morexGenes - Barley RNA-seq Database

Contig contig_41273
Source Contig contig_41273
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41273 (9797 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_41273

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56949	1	653 bp	AK248203.1	Available	Available	None
MLOC_56950	9	2265 bp	MLOC_56950.3	Not available	Available	LOC_Os01g49380.1, FRAME:-3, EVALUE:0.0, 13101.m05134 protein lipase, putative, expressed
MLOC_56948	1	325 bp	MLOC_56948.1	Not available	Available	None
CDS Structure of MLOC_56949

CDS Structure of MLOC_56950

CDS Structure of MLOC_56948

Contig Sequence (9797 bp)

>contig_41273 9797 assembly3_WGSMorex_rbca.fasta
GTTGGTATTGATTCTGTCAGTAGCTATTGCTAGTGTTAAAAGAGTATTCTCTTCAATGAG
CCATGTGAAGAATAAGCTAAGGAACAAAATGGGTGATGAATATTTGAACAATTGTTTGGT
TACATTTGTTGAGCGAGATTTTTTTATTCAAGTGAAGGATGAAGATGTCATGAATCTCTT
TCAAAAAGGCGACCGCACAGTTATATCGTAAGAAGGATATCATCACTTTATCAATCAAAA
GTACTTATGTATTCATGTCTTTATGGTGTGATTTATTGAAATATTGCTATTGCCGTTATG
CTAGTGTTGTTTTGTTCATATATTGCTAGTGTTGTGTTGTTTGGTTCATATACTACATTT
AAAGAAAAGAAAATTGGATGAATACCCAGCATTCAGAAAGGGCACATCACAAAAGGCTTC
TCAGTATCTGCCATCATATGTCAGAAAGGGCACATATACAGAATTTTTTTAAAATTCAAC
TGAAACACTGGTGAGGACTGAGGAGTCTTAAAACGTCGGTGTACCCATGTCAAATCCATC
GAGATGTTAAAACGAGCAGTTCTTCCAGCATGGTAGTTTATTTCATTTTACGAAGTAGTG
ATAGAACACATAATTTTAAAGCTCACTCACGAAACAGCACGTCCATTACCATTTATGTCT
AATAATTAGGAGAAAAGCAAAAGGTTAGCATATATTACCAGCAGATCTTCGTATTTCTTA
TTGAATTCTGCTTCGGTATTAGATGAATCCCAATCAAGATTGTACTCATGAGCAATAGCT
TTCAAAACCTTCAACTTTGATTCCGCTGATGGAGCCTTAACTGAAAGCTTCTCAATTATC
TGCATACACAATGCTCAAATTGTGAAATTGCACAAGACGCTAGATTCGCACGCAACACAA
CGTCAATTTCTGAAGGAAAACATATATTGGAGATCTTCTTACAGTGCGATTAACACCACA
ATCAGGGCGCAATTCCATAGCAGCAGCAACAAACTCTTTCCCATACTTGGTGGTAAACAA
ATTACGGAGATGCATCAGCTCAGGCAAGTCTGAGCATCTTCCTGATGCAAAGATTATACT
AGCTATTGCCTCTCGCAATTCTAAGGGGCATTCCCTGTTCCATCATAAAATCAGTAGCTG
TTAATCATATTCTAGTAAGTGAGAGAAACAAAGAATCGTGATATCTACATAGTAACATGT
ATATTAGTAAGATCAGATTTGATAAATCATGACCTACTTTTGGGCCTCAACAATAGGGAC
TCGTGCCAGAACAAATTCGCAGAAAAGCTCAACAATCTCATAGGCAGCCAATATATTTTG
CTCCCGAATAATATGCTCCACCTATTATTAATAATAGCATGTTAGAGAACTGCATCAAGG
AGAAGACTGGAACCATGGGAAACATATATAGCTGTAAATCTAATTTACCCGAATCCTCGC
