morexGenes - Barley RNA-seq Database

Contig contig_41324
Source Contig contig_41324
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41324 (8546 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_41324

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56995	11	2358 bp	MLOC_56995.11	Available	Available	LOC_Os01g03100.1, FRAME:+1, EVALUE:2e-135, 13101.m00261 protein protein binding protein, putative, expressed
MLOC_56996	1	256 bp	MLOC_56996.1	Available	Available	None
MLOC_56997	4	2778 bp	AK370438	Available	Available	None
CDS Structure of MLOC_56995

CDS Structure of MLOC_56996

CDS Structure of MLOC_56997

Contig Sequence (8546 bp)

>contig_41324 8546 assembly3_WGSMorex_rbca.fasta
GTTTTGTTTAAAAAATTTCAAATTTCTCAAACAAATTAAAAATCCTCCCTTCCCCCCCCC
CCCCCTCTCTCTCTCTCTTTGGTAGGCATACTTCATCATGATTCTCTACAGCTCTTGCAA
TACTGAGAAAATACTTAAGTGCATCCGAAACCTTCAACGAAAATACTTCTCCAGATATAT
TGCATTGGGGTTAAAATAATCCTTCATAATCTTCTCATAACCATCTGCTCTACCTCGATT
GATGTACACGCGGTTGAACTATGATCCTAGTATCGGTTTCCCGCCTTCACTATCACAACA
ATGGCTCTTTCAAAATCATCATCTTCTTCTTACCTCAACCTCTTCATATACACTATGTAA
TATTCTAGGATGAATCTGATTACAAAACAGAAAAAGTGATAAAAATACCTAAAACTCGCA
CCTAAGCAATTTGTCGAACACTTTGTGGGCGAAGGAGGTGAGAGCGACGTTGAGTCAAAA
TCAGAGCTACGGCTGGATGGTTGATGGGTCGATAGAGGACCGATGATACTTGGTGGGCCA
GTAGACAACCGGCAGTAGACTGCGGGCCTCAAATCAAACTCCTCGATCGTCGACCAAGCT
CCAAGGTCATAGGCAAAGATCGACGATCTTGTAGCGATAACGGCATCGCTAACAACAAAA
AGAAGTCCTCGACACGTGCTCTACGGCATCTCCATCATCTGTCGGCTATATTTTTGAAGA
AACGAACTCATATGATATTTTTTTCGGCCACCGGGTCAAGGAGGCAGCGGCGGAGATATG
TTTTGATTCCGGCTACGACGGCGACCGGTGGACGGATCGAAGTGAGACATGACATCGGTG
GAGGCTACGAGGTGTCGATGGGCAGGTGGTGCAGTCTACCAGTGAATGCCAGATGCAACA
CCGATGATGATGTTGTCTGAGCGGGTGGAGGGGCTACACCTCCTCCCTCTCACACTGCTT
CCTCCGTTGCTCCACCTGGGCGATGTTCTCCGGCTTGCAGCTCGTCGCCATGGATGGAGC
GTCACGGACAGCGTCGAGGCAACATCCATCGCGCCGGCGAGGGATGGGGTACCCGATGAT
GACATCTAGGATGGTGGAGTAGCGGCACAGACGGAAAGAAGGATGGAGGTCAATGATGGC
