Map Locations of contig_41256 (9783 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41256

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56931 1 839 bp MLOC_56931.1 Available Available None
MLOC_56932 1 585 bp MLOC_56932.1 Available Available None
MLOC_56933 3 1125 bp MLOC_56933.3 Available Available LOC_Os01g16650.1, FRAME:-2, EVALUE:2e-87, 13101.m01863 protein ubiquitin-conjugating enzyme, putative, expressed





CDS Structure of MLOC_56931






CDS Structure of MLOC_56932






CDS Structure of MLOC_56933






Contig Sequence (9783 bp)

>contig_41256 9783 assembly3_WGSMorex_rbca.fasta
CATGTTGATCCAATTGTTCCTATTGCTTACATTGAGAAACCTCCTTTTCCCATTAGGATT
AGGGAACATGCTAAGACTACAACTGTGGTTAATAAGAGTCATGTTAGGATACCTAAACCT
CCTTTTCCCATTAGGACCGGCAGCTTGCGGAGACGCGAATGCTTTTAGTTGATAGGGAGC
GCGAGCTTACGAAGACCCAGACACTTCTAGTCCCTGTGTTCCTAAATATAAGTCTTTTTA
GAGATTCCAATAGGGACTACATTCAAAGCAAAATGAGTGAATCTACAGTCTAAAATATCT
CTATATACATCCGTATGTAGGCCGTATTGAAATCTCTAGAAAGACTTCTATTTAGAAACG
GAGGGAGTAGTTGACAGGGAGCAGCAGCTTGAGGCCGGGCCACTTCTAGCTGACAGTGAG
TTTCCTTGTCTAATTTTGAGTTATTCTCCCTTTACCATCTGGTCCAAGTTAATGCTTGGA
ATTTTAGAGAATGTACATTGGTGGGTTGCTAGCATAAATTATGCATGCATTGGGACTAAT
ACACATTTTCTTGAAATGGAGAGCAGTAATGTCGCCTTAGAGCAACTTATCTTTGTTATA
ATCTGTATTTCAGGCAACTCACATATCTAAGTATTTGAATGGTGTAAGCAACTACTTTCC
AGGCTGTGACCTTTCTATAGATCAGGCTTAATTATTTGAGTAGATTTTTTTTAATCTTAA
TTTGTTGGTTACCACATTTCTTCAATGTTTAATTTATTGTAGAAAGGGAACACAACAGCA
CTAATTGTCTGAGTTGACCCCCCTTTATACGATATATTTATGCTCGAAGTAGAGGGTTGG
AAGATTAGCAACAAGCAAGACATATCACATGATATTAGTCAAAAAATTGAACAGTTATTG
TGATACTTCTCACTATTTTAGTAATATATTCTAATTGGCATATTGTTGTATCAAATTGCA
ACATCATGTAAAAATGTAGCACTCTGAGAACAAATAGTTGTGGTCACGCTCTATTGCAAA
AGTACACCTTGTGCAGCCAAAAAAATCATAGATGAGCAACATGCAAAAGCATGACCAGTT
GCGAACTGTTCGCTTGTGTAAACAAAATGTTGTGCGCATGTAGTTGCTACATTGGTCCTT
TATCTCTGTGTTTTTTTACAGTACACGGCATTTTCATAATTTTGAACAACTTTTAGCAAG
TGCATATGTTATAGCATTTTACAACCATGATTTCCCCTGCCCCACATATATTGGAAATTC
AGGGTGCATGTTCTACAAGTGAGGTGCGGATGCAGCGGGTTGTGGAAAATTCACATTCGA
TGTTTGTCAACGGCCAACTGTGCTGGGTTGTGATACTGATCGCTCTTTACTGGTTTGAAT
CAGTTACTTAATTTTGCAGTTATGTCTCTGAAAATATAGGATTTGATGAAATGGTTAGTG
TTATATGCAAGTGAAAATTTCTCAACAAACCTACTTGCATCAAGTTATTTGCTACTTCTA