AATAGACTCCTGGCCCGTCTGAAGATATTGAACCATCTCTTTGCGCATATTTATCAGTTG
CATCTCCCTCCTATTGCGCAGCAGCTTGATCCTCGAAATGATCAAATTCAGGCATGTTTT
GCTACACAAAGTAGGGAACTTCTGTTAATTACAAGTATAAACAAAGCAAGAACCGTAAAC
TGAAAGTAAAATTGCAAGTACAATATGAAACATGAAATGATTAGGATAAGAACTGACTAG
TAGGTGATAGTCGATTGCTTCTTTCATTAGCACTCCAATATCGTAACCGTAAATTGTTAT
GCAAAGCCACCGGGTATGATCCAGTTGGGATAACACAACCATTTATTCAGTTTTATTAGG
TCAATCCAATTCTGGTGACTCTTACACAGGTCATGAATAAAACGAAACAGGCATACGATT
TTCCAATCCGATATTAAGCCTGATATGGATCATGTTACCACTTCAAAATTTTCCTACGAA
GCTATAATATACCCCATCCAGCAACAGTAATTCGCCGCCCAAGGATCCAGATGCCTGCTA
CTTTTTCCCCATCGCCACACATACCATCCGCCGAACGTCTTCCTGAGCGGAATTCTAAAT
CTACAACTCCTAATAATCACGCGAGAAACCCGCCGACCCTAGATCGCTGATGAGAACCGA
GAAGAGGAACTGTAGCCAAAGCGGGGCAGTGATGGGATCTGAGAGGGAAGCGAACCATTT
GGTGCCGAAGGGGGAGGAGCGGTTGAAGAGCGAGTTGAGGGACGACATCGTCAGTGGCGG
CCGCTGATCCACCTGACCCGGCGAAGACGAAGACGGAGGGGAAAGAAGCTGTTCCGTGTG
TATTTGCAGGTGTGTCCCTTTACTTGATTATTTTTATACTACTTTACACCATACGGCAGA
ACCTTTTTTTTTCTCTACCTCTACTAACTACTCGCTCCGTACCTAAATATGAGTCTTTTT
ACAGATTCCAATAGTAGACTAACGGATGTATATATAGATATATTTTAGAATATAGATTCA
TTCATTTTGCTTCGTATATAGACCACTGGTCAAATATTTAGAAACGGAGGGAGTACTATT
CCCTTCATCCTATAGAATAAGTGATGCAAATTTAATACTTCCTCCATCACAAAATAAATG
GCTCAAATTTATAAAAAAATATTAAATTAGTGTAAATTTTATACTTCCTTTCACAGTTTA
GAAGGCATGCACATGTATCTATATCGCTAATATGACTTATATAAAATATATTGTTTAATA
TAAAAATTATATCATTAAAAAATAGATCATCTAAAGTTTCCAATGATATATTTTTTTGTT
ATATATAACTTTTATTAAGTTGGTCAAATTGACGACCTAGATACATATGTCGGACTTGTA
AATTGAAACGGAGGGAGTACTAGATCAACAAAATTTATTTTGAGATAGAGAGAGTATTAA
AGAGGATTTGTTTATCGTGCGGTAAGTATGATAAGCCATTCCAACCTATAGAAAAAAGGT
CTATTTGATAAAAGAAAAGGATCTGCTTAAAGTTGAAACCGTTTCAGCTGTTTTTTTAGA
TGAAAACAAAGCTGATTTTTTCGCTTTGTTTTTTTCCTAATATTTCTCTTTTCAACCGAA
ACCAAGAGGGAAAAAACAACGCCCTAGCCTCTTTTTTTAGGGTCACGATAACGCCCACAT
TTATGGTAGGAAAAACAACAGCTCACACACTCAATTATTATAGGTTGCGTCACGTCACCG
TATGTATACACAAATGATAAAAGTGGTGATGTCAATAGGAATCTTTTGTCTTTTTATTTT
TAAAAATGGTTTATCTCTTAAATAAAAATTTAGGTTGGAAAACCGTTAAATCCATCACGA
CGAGATCTTCGAAACTAGATCTCATATTGATATGTTTTGACGATTTCTTTTTGAAGGTTA
AAATTTATCATGTCTATTACACGTAAATTGTCATCATGATTACATTGAAGTTGTCATGAT
ATTTTCTAACTACTTTTTATTCTACGTTTAAAATAAACTTTGACATCTTATAGAAAAGGA
AAATAACAAACTAAACTTGCCATGATGAATTACTAAAATTTATCATGATCCATGAAATAA
