCAGGACTTGCTACT
GCCTTAGTTGACATGTATGCAAAGCACGGGCTCATACAGACAGCTATGGATGTGTTTTCT
GGTGTGGATGACAAATTGAAGACCGTCGAGTTGTTCAATGTTATGATAGACGGACTAGCG
CATCACAATTCTGGTGAGAAAGCGATTACGCTTTTTGATAAAATGAGATCGCTCGGGCTC
CATCCTGATAAGATCACGTTCACGGCAGTTTTGTGTGCATGCAGCCGCGGTGGCTTGGTG
ACACAAGGGTTTGACATATTTAATTCGATGGTTGGCAAGTATGGTGTAGAACAGGATATT
AAGCATTATGCTTGCATGGCTGATCTCCTTGCAAGAGATGGACGGCTTGACGATGCTTAC
CACTTTATCCAGAACATGCCTTTCAAAGCAAATAGTGTGGTGTGGGCTTCTCTTCTGAGA
CAATGTGAGATCCGTGGAAATATGAGGATTGGAAAACTTGCAGAGGAGCAACTTCTTCAG
TTTGATCCTAGTTACAAGCCTGAAAGTGAAAGCCTCGTCTTGTCTGACATATTTTCGGAT
GGAAGGAAACAAAAGAGGGCTGCAAGGGTGAGAAAGGTTATTCACCTCAAACCTAAGCAC
GGGCATACAAAATAGCAGTATAGGTTTTGAAGACACAATATGTATGGGGAGTAGACAGCT
CCCAATATAGTGAGATGGTTTCTGTAGCTTTTGGGTTGGTAAATTTAGCCACAAAACGGC
AATAAAATTGTCAGTAATCTTCGGATGCATGATGGTTCTCATCTTTTTCAAGTATCTGTT
GAAGACTTACAACAGAGATATTTGTATGAATGATGGAAGTATGGAACCAGGCTCCATGAA
ATGAAACAAGGGTCATTATGTTCACAAACTGCAGGCAAGCCTCTCTTTCTTTTGTTTTGT
TTCTGTGCAGTGCATGCTTAAACTAAGCATGTGTTCAAAATGTTGGAGATCTAGAACAAT
CCACCTGTTAATTAAGATCTAAGCCTAAGTGAGTTGATCAGAACTAACAACAGCTGACCT
AACTCTGTGAGAATCATATCTGAACATAATATATATTTTTTTTATCCGAACACTCTCTGG
TCAATGAGCTGTTGAACTGCAGAAAGGAAAACGAGAGCACAGAAAGAAGCTCACAACTGC
TTGTTGCAATGGCAAACTACTGACTTTTCTTCATCTTTGTTCTTTAAAATGTATGTGTTT
CCAGATAAAAAGATTTAATTTTTAAATTACTTCTACAATTTTAAACCTGCATTTTATTGT
GTCCTTGTTTCAAATATTTAGATTGCTCTCCTTTTTGTTAGCTACTAAGGATTATCTGAA
GTCAGATTGAGCATCACTCGAACTAATTTATTATTGCAAGCTCTCCTTTTCATCCATAAC
AGTGTCAAGAAGTTGGTGACCTACCACAACAATAGCTAACCTTTTTGTTTGTGCTCCACC
TTTTTGCTCTCAGTATAAGATACCACAAACACACTCTTCCAGGAGAGTTGAAGTATCACG
GCCAAAGCTTAAGACAAGGTCTAACTGATCATGGCAAAGGTATGTTCTTTCGAGCATCTA
AAAATATGTACAGATCCATGGTACAGCTAGTTCTCCATATTGTTATGAGATTGTGAGGTT
CTTATGAATGTGTGGCAGGAACAATGCAAGGATAACTTGCCGAAGACTTATGTTCTGAAG
ATCGTCATGCACTGCCATTGCAATGGTTGCATCAAGAAGATCAATGACGGGGTGAAAGAG
ATTGCCCTTTCAGAAGGTACATATGCAAGTCACTCATATCAGCATCTCTTTGTGATAGAC
