Contig Data
morexGenes
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Map Locations of contig_41291 (5964 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_41291

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56965 1 519 bp AK369072 Not available Available None
MLOC_56966 5 3038 bp MLOC_56966.1 Available Available LOC_Os01g55410.1, FRAME:-2, EVALUE:0.0, 13101.m05837 protein expressed protein





CDS Structure of MLOC_56965






CDS Structure of MLOC_56966






Contig Sequence (5964 bp)

>contig_41291 5964 assembly3_WGSMorex_rbca.fasta
GGGCGGCGAGCGCTCGCATCACGTCGCGCGGGGCCTGGGGCGGGGGTTCCGCTGGAAGGC
CCCGGCTCCTGTCGGCGGAGGGTTCCGCCGGAGGGCCCCAGCCCCAGGCGGCGGAGGGCG
CGGCGTCCGCGGGAGGGGGCGGGTCGCACGGCCAGGGCTTGTCGTCGGCTGGCGCGCCGG
GAGGGGAGGTGGCAGCCGGGCGGGGTGGGGCGCCGAGGGGCTCCCACTGCTCGAGAGCTA
GGGCGAGGCTCTCCTGCCGCTTGCGCTCCCGCTTCTGCTCCTTGTGCTTGCGGCGCTCCT
CCCGCTTGAAGGCCGTGGACTTGGCTGCGCGGAGGCTGGGTTGGTGGCTAGGGATTGGGG
CGGGGGGGAGGAGGGAGACGTCGCGGTCGGGCTCGGGCTCCATTGCCCTGGCGGCGGCGG
CGGCCGGGAGCTGCGTCAGCGTGTAGGTGGGTGCGGGATGAATGAACGAACCCGTGGCCG
CGATTTTGATCGTGTCTCGCTTGTTCGAGCAGGTGCCGTGTCAAGTGATGCAGTGGTTAG
GTGGCTGTGGCTCTGCCGGATGAGGGCTCCTTTGATACAAAAGAATTTCATTGAATTTTC
AGAGGGTTTGGATCCTTAGGATTTTTTCCTACGATGGTCGTTTGATTCATAGGATTGAAA
TCTTTTGCAATTTTTTCGTAGGATTCGTTTGTACTACATTTTGGAGGAAAATTTCCATCC
ACTCAAACCTTTTTATAGAACTCCTTTGTTTTTCGTGTGCTATCAAACACACTTCCAAAT
TCTGTAGTGTAGAAAAGGACATGCCACTCTATTCATACATTTTTCCTAATCCTGCATTTT
GAGAATCCTACGAATCAAAGAGGCCCTGAGTGTGTACTGAAAACAGAGGAGTGTCATGCT
GTATCGCGGGAAGGTATTCATAACCGGGATTCCTAATCGTGATTATGAATCGGAACAAAG
TTCTGATGATAAGACCGTAATTTGTCAAATACTATAATCTTAACTACCACAATCGTAGAA
AAATACAGTAGATTTTAGTGACCAAAATCATAGAATCAAGGGGTTAGTTTGGATCATAAA
GTCGTAAAATCTTACTCCCTCCATCCCGAATTATTTGTCCAAGGGGGTTAGCTTGGATCC
CGGGGTGAGATAAACGGTGAAAGTTTTTCACCCATCGACGACTTAGGAAGATTTTAGTGG
GGTATAGATTTGTCCATCTCCTTTCTGAACAAGGAAATCGTCACATAGAGTACATGAACT
TTATAAACATACACACTATGATTAACAAATCAGAGTTTCTTTCTTGAAAACATACATGTC
CATATATCTGCTCTTGACGCGCGTTCAAAACAAGAGTAGCAAAAGCTTTGCATGCTTGAT
ATAGCCCATAAGAAAATATCTTCGTCTCTGCCAACATAACAGCATCAGCAGTGTCCTAGT
TGAACATCGCATAGTTAGTGCAGTAGTTCACTCGTTCAACAATAATCAGTTCAGTGTCAA
CACTTTAGTAAAAGAAACAGAGAGACCTAATGCGCCAAGTCAAAATCATAAAAGAAAGAC
TGGACAAATAAACACTTCGATACAAAGAATGTACCAGGTCAACACAAAACAAGAGGGCCG