TAATGTAGTGTTTGTAGAGCTGACAGTTTTGCATTTATCTGCATGTCTCTACAGCGGTCC
AAAATTTGTTTCACATTCTGTTTAGAACTAATGATCATTAAGTGCTTGCTATCAAGTTTG
TATGAAGCGTCTCAAACCCACATATATGGGAGCCCGCGTATTTAGATATTGATCTTGCTT
GAGGTACAAGTATGGCCTCGGTTGTTATAGAGATTAACCGAGGGAGAGAGATTTACAAAG
AGGGAGATAGAGATAAGAAACAATAGTTAAGCAGAATAACTATCTCCTAACAACTCCTTG
ATACTCACGAGATAAGTCTAGGCCGAACCTAGCCGTGCCCATACTTCATGTTTAACACTT
GCCACCATTTTTACACTTTCCAGTGCCTTATTACTACTCTCTCATTCAATGTAATTGAAG
TTTAGGTTTGTCGTAAGTCAAACTTCTTTAACTTTGACCAACTCTATAGAAAAATGTATT
AGGATCTACACCAAATACACACAATACGAAAATATATTTTATGAAGAATCTCATGAGACT
ATCAGTGTTCTAGATGTTAATATACTTTCTATAAACGTGGTCAAACTTAAACAAGTTTGA
CTTAGGACAAACGTAGAACTTCAATATTTTGGAATGGAAGTATCTTGTAAACATACAACG
GTCACGGTTATGTAATTCATGGTTATTTTATACCTTGTCAATAATCAGGTTCAGGCATAC
CAGAGTAATAAAATCCAACTTGTTTATAAAAAAAAAGTAGACACATTATGATGCACATCA
GTCCTATGTAAATTCACCTATACCTTTTAGATTGCCAACAAATCTATCTCCATTCTTTTT
GGTGATAACGACGTTGATTTAGCTGCAGTTTTATTTACTGTGTTCTGCTTTTCTTATGCA
GCAAAGGAGTTTGAAACTGAAATTTTGAGGCTTAAGTGTCTCTTGGCTGAGAAGAATGAT
ACAAATAACTATGCAGCTCTAGTGTCTCCTAAGACAATAACTGAAGTCATACAGAAGCAA
ACTCCAGTTTCACCTGCAAGAACACCCGTGTCGAACAGAACTATACAGTCCAGTCCAGTG
CGAATGTCATTGTCCACCATGGCAGCTTTCAGGATGAGGCTAGAGAGGCAACTTGTTGAA
ACAGTCCAACTACTTTGCTGGTAGTGTAGAGGTATGCAAGGGTAAATGATTAATTTGAGC
TTTATATTGTTTATTAAGCCTTTTTTATGGCTTGCATTGTTCTGTAGCAGGACTGCTGTA
GAAGAGGTGTTCGCACCTCAGGTTAGTGATAATGTACACATGGATTGCAGTTTGTATTGC
TTCTCATGCCTGTAAATTGATTTGACTTGCTTTCAGGGAACGGGACATATGAAAGTTCTT
GTTCTTGTGTGTATCATATGGTGGTTGAATCTTTAGTTGGCATGAAATTTTCACTTAAGG
ATGAAGGAGAAGGATACACATTCAGTGTCAGCTTGCCTTCTAGCAAGAATTGTGCTCTTT
CCTTTTTGTATCATAGTTCCTCTTTGATCTGGCCTTGCATTTTAAACAGTTTATACTTGC
GTGGACTTTATTAAATGTAGGGCAATGCGAGCAATATTGTCATGGTGACAGACAATGGCA
ACGTTAGAGGCTGGACTTATTCTGACCTTTAGTTGTTGTTATCAGCACATGTTGTAATTA
TTCCTTCTCTAGAAAACATGTCGTAATTATGGCTGTGAAATTTTGATGATCACGGGGTAA
ATCTATATAATATTCTTACACTTGTTCACATGTTGAGGCTATGTTCCTGCCAATTAGTGA
TAAATATAGTAGTATGTTGGAGTGACCTGTTACCTCATATCTGTTGCATGTGACCTCTCT
TTCTATCACCGACATGTGCTTATATTCTGGCGTTAAAGATGTTGATCCGACATGTGCCTT
TGCTTGTCAACAGGGAAGTGCCTGCCATATGATTTTGCATCAGTTGAATATTTCATTTTG
CACTGTTTATCATACCAATATAATTGTTTGTCAAAGGTGCTAATGCAAATCTTAACTGAG