TGATGTTATATTTTTGTTTTTATGCATGTCTGCTGTTTCACTGCCTTTATGAATTATGTA
AAATTTTGGCCTTAATGGTTATGAAGGGGTTGAGAGGGCTGATCTGGTGGCAGAAACAGC
AGAGGTGATAGTGGTCGGGAGAATGGACCCAGAGAAGCTCTGCTGCTTGCTGCATGAACT
AACGCAGAAGCATGTGAAGATGGAAACCAAAAGAACCGTGACCGAAGGAGAAACTGCAGC
TTCTTGGGAAACCAAGAACCGCGTTGGCCAGGTACCATTGTCTTCAGGCTAACAAGTCGA
TCGTCCATCAAAATTATAATGTTAATCATACTATAGTCAAATGATAGTGGTAGGAAATAC
AGAGCTGGCTATTGTTAAATCGGTCTAGCATTCGTTTTGGTCCTATTGATGCAGTTATTC
CTTCATGTTCATCTTTCGCTGGGGAAACAATAGGTACATAGGAGTTAGGACACAGAATGT
ACACATTGCACTAAATTAGGTAGGTGACCTGCTGAGCTACACATTTCTTGTAAGCGATGT
TGTTTATGCCCAAACACCATGTTCATATTTACCTCCATTTCTCAACTGCTACGCGCCAAG
TAGGAAGATAGTGGGTCACCAGCTATGAACCATCTGATATACGATGCACTGCATGATCAT
CTCAATTTCTCCAACTGAACCTTTCAGGCTACTTCCGGCTTGTTCGCTTCCGACACACCT
ATTACGCCGAGCGCGCCGCCAGTTCCCGAGGCATGGAGGAGCCAGACCGTGCCTTCCCAG
AGATGCGCATACCGTTGGTCGCTACCTTTGCCCGGCGCGCTAGGCGTGTGGGCTGCATCT
GACATCGAGGGGACAATGGCGGTCTACGACCTCTGAAGGCTTATTCACCAACACAGCCAG
CAGACCCTCCTGCACTCCATCGTCACCTTCGCTTTGCGCTAGCTGATTTTTTGTCGCATA
AGCATTTTCTGCCAAGAGCTTTAACTGACGTGTTCTTTGTTTCTATCCGTGGCTTAATGA
CACGGACATTCTCTCTTTTGCTTCGTTGTTCATTTGTGATGTTGTGCACTGCAGTAGATA
GGAATCCAGGGGAGAAGTGTAGGAACTGGGGATGGAATCCCAAGTCCTGTGGGCTGCCTG
GAGTTAGTGGGCAGTCTTTGCTGCTGCTGCTCTGTTTTACTGCTGGGATGAGTTGTGCAA
GTAAATTTGGTCTAAGGCCCTAAAATATCAATAAAATTGTCAGCAATCTTTGGATGCATG
CTGGTTTTCATTCTTATTATAAGTGTCTGTTGAAGATTAACGGCAGAGATATTTGTTTGA
ATGATGGAACCAGGCTCCATCAAACAAAACAAGGGCCATGCTCTTGCATTCACAACTGGT
GATGCTAATGCAAATATTTGTGGACAAGCTATGACATTATTTGTTTTTTTTTCTGTGCAG
TGCGTGTGTTCGAAACGTTGGAGATCTATAAAAATGCACGTGTGTTAAACATAAGTGAGT
TGGTCAATAGTACTACCGACAACTCACAGTTTAATGCAGATTGACAGCTGACCTATCTCT
GTCAGAATTATCTGTGAACACTTCATGGTCAATGTGCTGTTGAACTGCAGAAAGGAGAAT
GAGAGCACAAAAAGAAGCTCACTAGTGCTTGTTGCATGGCAAACCATTGACGTGTATTCA
TCTTTGTTTTAAAAATTTGTGTGTTCAAGATAAAAGCATGTATTTTCAAATTACTTCTAT
AATTTCAAACCTGCATTTTATTGCAAATATTTTGTACTGTTCTTTTCTTTGATAGTTTTC
TTTGTTAGTTACTCGTACTGATTATCTGAAGTCAGATCGAGCATGATTGGAGCTAAGTAA