TAGGGCACACGAAATGGAGGATGGACGCGGGGAAGGGTAATGGATTTGCTGGACTTGATC
AATTTGATGCAATTTGTGATGGGACCTGCTTGACGGATCTCACGTGGTGACCACGTCCAA
GCGTGTCCGGACCTCCTTATCCGTCTGAGATTGAAGTTAGAAATGAAGTGTGTCGGTCAA
CCTGGATGTAAGATAATGATTTGAGAAGCTCGACTGAGCCACAATTGGCATATCCAAGCC
CCTATACGCTCTCTCGCAGGCTCGTCCGGACACACACGCTGGCATTGATCAGACCGTCCC
CATTTCCCGGGAAAGCTTCGAGTGCTATAGTTGTAGATGCTCATACTGCCTCGTGTTCTT
TCCATTTCTCAAAAAGAAAAGGTTTACTCCTCCTCCTTCCAGTCCTTCGTAGGGTAAACC
CACCACCTGCTCCGCTCGTGCAGCTAGTGGTGGGCCACCTACACTACACTAGAAGGGATC
CATCCATCCGCATTCCCCGCCGTTCTTCAACTACGACGGTGCCGAGAATCTTCCAAGCTA
ATTAACCACTGGGCGGCACGATTAGCAGGCCATGAGACGACCGGCGTGTTTTCATGTAGC
TGCACAAGAAACTTGTGGTAACTTCGCGATCTCCGGTCAACATGTGTCGTCGGTACAAAA
AACAGAAGCTCATGGCCAGATTGGTCTAACCATGTGTTCCATAGAACAGTTTACAGTTGA
CAGGGCCAGGGGCATACACATTGTAACTGTAGACTCATGGGTCTGTCTGAGTCTGAAGAC
CGTGAAGCAACCTTGTCAACTGAGAAAAGGGAGTCCTGAAAGCAGCGTGGAAAGTGAGAA
GGAACAGTGATACAAAAGAGCAGGGGTATCAGTGAAGTTGTTGTGAGGTGAGGTGAGGCG
AGGTGATCCACTGACTGACAGACACACAGATGCATATACCACTACTTATTCCCATCATCT
CCTCCTCCTCCTTGACCTTGCCCTGCTTGGCGTTGCCTCTCTTCTAATTTAAATCCCAGG
AGAGGGGAGGAAGGAAGGAAGGAAGGAGAGGGAGAAGGAGGCGGGAGTGATCTGCTGGTG
TGTGGCTTGGCCTCCATTCTTTTCTTACATCCCCCTCCACTCCATCTCTTGCTTCCCAAA
CCTTAACCCCCCTCCCCCTCCCTTGCCTTAGCCAGTAACCTCACCCCAAATCCAACCTTC
AAAGCTTTCCTCCTCCTCTTCCCCTTCCTCCTGCCGTCTTTGGGGCGAGGTAAAGATTTC
TACACCCTTTTTATCCATCCATTTCTTCTTCTTATTGCACCATGGCTTCCCTGCTCATTT
CCAACTAGCCATATTCAGATCACTGAAACCTCAAAAGCCCTCTTCGTTCAGTTCAAGCCC
TCTCCTCCTCCAGGTGAGCTTCCTTGATTGCTTCTCCCGTTGCTCTAGAACGACGCGCTG
CACATTCTTTTTCTGCTGCCGAAGTAAAATAAACAGCAAGGTTTTGGCCTCTTCTTGGAA
AGTCCAGAGAATTTTTGGCCTCTTCTTGCATCTCGATGCTGCTATCGATGCTGTCAGTGG
TGATCCCAGCTGTTTCCAATTAGACAGAAAATCGGCTTTGTTCCTGGCGGTTGTCGATTT
CTTTACGCGGTTGGAGCCAGCAGTTGCGTATATGCTCGCGTTCCTGAGTTGCATTTGCAT
CCCCTTCCTGCAACTCAACCGCACGCCCGAGACACGCACACAGAGTGCAGAGGATAGAGG
CGCCATGGATGATCATACCTGCGTCCGCGTGCGTGCTTGCAGGGCCCATGGGTGACCACC
TCGCGCTGCTGGTGGACCGGCTGCTCACGGAGTCCACGCTGGAGGCGGCCATCGGGAGCG
