morexGenes - Barley RNA-seq Database

Contig contig_41201
Source Contig contig_41201
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41201 (9094 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_41201

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56863	1	1088 bp	MLOC_56863.1	Available	Available	LOC_Os12g01030.1, FRAME:+1, EVALUE:1e-118, 13112.m00003 protein monoglyceride lipase, putative
MLOC_56864	2	1358 bp	MLOC_56864.1	Available	Available	LOC_Os11g01020.1, FRAME:-2, EVALUE:7e-48, 13111.m00003 protein RNA recognition motif containing protein, putative, expressed
CDS Structure of MLOC_56863

CDS Structure of MLOC_56864

Contig Sequence (9094 bp)

>contig_41201 9094 assembly3_WGSMorex_rbca.fasta
TATCGGTGAACCTCGTTAACAAATATCGTGTCTCGGTGTGTCGTCTATGATCTTGCATTA
GCGTTTTATTCTAACAGCGATTTGCTACGTTGGTGATTAATTTTGTTTCATTTGCTTGAT
CCGCACGGACAAATGACGAAGCAAACGCGTGCAATCCACACCTTGCACGATCCATCTGTA
ACTACATACCAATTTAAATATGAACCCACATACCCTAGCTATATAGGAGTATGTCCCTAT
ATATACATTTAAACGTGCATGCACCCACATGGTCTATCTATAAATACGAACGCGTGCTCT
CCTGCTTTCAGACAATTTCGATCTTGATTATTAGCTTTCTTTCTGCACAACGGGTCGAAG
AGATCGACGATGGCCAAGCTCAGCACCAGCAGCAGCAACGTCGATGATGGGTACGAATAC
GAGGAAGAATACATCAAGAACGCGCGCGGGATGAGGCTCTTCACCTGCCGATGGCTCCCC
GTCAATGCCACACCAATCAAGGCCCTCGTCTTCATGTGCCACGGTACGTAGTACTACGTT
AATCGATCGCTAGCACGTATACTACAATAATTGTAAGTACCTTCATCGATCGATCGATCG
AGCTGATTGATCAAGTTAGCTAGCACCATTACACCATTATTGCTTTATGGATCCCTGCGA
CGTATGCAGGTTACGCGGTGGAGTGCAGCGTGACGATGCGCGGCACCGGCGTTCGGCTCG
CGCAGGCCGGCTACGCCGTCTACGGCATGGACTATGAGGGCCACGGCAAGTCGGACGGCC
TCAGGGGCTACGTCCCCTCCTTTGACGTCCTCCTCGGCGACTGCGCCGCCTACTTCACCG
CCGTCGTTGCTAATGCTAACCAAGCAGCAGGGCCGCCGCTGCCACGGTTCCTGCTGGGCG
AGTCCATGGGCGGCGCGGTGGCGCTCCTCCTCCACCGGGCGCGGCCGACCTACTGGACGG
GCGCCGTGCTGGTGGCGCCCATGTGCAAGATCACGGAGGAGATGAAGCCGCACCCTGCGG
TGATCAAGGTGCTGGAGGCCGTGACCAGGTTCATCCCGACGTGGAAGGTGGTGCCCACCC
GGAACGTCATCGGAGCCGCCTACCGGACGCAGGCCAAGCGCGACGAGATCCGCCGGAACC
CCTACTGCTACAAGGGCTGGCCGCGCCTCAAGACGGCGGAGGAGCTCCTCCGGGCCAGCG