ATCTTGAAAATATTGTAGGTTATAATTTCACCCTTACATGGTTAGCGCAACCTGATGGTG
GTGAATGGGGAGCCTACAAGTACTCTTCGCTAGGCACCCTGGAGAAAATCGATTTAAAGT
GGATGAGAGTGCAGGACATAAGGTTTGGCAATGTGCCCTGTATTCTTTGAGTGGATATCG
AGTCTCATCAGGCGAGGCCAATGATAGTGGTGACTTCATAGTTTGGAGCTCTAGATGTAA
CATGACTGAAATTGATCGACTGTTGGCAGACCTGTCCTTAATGTGTGTGTACGCTGGGTA
GATTGGATGATTTGCCCCAAGTTTCCGACCGCTTGGAGGTCCTCGTTTTTATTGTATATT
TTTTGCCTGCAGTTTGATGATTTTCCCTTTTGGTTTACTCGATTTTCCATTTGCGTTTCT
AGAGGTATGTCCAGTTTCGAACATGGCAGACAAAAAATAAAACTCGAATCAGCTACATGT
CACAAGTATCCAACAGTAAAAAATCTATCGAGCAACTGATTATTTCAGTAAAGTTATGTC
CATCTCAGCGATGGGAGAAGAGAACAGCATGACATAACAGGTTGCTAAACCTACCGAGCA
ATCGAAGCTCCAATCAATTACATGTCCAAGTATCCAACCAACAGCCAAGAATCTATCCAA
CACCAGATCCGATCAAGCGACGCCCATGTGTAGCCGCCAATCCGATAGATCCCGCCTTCT
TGTTCCTCTTTACGCCGGCTTGTAGAGCTTCTCCACCATCTTCCTGAACTCTGCGCACAC
CAGAAGGAGAACGGACCATGCATATTCAGAACCAAGAACGGGTTTGATGACGTTCAGAGG
ACGAGGGGCGTTTACCTTCTTGATTCGCCCAGAGCGCAGCCGCCTGTGTGTTGAGTGGGG
AGTCGTTGTTCGGCTCTGCGTCCCAAGAATGAGTCACAAGATCAGATCAGATCAGACCAG
ACCAGATCAACCACACAAGACAACAAGTAATAGATACAGATCTGACGGGACGAGAGAGAT
GAAGGAGTAAGAAGCGTACCTCCGAGCAGGCTCTGTATGGAGAGGAGGATGGTGCGGACG
TCGTAGGCGGAGGACCACTTGTCCTGGAGGATGTCGAGGCAGATGTTGCCGTGGTTGTCG
ACGTTGGGGTGGAAGCAGGGGGTCTCGAACCGCACCTTGGGCGGCTTGTAGGGGTAGTCG
CTGGGGAAGGCGAGCGCGAGGCGGTAGGAGGTGCCCTCGTACGCGGTGGCGGCGGATCCG
TCGATGGTGCCGACCCACTGGAAGATGTTGTCCCCCTCCGGGAACGCCGACACCCCGGGG
TCGCCGCCCATCATCAGCGCCATGAGCTCCGACTGCAGCCGCCGCACCACCGACTGCCCG
TCCGCGCCACGCGCAGCCGCCGGCGCCTGCTTCCCCGAGGACGCGGACGCTGCCCCTGCC
GCGGGGGCCGCCGGGACGTTGCCGCTGCCGTGCGACTCGCTGTTCTCGCCCCTCGCCATC
GCTCGTTCCGCGCGGGGGGTGGATCGAGGAGAGGAGCGGGGCAGGGCGGATCGGATCGGA
TCGGATCGGCGGGAGGGTGGAGAGGGTTTGGAGGGGAGAATTGGGGAATTGAGACGGCGA
GAGAGGGCCGGTGATTTAAAGGAGGGATCGGTGATTCGAGCCTAGTGACCGTTGGGATTG
GGTCTCGGGGCTATCGCTAGCTGTTCGATTGGATTGATTCAGCCGTTGCAATTAATCGCC
AGAGCGTTGCGGTGCGGACGCTGGCAACCAGGCCGCTGATTCCAACGGCTAGTTTGTGGC
GGTTTTTTCCTCTCCACGCCCTTGTCCTTTCGTTTTTTTCTTTTTAATCTCAACCGATGC
CACGCAAAATAAAATCCAACAAAAATATTAAAATATTCTAAATCAAATCAGTATCTTTCC
TAAAACTATGTCATGCATTAACTCAATCAAATCTTTAAAAAATCTCAACCAAATCAAAAC
TTTTTTTATCTTTCCCCTACTCGTATCCAAATCAAATCAAATCTTATCAAAACCTCAACT
AAATCAATATTTTTTGTCTTTTTTCACCAATATGCAAAGATTGCGTATCATTTCATTGAT