TTTTGACATGGTTCATAAGTAAAAAAAATATGTCATCGGTTATTTTAAAAATGCATGGTC
ACTGGCTCAAATTTGCCATGAACTATAAACTAAAACTGCCATGGTGAATTACTTAAATTT
GCCATGATACATGCACTAAAATTTGTCATGGTTCATACAAAAAATGTTTTTCTCTTTCAA
AATACTAGAATTGCCATGATCTATAAAGTCAATTTGCCATGATGAATTACAAAAAGCTGC
CATGATCCATGAATTGAATTTGTCGTGGTTATTGCCATGGCCAATTAATAAAAATTACCA
TGAAAAGTAGTTGAAATAAAATGGTAGCTTTAAATCTAGAAGAAAACTAGATGAAACATG
TCATGTCAACTTTATTGTAAACCCTGGCAACTTCAGTGTAAACACGTGGTAAATTGTAGT
CCCCAAAAAAAGTCGTCAAAACATATCAATAAGGGATTTTGTTTTAAAAATCTTGTCAGG
ACGAACTTAATGATGAAAACGGATTTTTAATTGGATTTTTTAAAAGATAAAACATTTTTA
AGTCTAAAAACCAAAAAGATTCCGCTGATGTCATATGTTTGATGTGGCAAGATAAATGGT
TATAGAGACGTATGCACCATGTTGTCTCGTGCCACACGTGTGGACGTTATCATTTAGGTT
TTTTTAACACCCCTCCCCTCCCCATCCCCTCTCTCGTTTGGCTAGGGTATCACACCCTGA
GTTCTCCTCCCGGTCGCTGTCAATTCTTCCTGACCCCACAACAGTGTCCTCTCAAATGAG
CTATAAGTCTTCATGAGTTTTATTTATACTAGTGGGGAATTTCACGACTTGTATACTCTA
AGTACGAGCCTCCTTCCTTTTATTCGGTGCTTTCCTTTTGTAGGTCACTGCTATTCTTCC
TTCACCCTTCTTACCTTTGCTAGATTTTGCATTCCCCTCATTACTATTCGGCTCAGTATT
ACCTTCACCTACGGTAGATGTCAGAATTTCGTATATAGCAAATTCAGGTAGTAAGTAATG
GAACTGTAGCATGCAAAGGGACTGTACCATGGAAATTGAGAAGAAATCTCGATCAAGATT
TTCCATTTTATGCCATATGAATAAGAGATTCATTTTAGTCAGAAAGTTGACGTAGAAGTT
TGCTATCAAAGACCTAAGACAAGTAATATGGATTGGAGGGAGTAACAACTAAAACATCAA
AGATCAAGAAGACAACAAATACATAGCCCCTGCTAACGGCATCAAATAGCCAACTGCTAA
CAAATTAATGAAAATGTGAAACCGGACTTCCGGAAAATGGGGTAGAAAATCTCTCTACAA
CACGTTCCTGAAACTAAGCAGCATAGAATTTCATGCTCACTAATTAAGTGAAGGCCTCAT
TTGCAAAAAGAAAAAAGAAAAAAAAGTGAAGTCCTCAGACACCGAGTATTATTATTTGAT
TCATCCAATATTAAGTGGAACAGAATGGTCCAGATCAACGAGACCATGCACAATGGTATT
CAACAGTGTGAATCCAGCCAGGAAATGATGTCCTTGATGGCGGTTGAAATCCGGTCGTCA
GGCTCTCCCTCGAGGATAGAGTGGTAGGCACCTTCATAGAGTTTCAGGGTCTTGTCTTTC
GTGCTGGCCTTCTCGTACAGAAATTGACTCACATGAGGGTCGGTTACCAGGTCTGCTGCT
CCATGAAGAATCAGCAATGGGGAACAAATCTGTGATAACATGTATGAAGTGTTTACATTT
TAGGTACTTCTAGAATAAGAAGAGATGACAATGGTTACTTCTTGATTCAGGTGATGCTCA
AATAACATTTTTAGATCACTACTTTAGTGATCTAAAAAGTCTTTTACAGAGGGAGTACAA
GAGAAAAAGGTGCAGATGATACTGACTTTTTCCAATTGGGATTCAATGTCCTTTGTAGCC
TTCAAAAGTTCAACTGCTGTCCTCAACCTCATCTGGTCATTATATGATATCGCGTTGTAC
TCACACTGAGAAGTGAAAACAGAGATGATCATGATCTATAGCATTTCAGTATTTCAACCA
GCCATGTTGTACGATTCCTTTTTAAAGAGGTGTGCTGATTGTTGCAATAGAATATTTGAT