ATGTGGATGAGCACTTCAGTAATCACATTTGAATTTCGTTATGAGAATCCTATACCTCAC
TTGAGATTGAGATCATACACCAATCACTTAGGCTGATTTGTTCATCACAGGACAACATCC
TATAGAGCACCTATAAAGCTCACAGTTTCAGTTTCCAAAGTTTCTGCATGTGAGTTGTGC
TACATTTTATAGAGATTGCGGCCACAAAAAAATTGACTTATATATTTTCCATCTCAAAAC
CAATCACCAACAAAAACATGACAAATGCAATCACTAGACATGACATACACTGAATAAAAT
TGACGTGAAAGATGCAAAAATAAAATAAAATGTTATGACATGACAGTGTTATTTACACAA
AACATGTTGTTCCAGCAAGTAATTCCAGTATTACTGGAAACTAACAAGACATGCATCACC
AGAGATGCTATTTACATTGCACAGTGAACGTCTTAGGAACAGAAGGCCGACTTATTTTGG
AATTTTATCCTATGATACAGCTGAAGATCAATTCAACGTTTTGATAGAGTAAACAAAGAT
GTCATTTACACTGCACAGAGAATTTCTTGGGAACAGAAGGCTGGCTTATTTTGGAATTGC
ATCCTATGATACAACTGATGAACATCAACTCAACGTTTTTACAGAGTAAACAGTATTACA
TATTTTATGGACAGTAAGATGAAGCAAACAGAAGCAATCCTGTATACAAATACGTTTTGC
AACAGAGCTAAACCACTACCAACATACCTTGGGCAACATAAAGCAAATAGTATGCAAACA
CGCGTGCACATCAAATTTACCAGCATGCTGGATCGCTGGTAAGCGGTAACCAGCCATCAC
TACATCAGCAAAACAGGGCACCTATATGCCTCTTCTATGGAACCATTGGGCGTTGGCAGT
CGCCGATATAGGACTGATGCCCCACCCCACCCCACCCCCAGAGGAATCATTTCATGCATA
TGTACTCGTTTTAAGGGAAGATGTCATATCTCAGTATCCAAATAATGAGGCCTCTCCACC
ACCTAAATAAGCAAGGCAAATAAAAACAGTCAGTAATGGCTATGGGAAGTAAGATGAATA
GAAACATAGGCAGAATAGAGTGAAGTTATGTATTACATCTGCAAATCGTATTTGGCGTGG
CCTGGGAGGTTTAAGATCATTCTCCTTTGGATGTGTGGAGGCCCAGGGAGTTTGTTTCTT
TGACTGTACTTGGATTCCAAGAAAAGATGGCGCAATCGGTTTATTCTTCACAGATGGCAA
ATTGCGAGAAAGCCAAGAATCTGAAGGTGATTTTGGGACAGGTAACGGCATTAGAAATTG
CAAAGGCATACTTTCCTTCTTGACAGCACTATTATCTTCCGAATGTACTGGAACATCCTG
ACTACTATCATGAGTTTTTCTATCATCCAGTATTACTGACCCTGCGTTTCCGGAAGGTAT
TAATGAAATGGGTTCTGGCACTTTGGCGACCGTTTTTGTAGACCTATCATTGTCTTGAAC
TTCCACTATGCTGTTACTTCTGACTATCTGGTGTCCTCCATGTTGAACATCACACCCTGA
ATTCAAAGATGCCTTTGGATCCAGTGGCAGGGTCAACTGACTAGCTTCTGAATCAATACC
TGCACGGTGATCCATTGAATCTCCGTGCAATGGTCTATCTATCCCAGAGCTCATGGAGCT
TGATCCCTTCAAACTACTGTGATCTGATCCAAGCAATGAACCATGATCCTGGTCTATTCC
AAGTGAGCTAGAGCCATTGCTTCTACTCATTTTCTCATCTTTATCTCTTATTTCAAATGA
CCCATTTGCTTTCTGCGATGGTGACAAGGCAACATCGCGGCGGTAGGGAGACATGCCACC
ACCTATGGAGTGGCGGAATGGTGAAGACCCATCCCCAGTCTGAGAGTCACTCCAGAATGT
CAGATGGTTCGACTCACTTGTCAGCTTGCTCCTCCTATCCTCTCCTTGGTTAATGTACTT
CCGTTCCAGCTTGTGCTTATAAACTTCCTCCCAGTATTGCTGCAGTATAAATAAGACTGA
GATGTTTAGAACTATCACTCATAAAACTATCAAGAAGCGACATAAAACTCTGAATTCGTG
AAGCATTGTTGTGTGCATCAGCTTACCCCATTAGAATCACAACCAAGATTCTTACGTTGT