GGAAGGAATTTAAAAAGATACACAGTGATGGTACAACATGCAACACGTGCGCAAGTAGAC
ATAACACTGTGACCAAAGCAGGATGGAGGACAATGCTGAGCCCAAGGACCGATCGCCAAG
CCGAATGTAAGATGATGATCATTCCTTTGCCACCAACTTTTGTCCATAGCCGTACTTGAT
CCTTGATCTCCTAAAGAACACGTGATGTGGAGAGTCATAAATCATTAAAGATGCACGCAT
TGCGGTGGCACCTGATCGACCACGCCGTCAGCTTGATGAGGGAGGAGAGGTCCCGTCAAT
GGATGGTGGGGGGCATGCTCGCAAGTAGAAGCCCACCACTCCTAGAAGCTCACTATTTGG
TCGATGAGCGATGATGTGGATCAGCATCAAGACAACACCTCATACCAAACCATTTGCAAG
AAGGAGCAGCTGGCAAGAAGGTGTTGCGGGTCTTCGGGAACCTGGTCGTAGAGGACACAC
CAATCATCGTGTGGAAGGTCGCCTCGAGCAAGACTGTCCATAGTCCAACATCTATCCTCA
AAGTAGTCCAACATCTATCCTCAGAGCAAGCCTCGTGAACACCTTAATTAATGTGAAGGT
GTGTCGGTTCAGAAAACTGTGAGTACCCTCGATAGGGTGGCGAACATGGCCAGAAGTACG
AGAGGAAAGATTGCACAAGGGGGTTACCCAGGTTCGGGCCCCCATATTGAGGTAACACCC
TATGTCATGCTTCTGTTTTGTATTCATGGGGGAGCTCCTCGTGCGAGAGGGTTACAAGGG
AGATGTGTATATGACTACCAAGAGTTGAATCTACGTTCTGGATGGGAATAACTACCCATA
AAGCCTCCTTATACACACAACATGGTCTAGGATTTACACTAGGATCTATTTGGTCTCATC
CGTCGTCACCTTGACTTGCACGCCAAGATTGTCTCTGAGCCCTATCTAGGCCTCTGAGCT
CCCTCCTTTCGTCGAGCTTCATACAGGCATCACGGGCCCCATGGTAGGCATGTTGCTGGG
CTCCCCGTCAAGAGGCTAACCCCGGTGTATTGCACCATTCGTATCCCCAGAATGTCTGTG
GAGTTGGAGTATCTTGGTCTTTTGGGATGAGAACCCAGGCGGGCTCCTTTTGTCATGATA
ACCACCATAGCATGTCCTCGTGAGTCTGACTATAAAGAGTTTTCAGGCCTACCAAGTGAG
CGGCTTCTCGCATAGCATCTTCATAGTTTTTGGAACAATTGGTTAGGGCTCTCAGGATTC
GGGCCTCCATCTCGCCTTCTTCCATGTAGAGGATTAGGGACTCGAGGTCATTCGCGGGAC
CCATGTGTTATTGACTTCTATCGAGTATTCGTGTACTGAAATATGAGGGCCCATTTTCCA
CTCTTGCGTGGATCTCCACGTCACGCCTCCTAGATATCGAGGCATCACCAACTCGCATAG
TCTCATCCCATCATGACTGGCAGGGAGACCAGTGTGCGTGTGTTGGTTCCACATTGGCTA
ACACGTCGTGATGATTGTGCATGGATTCCCACACCCATGTCTCGCAAAATGGGAAACTGC
ACGGGAAATGAGCACATGGCGCTCCGCTGAGCCCGTCACTTCGGTTTCCCTGTTGGGTAT
AAAGAGGGCAAACAGAACATTTCCCCATTCTCTCATCATTGCCTCATATCCACCCCTTTT
TCCCTTCTATTCTCGATGTTATTGTTGCGCGTCATCAGCTCGATCTCCTCTTCCATCTTC
CCCTTTTTTGGTTCAAAAAGATTTCCAAGGGAGAAACATGTCGTGGTCGGACGCGCGCCT
AGAGCGGGCCTCCGGCCACCTGTAGGGTAATGCGGTAGAAAACAAAAAATATCCAACCTG
TGCACCAGCCTATGACCACTATGAAAATGCATACAAGGTTTGACCTCATTGTTACCAACT
TGTAGCGCAGCAGAAGTAGAGATGGCAAAGACCGTTGGTGGAGATCCCCACACCTAGGAT
TTTACAACCTCCCAACTACAAGGATGTTCTCCCATAGATAGCCCCTCGGGTGGTCCCTTA
GACAGCCCTTCGGGAGACCTTCATACATTCCCTCGACTGCCCTTCGGGAGGCCCTAGGAC