TCCGCGTGGAGAGCGAGGTGCTCACGCAGGTGACGCTGCCCTTCCTCGTCGTGCACGGGG
GAGGCGACAGGGTCACGGACCCCTCCATCAGCCAGCACCTCTGCCGGGAGGCGCCCAGCA
CGGACAAGACGCTCAAGCTCTACCCGGGCATGTGGCACGCGCTCACCTCCGGCGAGCTGC
CCGAGAACATCGACAAGGTCTTCATCGACATCATCGCATGGCTCGATCACAGGTCCGGTC
CGCCCGCGCCCGAGCCCGAGAGGGACGACTGACGTCTCCCGTCCAGCAAACAAATCATCC
ATAAGAACTTCTTTTTTTTTAGGGAACTTCTCTTCTTTTTTTGATAAGTGTGCCCCAATT
AATTATTACTATACTCCGTAATTAAACTCCAGCTATACATACTACTCCTCTCAGCATTGC
CATCATAGCCAGTAGTTCGTAGGGAAACGTTCAGGTCGTCCACGCGACCCGCCATATGGT
CATGCAACATTTTCTTATGGGGTAATCGTTTAAATTTGTTACAACTGGTGTCCAAATTTA
CTATATTTCTTTATTAAAAAAGCTACATATATGTTTGGTTGCAACCTCAGTTCGTCGGAT
TTTTTGCTACAACCAGTGTTTTTTTTTGCTACAACCGGTATTATTTTTTGTTACAACTGC
TCATTAAAAAAGTTGCATACACGTTCTCAGAGTTACAATCCGGTCCTTTTTTTTGCTACG
ACCACGTTGATATTTTTTTTGCTACAATCATATTTTTGTTGCAACCATTAATGAAATTTG
CTACGTCATGACCTAAATTTGCTGCATCGAGGGATTTTCGCTGCATACGAGATCTAACGA
TGCGGCCCGTGGATCTAACGACTGGGCTGCGACCTGCGCGCCGGCGCCCAGTACCGCCCT
AGTTCATAAGAGTACCTAGTACATATTTAGGGCTACTACTCTCTACTTGTGGGTACGTGG
ATTGATTTGATCTGCTCTAACTCTAGTTTCTCAGCATTGCCATCATAGGCAGTAGTTCTA
CAGCCTCCTCCCTTCTCTGGTGGAAGATCACCATAGGCTACAACCTCCCCTAATTGAATA
ACAAATCAATCAACTGTCAAAGCAACATGCCACAAATCAGTTGCCAACAACAAGCAACAA
GACATAAACCAGCCAAACAGGAAGTTGAATGTGATTGCGGCTTCAGAAAATCTCATCTCA
AATAGACCAATTCCATCCCTCCTGCTACACCGCAAACCAAGCAATGGCACCTCATCACAC
AAACACGTTCCCCTCCATTTTCATCACCCAATGCTACCTTCTACCATGCCAGGTTAGCAT
AAAAGATCGTTATCCAACTAATATAGGTCAGGGCCATATATCACTACAAATAAAACAAGA
ACAGACGCAAGGCAGTACCAGATCCATTTAGCTGATCTCCATTGCAGCCGAGTGGTACTT
GTCCAAGTCGGCGTCGAGATCTGCAGCAGAAATTTCCAGGTTGCCCCGCCCTCCCTTCCC
TCGCCCATGGTCGCTACGGACTCGGCCACGACCACCGAACCCACCTCCGCTGCGAGCACT
GAACCCACCTCCGCCACGAGACCATCCTCGACCGCCAACACCCATTGCAGGTCCACTGCA
AAATTTATTGCTGATTCGTCACTTGCTCAAAATCTTCAGAGACAACACAGTTGAAATTAT
TGATTTATATGGCAATGAAGTTTTAACATAATGATAACTACCTATGGCTGCATCAAAAGG
GAGCCAATTCAACTCCCATCTATGTCGGCAAATCTTGCATTCTCTTCTTTCTATGATGTC
GTGGTCCTAGAATATAAATAGTTTCTACATAGCACCTGGGGTAGATGTTACAAACCTTTT
GGAAGGAAAACTGAAGTTTCCAGGCGGTGGAGCCAAAGCAAAAATAGCAGGTATGGGTGC
