morexGenes - Barley RNA-seq Database

Contig contig_413081

Source Contig contig_413081

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_413081 (2551 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_413081

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56982	1	1216 bp	MLOC_56982.1	Available	Available	None

CDS Structure of MLOC_56982

Contig Sequence (2551 bp)

>contig_413081 2551 assembly3_WGSMorex_rbca.fasta
CACCGGTCTTAGATATGTGGAGTGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGT
GGTGGCTTTGGGTGGATTGATGTATATTCTTGTTAGACTTTGTGGAATAAATAATAATAA
GATGGTTGCATGCATCGATTGATNNNNNNNNCGGGGGTTTAACCTCCTTCTCTAAAAAAA
AAAATCATTACTTGTCTAGTTGTCGTGGACTACTAGTTTGTAAAACGCAATCTCTAACAA
ATTTGGTACAGTCTGGGATCCATCTTGAACAACCTACGCAACCCTACAAGTTCAGTTTCG
CAAAAGAATGACAATATAAACCATGTGACTTCTTGGTACGTACAATAACACGGAGAGAGA
AGGGTCACGATCATTAGATAAGGTCTATCTTCACAAAGTTGCACATACATCACATAAAAT
GACATGTCTCTCAATACCACATGGTTCTAGATACTGGACAAAAAAACAGTGGCTAGAAAG
ATGACGATACATAGATGCATTGCGTATCATATACTACTGCCTAGAAAAATACAATCCGTA
ATTTGCTCTGGATCCTTCTTGAACAACCTGCACAACACTACAAGCCCGGTTTCACAAAAT
CATAAGCCTAAAGCTTTGCTACAGCAACGACTTATGGTTTATCTTGAGAAAAAGGTCTGA
TTCAGTACACGGGACATCACATATCTCTACAACTTCCACCAGTCCTGTGTGCTTTCAAAG
TAACTTTGATTGGTATCCAGCTAAATTTGTAAGCATTAGCTGAAGCAGTGTACACAACTG
CAGACAGAAAGCGTGCCACCTCATTTATAAATTAAGGTGTGGCCTCATCTCATCTATTCA
TCTTCACCTGCACCAAAACACATTGACAACATGAAGGCCTTCTTCCTCGTGGGTCTGCTT
GCTTTGGTAGCGAGCGCCGCCTTCGCGCAGTACGGAGAAGTTGTTGGCAGTTACGAGGGT
GGTGCTGGTGGGGGTGGTGCTCAACAATGCCCCCTAGGGACAAAGCTAGATTCCTGCAGG
AATTACCTGCTAGATCGATGCACAACGATGAAGGATTTTCCGGTCACCTGGCGTTGGTGG
ACATGGTGGAAGGGAGGTTGTGAAGAGCTCCTTCACGATTGTTGCAGTCAGTTGAGTCAA
ATGCCACCGCAATGCCGCTGCAACATCATCCAGGGATCAATCCAACGTGATCTCGGTGGT
TTCTTCGGATTTCAGCGTGATCGGACAGTCAAAGTGATACAAGCAGCCAAGAACCTGCCC
CCCAGGTGCAACCAGGGCCCTGCCTGCAACATCCCCAGCACTACTGGCTATTACTGGTGA
TGTAGCTTCCAGTTGTGACTAGCTAATAAACTGTCATATATCACTGCATGTGACAAATAA
AAGTGGTCTTGGAATAATGTATGGATAAAATTTCTAAATGTGCGCCACCGAGGTGTCTAT
AGCAAACATTTCAATATGCCTATGTTGATCATGGTAGCAATATTAACATACACCCAGAAT
AATAGTTTGTGTGGTTAATTGTGTATGTTCTTGATGACGGTGTCTGTGCAGGTTTGCCGT
CCTAACAAAATAAGAGAATAAAACGAGCCATCCAATTAGATTACTATGATGTTGCCATGA
GGGTGTCATTATTAGTTTAACAAAGGGCTAGGGGAAATGCAAGGTGGTGGAAATTCTCTA
GGACCGCTAGCAGCAATTTATGAAGAATATTTCTTTTTAGCTAGCAATTTTATTTACATG
TTGTGTTTTTTCACTGCCCTAGGCAGGCCAATGTGGCGGCAGATTTGTTGACTAGGAGGA
GACCTATAGAACCATTGTTCGGAAATTGGAACCCACGGGTTTTCTAGTGGATGTCTTAAC
AAACGATGTATCATATTTTACGCATGAAATATAAATCGTCATGATGTCTTTCCCTAAAAA
ACCCATTGTATTCCCTCACATGTTAACAGGACTGACATGCTTCATGTATCTTTTCCACAA
GCATCATCATCATTAACCCTAGCCAAATGTCGTGGCCACCCTCCTCCCAATCTCGCTCTC
TCATCTCTGCTCCCGGAGGCCGCTGTCTAACAAGGCGGCGCGGCGCCCATGATGGGTGTG
ATGAGAATCTGATCCCTGGCGGTCTCATGGCCATCGACTCGGGATCTTCTCCATGTCTTC
TATAGTTGCAACACGGTGAGTCAGGGATGTAGCCCTGTTCTCTTGCGGCTAGACCGTTGG
GCAGACATTTTTTTTTTTTAGAAAAGGAGGCTTAGCCCCGACCTCTGCATCGAAAGATGC
ATACGGCCATATATTAAAACAAACTCAAGTCTCAACCGAGTACAACTGGTTCAAGAAAAA
CTGGAAAAAAGAAATAAAAAAAGATACAAGACGCCATATGCGTCCAAAACCGGCGATGAC
AATAGATCTAGATGCCTAAACATCTATCCGATTAATATGACGCCATCCAAACCGATTGAA
GATACCCTGAGCTACCATCTCCCAACGGACACGCCCAGTAACCATAAGCTCCCTGGCGTC
CACATGGATGAGTAATGACCACGTACGGATC