CTTATTATTGCAAGCTCTCCTTTTCATACTCCCTCCGATTACCTCTCGATCGGTAAATGG
ACGGATTAGCCACAAATCTACAAGGCCCCCGATCGCCAACCTTGAGAAGGTCGGTACACC
TCACTTTATACTCATGAGTTTTACCCGTGGCGTCAACACCCTTCAATCTCCCTCCTTTAT
ATGCAGAAGCACCACCTGGCAATCCAATGTCAGATTAGTCTAACCATCGCAATAGGACTA
GTGGATAATTTTTTTCTCAAAGATTATCATTCCTACACCTTCATATAGTCAAACACATGC
CATCAATGTTAACAATTATCAATTCTTGCGAACTAACCTGTGATTGAATTGTTACTAGGA
CAGCAGTATCCTCGACCCACCCGCCACTAGGGTTCACGTCCTAGACTTGACACTGATGCT
CGTACTTTCCTAAATTTATTTCAGGCTTCCAGCGATGTTTGTTTAGTGAGGAAAAAACGT
TTCCCCTGACTACAATGTGCATATGTTGACTTTGTAAAATATCAAGATGCTATGCTAGTT
CAGACTTTCGAAGATACTCATACGGATAGAATGTATGCGCGTGTGCTTATATGAGTGAGT
GTATGCTTGTGCATGTGCATGACTTCAATTGTGCCGTGTTAGTAAAATAGTAATTACCAA
TTCCTTACTTGTTTTGAGGATTTATTCCTTACTTTCATTTAGGAAGTTCGTTTTAGAGCT
TGAAACTTTGAACATGCATGCGCCGGGCGGGACCCAATGACGCCATGTGGGGTTGTGTGG
TGACGTGGTGTGGTGTAACCCATGGCAAAAAACCCAAGCCCGAGCCCGCCTCGGCCTGAC
TGTTGGGCCTGTATTTGAGGCCCAAGCCTGACCCATCAAAGAAAAAGCCTGTCGGGCCTT
AGGACGTTGGGCCAGGCCCTTCTATAAATTGCAAAAAAATCAGGCCCGAGCCCGGCCTGG
CCCGGTTGTCAGGCCTAGACCTCAGGCCTAGGCCCGGCCCATGGGCATGGTCGGGCCACG
TATCCCATGGTTAGGTTTAAATGTGTTAGAAAAAATAATTACCACTTCCTTACTTTTTTT
TGGGATCTATTCATTGCTTTCTTTTAGGTGGTTGGTTTTAGAGCTTGGAACTTGAACATG
CATGCGCCGGGCCGGGACCCCAACGACGCAATGTGGGGTTGTATGGTGTGGTGTATCCTC
CTGACGCGGCGCAGCACATGCACGGCTCGACAGCCTCACCAAGCTCTAGTCACTGGGCTG
GGGTCTCTTCTTTCTTGGATTTACTAAAACACAACATGAGCTGGGGTGGTTTGCCGTGTG
TGGCATCGTGCCAAGTCAAGTCGTTAAAGGTGACGGACGGAGCATGCATCCATCTATCTA
TCTCACGCGGCGCGACACGTCCATGCATGCATGCATGCATGGCCCCGCTTGTGCAGTGGT
ACGTTGACCGGCTGGTCGTGACCGTGCCTCGCCCGTCCACACACCTGGCAATCTTGTTGG
CTCGTCACGTCTCGCTGTATTATTTAAGCCGCTTCCATAGAGCCTTGTGATTCCTCATCA
GCTCCGGTAGTTGCTCCGGTTTCAGCTCGTTGGTTCGGTGTGAGAGAGAGAGAGAGAGAG
GGAAGAAGATCGAGGAGGAGGATCCATCTGCTCCATCACTGCCGTCGATGGGGAAGACGG
GCGGGGAGGCGGCGAGGGAGTTCGTGGTCAGGGTGCCCATGCACTGCCGCTGCATCGGCT
GCAGGAAGAAGCTGCGCGCCGCCGTGAGGGGCCTCAGGCAGGCCGCGGGCGTGCAGGCGG
TGCACCAGTCGGCGGCGGAGGACACCGAGGAGTTGCGCCTGCTGGCCACGGCCGACCCCG