TACTACAAAAATGTGCACTAGAGGGGCAAATGTAGAAATACGAAGTACCTTGCCACAAAT
GAACCAACGAATGTGGAATATTATTAAGTATACAAACAAATAAGACAGGTGCCACTACTT
GGATAATGTGCTACATGCTAGATATTGCATTGCATTGAAACAAACCAAGTTGAATAAAAT
AAAAGGACATGGTCAAGATACTTACTAATTTTCTCTTCACTGGATCCCTGAATCCCAAAT
CTCCTATGTCTTTTTGCGGAAATAACTTCGCTTCTGGAAGAAGGCATGATAATATGCTCA
ATGCCTTCAACACTGGCGCTGGTGGTGTGACATCTTCTGAAATCTTGCCAAATAGAAGTC
AGAGCCTTGTAATAAAGATGGTGAAATGACCCATGCCATTAGATAAAATACATGTAACAA
TAGTATAAACGAGGTCCTCCATAGCACTTTTTTGTTGACAAATACACGATCTTATATTAG
TTTACAGAGGGAGTATCACTTTATTTTGAAATTTTGTTGCTGCATGGTCATAAATGATTG
TTATAACACGGAGTAAAGATGGATATCTGCAGATTGTCACTGTATATTCAAGTAAATTTT
AAATTTACTTGACTAAGTTAAGTATCATCAAGTGCTGACTCAACGCAACATTTCATGATA
TAGTTGATGAGAAGCCAAGCTTTAACCAGAGATTCCTTCAATTACAGTGCAACATATCTC
GAGACTGTTAAATGCAAAAAAAAAGTACAGTTACAAAAGCATAAGTCCATCAGAAAGGTT
GTACACACTAAACAGTGGCTTAGCTCCAAACATGAGAATGTAATGCAATGCTAGATCTGA
TGAGTTCCATTTAGAGTTTTATAATGCAGCTTATCTCCAAACAAGAGAATGTAATGGGAT
GCTAGATTTGATGAGTTTCATCGAGAGTTCTTTACTTACCTTGCACATAGGTGCAACAAG
AAGCACTCCATCCCATTCTTTTGGTTGCTTTAAGTGTACTTTCAGAGCCACCGCACCTCC
CATTGACTGCCCCAAGAGAAAGTATGGGAGCCCTTGCACGTCTTTCCTTCCTGAACATTC
GAAATCATTGCATTATGTTGCAAATATTATATTATTCCACAGAAGATATATTCCTCATTT
ACAGGAGATATGCATCAGAAACCTCTTATTCTCGCATATTGTTCAATGACATGGTCCACC
ATTCCATCAAAGCTTGCGATGTAGCCATGAAGACCATACGATAATCCAAAACCAGGATAA
TCCATAGCATATACTGCATATCCAGCAGCGGCTATTCTCTTAGCGACCCCTGATATTTTC
AAGCTAGTAAGATATAGATAAGAAAAAGGTGAAGCAAAGAGAACTCAACAGGGAACATAA
CAGAAGAGTAATCACCTTCAAAAAAGAAAGTGCAGGTATCTCCATACCCATGGCAGAAGA
AAAGCGCTGCCTTGGTGGGAGTGCCCTCCCTAGGCAGCCAACTCTTCCAGAATATTTCAA
CTCCCTTTGAGTTGGTCTCAAAATTCTACAGAAACAGGCACTACCACTTGTCACACAAAG
GAAAAGAAGCTATAAAACAGTTCATCAAGATTCAAAGTGCCTGCTAATGTTAGTTTCTTT
TTTAGGCTAGCTGCAAGTAACACAATCATGCCGCTCCTTGTAGTTACTTAGTTTCCTCAA
TACTCCCTGGGCATGTACCTGATATTACTAGCTTAAGATATCCGTCTTTTGATAGATGCC
ATCATACCAGCTTTACAATAGGAGAAGATGCTTGTCACTTGTGTCACAGTCTCACAGATA
CACTTGTGCAACAGATATATTGCATTGCCACCAGGGAACTACTTGAACCAAATATAAGCA
GCTTGAATACAAGGGAAGGTCAATTCAGAATCTCCATCATGTGCTTACCTCTTCCATCTG
GATTCCCTTGGGCGCCATCTACAGAATGAGAAGTAGGAGACAAAAGGTGAGAAAGAAAAG
ACCAATCGACATCGCATTTGAATATTCAGAGATCATATCAACAATACCGACGAAATATGT
TGCAACCCTCAGATAACATACGCTACAGAACCTATCACCTTTGGAACAAGATCGTGGCTC