GCAAGCAGCCGGAGGCGGTGGCCATCGAGTACTGCTGCGGCCTCCCCGCCGCCGCGGGCG
ACCGCGGGCCGCCGGCGCCGAGCAAGATGGTGGAGTGCAGGATCTGCCAGGAGGAGGACT
GGGACGCCGGCATGGAGGCACCCTGCGCCTGCCGCGGCAGCCTCAAGGTGATTATTAAGC
ACAACAGTGTTCAGAGCGCCTGAATTTTTCTTTCCTTTTTGGTGCAGTTTTGCAGTAATT
TTCTGATGTGGGGTGGGAAATTTGATCCTTTTTAAGAGATGGAGTACCTAAATGGTGTTT
CTGATTTTAATTTTGGGTGCCTGGTTTGGTTTCCAAGCACTACTATACTACTGGAGTGTA
GGTTTGACTTGCCATGAGGAATTTTTGTCATTTATATTTATGGTTGGGGTTAGATGCAGT
AGGTTGTACTCCCCCGTTTCTAAATATAAGTCTTTCTAGAGATTTCACAAAGGGACTAAA
TACGAAGTAAAATGAATGAATCCACGCTTTAATGTATGTCTATATATACAGCCGTATGTA
GTCTTTTAGTGAAACCTCTAAAAAAGACTTATATTTAGGAAGAGAGGGGGTAATATTTAA
TTAAGTATCTGGAAAGCTCAGTGACAGATTTGATGATGATGAAATCAACCTTGTTTGCCT
CAATGCCAATGTAGCTTGCAAGGCAATGCCTAATGTTGGCCTTCCTATTTGGATTGTGAC
ATAAACTTAGTGCTGAAAAATACTCCCTCCATATATGCTCCCTCCGTAAACCAATATAAG
AGCATTTAGAATACTACTTTAGTAATCTAAATGCTCTTATATTAGTGTATAGAGGGAGTA
GTTCGTAGTGAAATATTTAAAAATAATTATATTTGGGAACGGATGGAGTAGAAATTAGTG
TGGTTTTGACTTGCCATGAAGAAATGTTGATATTTTTGGTTGCGGTTAGACATAGTAGGT
TGTATTAACTAAGTAGTATGTGAAAAGGGGTCAGCAATTTCAGGATGAAATCCACTATGT
TTGCCTAAATTATAGCTTGTAAGGTAGCAATGCCTAATGTTGGCCTTCCTTTTTGGACTG
TGACAAGCATATATAATGTGCAAAAAAAAATCTTTCTGAATAAGAGTAGGTGTTTTGTAT
TCCCAAAGTTGGAAGCAATGGAGAGAGCTATATCTAGACCATCATCACACAATGCGTGAG
ACAACTACCTACACCATGTTCCACGCAGGGTCAAATGTAGCTGAAACTTTTAAGAAACAT
TCTGGCCTTTTGTCCTTTGTCGATGATTCTTCTCGCGTTAAATGATCCATTATCATCATG
ATAGAGATATGCTTGGAATCGACTATGAAGACACCGTATTTCGGTCGATTATACCGGTGA
ATGACATCGGATTACACTCTTGGTTTATTCCCCTTCTTGCAGTACGCGCACCGGAAATGC
ATCCAACGTTGGTGCAACGAGAAGGGCGACACCGTCTGCGAAATATGCTTGCAGGTAAAA
AAGAAAGAAAAGCAAACATTGATATTTTTGCTTTGTTGAAAAAGAGATAAACGTGTGTAT
CTTTAGTCATGTAGGTGCTTATGAACGCTCTCTTTCTGCAGCAATTCAGGCCAGGTTACA
CTGCCCCACAGCAGCTGTTCCACTATGGAAGCATACCAATGAACTTCAGGCAGGCAGTCA
TTTCACAAGCTTTTTCCTGGTGCAAAACCATGGTGATTTCTCTTCTCTTTGTAAAACGTC
TCTCGTGACCACAGGGGGAACTGGGAGGTTGTGCGGCACGATTTCCACGACTCGCAGGTC
ATAACAATGGTGCCCTCGGAGCGCGACTTCATGGACGAGTACGACGACTACTTTCCAGTC