GAGCTGCGGCCAAGAGGGCTCGGTGCGTCCTGGGCCCTGCCTCTGGATGTCAATCCCCTG
CCTCTGCCTCCTCGGCGTGCCTTGCCACCCTTCATCATAGGCATTGGATTCAGTAGTAAC
AAGGAGGTTTTAACACACAAACCAGGGAGCAAACCACACCCCTTGGATGCAAAACCTCGG
GTACTATGTACGTCGAAGTCATCATCATCTTCTTCTTCCTCCTCCTCCCCATGCTCATCG
CGTCTGGGATAGTTACAGGACAAATAATTGGGAGGCAGATGCTGGTAAGGGAGCTGGACA
GGCGTTCTCCTGACGCGATCGTCATCGCTCCCCATCCTCCAATTGGCCGCAGCGGCATGT
GCATGCTCGCGGGCAGAGTTGCCGGTGGAGCCAGCTACACTGGCCTTGCGGAAGGTGTAC
TGCGGGGAGCCCACGGCCACCGCCTGCGCGGCCGGTAGGAAGCGGTCCATCATGAAGCCG
CGTGCGCCGGGCGCACCGGCGGGGCGGTCCGGCACGCCGCTGAGACCGCTGACACTGCAG
TTCACGGTGAAGGACTCTGTACGGGAGAGCGTGTCCAGCGCGTCCGAGAACCTCTCGTCG
TCATCGCCGACGTCCTCCTCCTCCTTCCGCAGCACATCGGCCACGGACAGCACATCAGGC
GTCGTGGCTTCCTTTGTCGGCTCGACCTCCGGCCTCTCCGCCTTACGCTCCGCGGCACCA
GTTCGGGGCACGGCGGCGGCGGCGTTTGGCAGTGCGCGATCGCGCTCGCCCAGGGCGTCG
TGGTAAGGGGTGGCGCCGTTCTCCTCCGGGCGCGGCTGCAGCGAAGGAGAGGGCGGAGGC
GGGCGGCGTGTGCGGACGCTCTTGGGCTGGCCGGGGCTGTGCTCCCAGACGAAGGGCACG
GCGCCGGGGTGGCGGACGGGGCCGGAGTTGAGGTCGGCCTTGTGGTATGGCAGGCGCGCC
GAGCGCAGCGGCGCGGCCAGGTCGATCCGCTTGCCCGCCTCCGCCATCACGCGATCCCCG
CGCATCCGGCCCGAGGCGTAGGTGGCCGGAAAAGGCTCTCGCTTGCTCGCTCGCTCGCGT
GCTTTGGCCGCCGCGCGCGACACGGCGGGGGAGGGGTGTGGGTGGTGGACCGTGGACGGA
TCTCTGCGCCGTGCCCGTGCCGCGGGGTGTGGCGATGGGAGACTGCGGTTTAGGTGCGGG
CTTACCGGCCACTCCTACTCTACTAGTGCCACCACGGCACGCGTGAAGGCGAGGCAGGCC
CGCCGCCAGCCGCGCGCTCCACTCCACGAGTGCGGAGTGACGGGTCGCGGTGGGGCGGCG
GGGCGGCGTGGTATTTGCTGCTCACTCCACAGTCTAACGGTGCGCGTGCGGCGAGGGATG
GTGACACGGGTGCTCGCGTCAAACGAGCGACGGTGCCGTGGGGACTGGGGAGGAAAAAGT
CCGCGCGATCTGCCTAAAAAGGCGATGCCAGCATCGGCAGCAGTGCTCGATGCCTACTCT
CTTCGCCAAACATATCCATGGCTGCCCTGCCCTGCCCTGTCCTGTTTGTTTATGTAAATT
CTCCTACCGTGCTTGGTGTTCAGACGTGAGCAGGGTCTGCGTTCGCACGCCGGGATCGGA
GGCCAAGTTATTAAGCAGGCAGGCACGGGTCGCCACTGCGAATGGGGTTAAAATAATTGT
CGGGTTTGTATTGTTTACTCTGTTGGAGCAGCGCTGGTCGCCTGATAATTTGCCGTTTTT
TCACTGTTTGTAAACTTTTTATACGTGCTGTAGTACATTTTCACTGTGAGTTTTCATTTC
TATCCTACGTTTTTGTTCCGGCAAAACAATGCAGCCTTCGGGGTCCAAGAATTCATTCGA
CAACTTTTATAGTGATGGGCTAGGCTCGTAAAATTATGACATCAATGAGCATTGGAGTCT
GAAAAACTCTACTGTATTCCGTATTCCATGTTGCTGTGGTGCTGGCGCCACACGGGGCCT
GGAGCACCGGCGCATCAGGACAACTCCAACCTTAGAGTATCTCTAGTAGCATCGTTAAAC
CTTTAAATCCTTAAAACAGTTTAAGGGTTGAAAATTGGTATTTTTTGACACTTTTAAGGG
TTGAAAAACAGGAGCAAAGACTAGAACCCTCAGACCCAACCCTTATAACAAAATATTTCT
GCGGGTCGGCGAGGAGAGCTCGGG