AAGCAACTACATACAATGTGCATTCAAGTGTAGTTCTGCCCATTTGCATATTGCATTAAG
GCGTAGGACTGCCCTAACCTAGACACGAGTAGTACAACTATACAAATAACACGCACACTC
AGAAATCATGAGTAATTTCAGATCAGAAATGGTACTGCATGTGATGTGAGTTCTAGTCTC
GACTACTCGGCGAGTTGAAATATGTTTGACTACTTTTGACCATTCGGACCCTTTACTGAA
GCAAGCACATGACGAGCTAGTGAAAGGATCAAACACAGCCGCCCCAGGAGAGGGGACAGG
GAGCAGAGACGAGACCTTGAACAGGCAGTGGTCGAGCGTGGGGAGCACGGGCGCGAAGGC
CGCGCGCACGCGCCGGCGCGCCGGCGCCCAGTCGAGGCTCTGCGCCGCCGCGGCCCTCAG
CTCCTCGCTGGCGCCCTCCAGCCTCGGCAACGGCGCCTTCCCTGCGGCGACCGCGACCGA
CGCGCGCCTCACAGTCCCCGCCCGCGGCGCCCCGGCATGGCGCGGCCCCGCGATGCGCTG
CAACTGCGAGATCGCCGCCATGTGATGGATGCTTGCTCGAACAGCGCGGTGGGCGGTAGG
ACACTTGAGTACCTACAGTCTCTGAGAGGACAAAGGAGAGGGACAGGGGGGTGGTGGGCA
GGTTGGTGGCGTCGTCTCCTTGTCGAGAGTCAAGACTGCCGGCTTGGAGCTGGAAGAGGG
CTTCCCTTTGTCTGACGGTTTGACCACCCCGCCGTGCTCACGACGGCGAGTCAGAGTCTG
TGTGTGTATACGTGTGATTGAACGGGCTTTGACCTGGAACGGACGTGTCCACGGTGCATC
TTCAATGCCGGGCTGCTCGGTCACTTTGCAGTAATGGGCTGACAGCCTCACGGTATATCT
CCTTTGATGCTACTCTCTCTATACCTATATCTAAGAGCATCTCCATCCGAAATTTCCTCT
ACGCCGCTCATTGCGGCGGCAAGTAGTTGCCGCTTCGCACATGAGGTGCAAGTGTCTCCC
TCTTTCCCTTGTTCTTGCTCTGGTTTGAAGGAAAATTTTGTATTTCCGTTATGCTTTATA
ATGAAAAGGAAGAAAGCCCGATTCAGGAAAAAAAATGAGGTGCGAGCGAGCGACTGAGTT
TGGACCGGTCTGTTAACACTTTCATCAAATCCCGGTTTTGAGAACCTTCTACTAGTTTTC
AGCCGGTTTATTTCGGTTTTGGGAACTTTTTAGAAGATTCCCCGAATCGGTTTTTTTCTT
CTTTCCTTATATATTTTTTTCTGTTTGTGTTTGGAAACGTTCTGGACTTTTAGAAAATAT
TCTAGAATTTTTCAAAATTTGAAAAATATTCTAGAATTTGAAAAAAATGTTCCGGAGTTT
GAAAAATATTTCAGAATTTTAAAAAATATACAGGAATTTTTTAAAATGTTCCGGAATTTG
AAAATATTTTGGAATTTAAACAATGTTTCGGAATTTGAAAAAATGTTCCGGAATTTGAAA
AATGTTTCTGAATTTGAAAAAATGTCCCGAATATTTAGAAAATGTTCCAAAATTTGAAAA
AATGTTCTAGAATTTGAAAAAATATTCCAAAATTTTAAAAAATGACATAGAATTTGAAAA
AATGTTCCTAATTTTGAAAAAAATTCCAGAAACTGAATTTTAATTTTCGAAAATTGAAAA
AATGTTCCGAATTTTTTTTAATTTTCTATTTCTTTTTCAAAAAATGTTTTGGATTTTTCA
AAAAATGCTCTGGATTTTCAAAAAATGTTCTTCAAATTTGGAAAATGTTTTTGGTTTTTT
AGTAAATGATCTAGATTTTCAAACAAATTTTCAAGAAAATGTTTTTTTAGAGGGGGGGTG
AATAGGCGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAAAACTAACGT
TTAATTTCTCAAGCACAAAACCTAAAATAACTAGGCTCACCTATGTACACCAACAACTTA
TGCTAAGCANNNNNNNNNNNNNNNNNNNNNCAAGATATATGACAATAAACGATATGGCTA
TCACATAGTAAAGTGCA