AGGACGAGGAGCAGCGCCCTGTGCTGCCGGACAGTCGCCATCATTGTGAGTTCATCAGAA
CACGTTGTGTTTGGATCCATGAAGGGCTTTCTAATTAACAGCCAGCAATGTCATTGTGAT
CCAACAGTTCCTGGCCCTCCTGGTTCTCCGGCACACTCTCCCTCTCATGATCGGCGGCGA
CGGGGAGTACTCGTTTGCTCTGTTTCTGGTAAGATCTATGAGCAACATTACCTAAATTAG
ATCACGCGGTGCCAGCATTTTCTTCGGTGAATTTGATCTTGTTCTTGCATTCAGTCAATC
AAGCCTCTGATCTTGTTTTGAGTTTTATGGGGAATGGGAAAAAAAAACAGCTTCTTGTGC
TGAGGACCGCCGGAATTCTGTTTCCGATCTTGGTGATGGTGAGAGCACTGGCGACCTTCC
ATCGCCGTCGTCGCCAACAGGTAATCCCAACACTGAATGATCAGCCATTGTTAGGGTTTG
GGACCTGGTTAGGTGTAGTAATCCTGATAACAGCCAGCAGTTGAGCACTGCTACAAGTTT
CATTTACACTGCAGAGCTCTGCGTACACTATTTTCTGATGCATAACTCTGGGGTATAGAT
CACTTGATACTGCAGGGAAACCAGGAAGCTTATATGCTCTTCTCGGACACCGACAATGAC
GAAGAGGAGGAAGAAGACACCGACGATGACGAAGAGGAGGAAGAAGAGGACACCGACGCC
GATGCTGCGTGGCTGTGACTCACTCGCAACCACGCCTTATCCCGGTCTACTGACACCAAA
CAAGTTAAAGAGCGGCGCCACGTCGGCGTGGTTAACAGCAACAAAGATCCCAAGAAACAG
GGGGAAATACACTGATGTAGTAGGATAGTCTGAAGCCACTCACTTCTGTGTGCACAAGAA
AAAGAAGAATGTGGTGGCTCTGTACATACCACAGGACTAACCCAGACGATGTAACTTGTG
AGCTTCTCCAGCTCTCCCATGTACTCAAGAGATTACCTAAAATTACTTGCAACTGGAAGC
AAGTGCAAGCCGGTATCTGAACCTGTGATCCTGCAGCTCATGCTTGATCTACAGTTCTTT
GGTTTGTCTTACCGACAAGTGCATGGACTATTGATCAGTTTACTGAGCATACAAATTTCT
GTACATCTGTTTGCAGCATTTGCTTGATAAGCTTTCAAACAGTACAGTAATGCGGTATTA
CCCAGCCATAACAAAGCACCATACTAGCGAATAACGTATCCGACAAGGTAAATTATCATC
CATGGAAGAACAGCTGTCCTGGGGTACATTGTTACTCACAGGTCTGATAAGTTAGGAACA
AGAGAGGGAGGATGGATACATATACATATATTTCATGTATGCAGGAAAGCAACGGTGGCG
ATGCAAACACCATCGACGTTTGGGTAAGCTTGCACATGGTCGAGGTACTTGAACACCACA
GCATCGCTGGTCAGCGCTCCTTCAGATAGCGTGGCGCCCAACTTTCTCTGATTGAAGTTC
TCCACCTCCTGCACTAGCTCATCCTTGGTCCTGCTGCAGGATGTGATCACCTACACATAT
GCACAGGTAAAATCAGAGGATAATTCATTGTTTTTCACTTGGTCATCTTTCTCAATAATT
AATTTTACTACTGCCAACAAATGCAATGGAAGTACTGACCAGTATGCCACCAGGAGAAAC
CAAGCTAGCCACTGACTGCCAATACATCATTCTGAAATGCAGGTAACAGAAGCAAATTAA
TACATGAAGACATCAAGTGATCCCATGCTTTCGTCAAGCAATTCAAAGTGTTTAATTGCT
GTTATGAAGATTTACGATAATATCAGTCATATAAGGATCAAGGTACATCTGAACAGCTAA