AGCTGCTCCGAGGGCTCGTCCACAACGTCATGGGCAAGCTTAAGAAAGTCGACCTCGTCT
TCCCGCCCAAGAAGAAGGAGCGCTCCAGCGCCGGCGCTGGCGGCGGGAAGGAGGACCCTC
GCCTCGTGGACGCCGCCGCCGTCCAGGGGCTGTTCGCCGATCTGCAGAGGCAGGCCCCGC
AGCCGCGCTATCGTCAGCACGACCCTGCAGACCACCACCAGCACCAGCAGCAGCATCAGC
GACAGCCGGAACTCTGGTGGAACACCTATGGCCCGGCGTACCCATGGCTGCCGTCCTACT
GCCCTGGCGCGTCAGCACCTGCTTGGGAAGCGTACGGGCACCCTCCGCCGGCGTCGGCAC
CACCTGGCCCCTACGTGCCCAGCGCGCCATGGTGGCCCGGCGGCCCCGGCTACTGATCGA
TCGAGCGGTCGAGCCGAGCCGGTCGCACCAGTCGAGACGAGAACGTATGCCAGACCTCAT
CACGACAAGACGCCGATCCACATACATATATAGAATTACATATAGATATACGAGTATATA
TATATATATATACTTCGTATACTTGTATCTCGATCGATCATTTGCTATAATTAATAGTAC
GTGCTGCTAGTATAGTAGCTAGCCTGAATAATCTACATATTGTATTTGTAAGTTCACGTA
TATATATGCATACGTTATGTTGTTTGCAGACCATTCATTTCGTGACTCTCTTTTGTCGAG
AAAAGGCCATCATAACTAAAGAAACTTGCTCACCTTGTCAGTCCAACTAGAAGAAATTTT
ATTATAATAATAAAACTAGGAAGCGTTATGCTCGTTTTCTGACTTTTGATTATCAATAAT
CATTCACCTACGAAGGGTTATGAAAGTTTTTACGTAAATTCCCCTTACTAAGATCATCTC
CAACAACAGTCCAACCCACGCGCGCTAAAAACCTGTGTAATCTATATGCCACGCGCGTCC
GATGAAACCTTGCTATTACGCACGCGTTAAAAATGTCAAATTTGAGGCACGGTGCTGTTT
TAGCGCGGTTATTGGAGATGCTCTAATGCTTAATAATATATTGTCAACTGGCTACCCACG
TAAAATTTACACAAATATCTTCGTAGGTGACAGAAAAAAGCTTCAACGGTATATGAAAAA
TGTTTCAACGGTATTTTGCTACAAGCATCATGGCAGAGCTGGGACCGATGAGGAGGGTCG
CGACGGACGGCGACCAGGGATGACCGGCGGTGAGAGAAGATGAGGAGGTGAGGCGTGGGG
TGCGGCATGTGTGGGGGCGACGCCCTCCTTTTTCTCTCTTTCTTCCGTATGGGAGGTTGA
AGATGGGATGCGGAACATGAGAGGAAGACCTGACGGTTACGCGCGTGCAAACCGAACAAA
TCCGAGCTGACCGGTCGATATATTGGGCCGACGCGCCGGCGCGGGGTACTGCTCCTTAGA
GGAAGGACCATGTAAAATGCATGTGACTTGTTTGTGTATTTAGCATTTTTGTTGGTTACG
TGTCCCCGAGCCCGTGACGCGTTCGTCGAATGGAGAGCAAAATAGGGACCCAACAGTTAC
ATGTATGATCATTCTCCTTTTTGATGGTTTTGTTGGCAATGGAGTGATAGAGGAACCGAG
TAGTACACCAACGAACCCAGTAGCTCATGTTGAAGGAGGTCCAATCGACAGTGCGATATG
CAGGACAGTCGACGAACGCTTTTGCAGACCTGAAACCCCGTATGCTTGGGAAAGACCCCG
TCAGGGAGTGCGGCAGCTATGGGCTGCCCTAGGTCGATCCGCTCGTCCCTAGAGCCTCGG
GATTCACATCTCTCAAACTCGAGAAACAACGAAGAA