AGAACCTCAGATAGCACTTCATCGCGTCTCTCTAACTAAGAGTGAATCTATGACCTCTCT
ACCGGGTTGCACACATTCGGTATCAACTCCTCGGCAAGGCTTCGCAGTCGAGAACTAGGC
CCTACCGAAGACTAGATAGCCTTTTGATGTACGAAACTATTTCGTGGGGAGAGAGATAGA
AAGCCAGATCATTTCATGGCATGTGTTGAGATAGAACTTGGATGAAATGGAGAGCTCTCT
CCACCTTAGTTTATATTGGGAGGCAAGGGGTAGAGGCTATGGGAAAAGACCAAAACAGCC
TCCCCATGACATCACCCACTACTTTAGGGTACATGTGGCCCCACTGAGCCGTCTCGAACA
TATCTATTTTTTATTATTATTTCATTCTATTATTTTATCAATATTGTATGCTTTATACAC
AATTTTATATCATTTTTGGAAACTAACCTATTAACTTAGTGACAAGTGCCAACTGTTGCT
TTGTGCGTGTTTTTGGATTGTCAGAAAATGTGTACCAAACGGAGTCGAGATGCGACAAAA
CTTCTTAACAATTTTTTGTGGACCAAAGATACCCTGGAAGCTTCAGATGGAGTCTAGAAG
CCGCAGGAGAAGACGACAAGGCTAGGGGTGCCCTGCCCTCCCCCTTGTGTCCTCATGTGG
CTCCGATTGACCGCCTCTCTGGCCTATAAATTCACATATATCCCCAAAACCCTAGAGGAG
CTCCCGAAACAAAAATTTCACCGATGCAACTCTTTGTTCCTCCACAATCCCATCCGAAGG
CCTTTTCCAATACTATGTCGGAGGGCGGATCCATCATGAAGGCCATCTTCATCGACCTTG
CTACCTCCCTAATCATGTGTGAGTAGTTCCACCAGGATATATAGGTCCATAGCAGTAGCT
GGATCTCTCTCTCTCTCTCTCTCTCTCGTTTGATCTTCAATACAATGACCTCTTCAAGGA
CCTATTCGATGTAATCTTCGCGGTGTGTTTGTTTGGATCCGATGAATTGTGATTTTATGT
TCAGATTATTTTGTTGAAAGTAGCTGATCAAATTTGAGATTTATCATGTGTGATTTCATA
TAGCTATGTATGATTTCCGATCTATAAGTTTCCTTTGGCCCAATAGATGAGTAGATCTTT
AGAGGGAGTGTCCCATAGTAGTAGTGATGCGGAGCATCCCATGGTCATCNNNNNNNNTCC
ATCATAAACACCTCAAGCTCCAAGTGATACCATGACAAGAGCCCGTGCACGTGCCATTGA
AACCGAGGTGACATCTCTCCTTGCTCAACCATCATTCGATCCACTCGAGACATGGTCACT
ACCTCAAGAAGAAACACATTGCATACTCAGATACTCGGAAGAAGATCATGGAACGACTAT
GAAGGACCATGAGGACGCCAAGCTCGAAAGAACCAATGAGGAGCTGCAGACATGCTACAA
CCTCCGGACGACCGGCGAACTACGAACGTCCGACCTGTGGAGATCAGCCAAGTCAGAGGC
CAAGCTAAACACTAGAGTGAACGGATGACCGACCTTGTCCGTACTTCCGACACCTCCGAG
CGTCCGGACGCCCAAGCTCCTCCAGAAGTCCGACGTCGCCAAGCCAACGTTGAATCTATG
GAAGACCGAAGCCCTACGACCCCTAAATTTGTGCATTATTTAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTCACTCTTCCATGTCACATACATCGTGGTGGTG
CACATATAATATAAGAATGAATAGTAATGCACATGATACCAACAAGATAAGTGAATGGTC
ATCACAAGGATAGCTTAAAAGATAATAACGTAGCATCAACCAAGCAAAGTGTATGATCAA
ACACATGAACAAGTATAAGGTCATCCAAAAGAGCCAAGTTTTGTAAAACCAAATGAGAGA
AAATTAAGTCAAAAGCTCTCTCTCTCTCTCTCTCTCTCTCAGCCCTATGATCTATACATT
TATCCCCCTTTGGCAACAAGTTACCAAAAAGTTAAAAAGTATAGAGCTAATCGTCTCTCT
AGG