GAATGCATTTACCTCTTTACAGGTCCATCAGGGTGGAGCCCTATTGCATCCAGAGTTCCT
TCATCCATCACAAGTTCAAATCTCCTCTCCAACTTCGACTCCAGAACATCATCAACCTGA
AAACATAATAAGATTCATAAATCTGAAAGGGTTCTTTCTTCATCTTTCAAGCACGGGGAC
ACTACGTTCAACATCACATACTGAAGCACAAGAAGGCGCGAAAATGTGGAAATGAGATAC
GATCATGTAATGTGAACATCTAATGCTCCACCGAGCAACTCACCAGGAAATTAATGTGCT
CAAATCCATCACGAATTGCGAGGTTTCGAGCAAGCTCAATTGCGGCTTCACTATAGTCAA
TGCCAGTTAGATCAGAAAACCTGTATATTTACATTACACATCAGTACTGCCAAGAGGTGC
TAATAATGAAACAGGCTAAATGCATAAAGGAATCTCATTTATGTACAGAAACCTGCTAAC
GTCATAGAGACGCATTTTGAAAGGAACAGGAGACTGCCAGCATAATCTTCCCCAAAGCAT
AAAAGAGTATCATATGACAATTTCAAAGTATATTATATGCTGTTTCCAAGAGTTGCTCTT
AAAAGACGTCTCCATTATGATAATTGAGAATCATATGATACTCCATATCTTTTAACATGC
CATACATAGACAAAATAAATAACTAGGGACTACCTACCACCAACTTGCCACTAATTGTGA
CGATCACATAGGCACCCAAATCTCAGTATTCTCATAAAAACATGGGAAGAAATAAAAATT
AACCGGAACCATCTAATCCATAAAATGCCGTGGGATGTCTCACAAACATGTGGATCCTGG
GGCCTCCAATCAGCAAGACATGCAGAGCCATTTTGTGTAATCTTCCTAAAATCGTATGCT
TTATTTATGTTGGGAATAAGAATCCAGAACCAAAAAGATAATCAGTAAACAATATGAAAA
GCAATCCATCGCCAGAGTATTGAAGTTGACAACAGTAATATTCATGTCAAGATTAGGTTT
GGGAAATGGAAGCCAACAAGTTAGTCAGTGTCCTGTTTCCACAGCATACCCTTGTTTTGC
AAGCTGCTGTAAGAGTCGTCCGCTCCCGGTTCCTATGTCAAGTACGCTGCAGCCGGACAA
ATCCTTGCTGGAACATAAGTTTTTCGTCCAGCCTACAAGGACATCCATGGCCTCGGTGCC
AAACCTGCAACAGATGCCACTCAGACAGTCATTTCACTCTGAAATTTTCAAGCAAGAGAC
ACTCTATGGAATCCCTAACTATAGATAGCTGTAGGAAACAGCTTGTCAGTCCAAAAACGG
TGAACAGGCAGAGAATAAGGACAACACTATGAGTTGTGATATTCATTTGGCCAATGAGCA
GTGTACACAAGCCTACATCAGCCAAACTCCAATAGAAAACAATACTTGCCCATATTTGCT
GATATCAGACCTTGTTGCTTTATTCTCAAATATTTTCTCAGGAGAAAGGCAAGTCTGAGG
AAGGCAAGAAACAGCAGGCTGTCCAAAACAGTTATCAGACAGAGGAAAAGGATGACACAA
TCAGTTGTGATTTCCATTTAGCCAACGGGCAGCATACACCAGCTTAGCCATAATTCCTTA
TACCAGATCTCATTGCTCCGATTCAAAAAAAAAACACGAGAAAGGCAAGTCTAAGCGGCA
TGCGTCACGTTTGTTTTGCATTTATTAAGAGGCAGCAGAGTACCTTGATTGCGCTCCTTA
CTGCTCTTGCCATGATGCTAACAAATCTAAAAACCTAAATGCTCATGATTCCATCAATTT
AGATTCAATATCAGGTTGATTGCTCT