AGGTGCCTCAATGTTTGTCCCAATGACTTCAATTTTCATAGGTTTGCCATCAAGATGCAC
GTTGTTGTACTTCTTAAGAGCAGCTACAGCAGACGATCTTGCCGAAAACACAACCTCTGC
AGTTCCCTGGAAAAATGGAGATTCAGTAATGGTGATGAATCATGACCATTCAAACAAAAT
TGAAGGTGAAGAAAGTGCATGTGTGTGTGCCGGGGAGAGGGGTGCAAACCTTTGATCTTC
CACTCTTGTCATAGTTAATGGAGTAGCGCTGGATATCACCCATCTCAGAAAACAGTTCCT
GAGCAAAGTAAACAATACATTGTAGAGAAACTTTAGGAGAAGGAGACGATAAACAGAGAG
AAGTTACTCGTTGCTTTGAAGGCTTAAAGATAAACGACTCCCAGGTCTCAGCACTGACTC
ATGGCTAACAGATAAAGTAAAGGAAGGTGAAAGAAAGCAAATTTATGTACATAAGCTAGA
ACCAGTGCATGATTGTGTCAGTTAAGAATGAAGCCGTTAACACAAGAGGTTTTAGCCGAT
TAGAAGAAGCTACGGATGATGAATTACCTACGTACTCGTTGAGATCTCTTGAGTTGAATG
TATGGCGAGTTTGTTAGGGACAGCAAATCAAGGAAAGTGCAGTTTTAGGGATTATTAACT
ACTCTTATTATTTTTGAGCAAGTGAATTAATCACGAGTTCTTTTTAGCAAATCAAGGAAA
GTGCAGTTTTTAGGGAGTAGCAAAGAAGACTGGAAGTAGGAGTAGGAGCGTTAGCGACCT
TGATATCCTCGTTGGAGACGTTGTAGTCGAGGTTGGAGATGTAGAGCTTGGTGGGCGAGT
CCAAGGCAGACGGCGCCGTTACCATGGCCATCGACTGGGCAACATACCCAAAAGCTGGCG
GCACCTGTGCTCTCCAAGAACATGAGAGATGAAAGAAGATTTGAGTGAGCTCGAGGGTGG
CAGTGTATTTTGCTCGCTGGGAGGCGGTGGACGGGGCGTTCATCTGCTTAATCACGACGA
AGAAGGCGAGGAGGAGGAATAGACCTGTTGCTGGAGGCTGAGTTGGTGGTAGGGCGCGGC
GACGGCGCGGGTGGCGGCGCGGCTGCGGAAGCGGCGGCGTGGGCGCGCGGATCCACCCGA
GGCGGCGGACGCTGGGTTGTGGCGGCCACGGCGGTGGTGGGGCTTGTTCTTGGTGATGAT
GTCGTCGAGCGACATGTCGAGGGTGTCCGCCATGCCACGAACCCTCAAGATTCGCGCGGC
GGCGGCGGCGGAGGAGGAAGAGAAGAGGAGGCGCGGTTGGGTGCTTGGGGTTGGGGGTGG
AGACGACAGCTGGAGAGAGAGAAGTGAAGTTAGTGCCGGGCTGGGTTGGGCCGATCGTTC
AGTCTGGCTAGTGTTGCTACACTACTTACTTTCTTCTTAGTTTTTCCTCTCGACAGGGTT
ATGGTTCTCACTGCGCGTCTCATCGCCGTCAGGTTTGACCATTTCTGTCAAGTTTTTTCC
GTGGAGTCTTCTCTTCATTTGTCTAGGGTGCTGCACGGGCCGCGGGGGACCACGAGAGAG
CAAGGAGCCTAGGGTTTCCCCGTAACAGCCCGATCTAATTTTTGGGTTAGTGATCTACAT
GGCTTCTGAATCGACATCGAATTCGTCTAGGATGAGCGACTTCGAGAAGATGATGCAAGA
GTTGGGCCTGAAGGAGGAAGACCTTGACGATGTGGTCTTCAATTCTCTTGCCTTGGGGAT
TGGGAGAGGGTCATGCAAGAGGGGTCGTGGCACTTCTGGGGCGATGTTGTAATCATTAGG
GAATATGACGGGACCTCGAAGCCTTCCATCGTCAAGCTTGACTCAATCGATATCTAGATT
CAGATACATGATGTGTCGGAGCTCTATGGCCATCTGGTGCCGTCCCTAGCGGCTAGGGTG
GGCGAGGTGTTGTTCACCGAGACTCGGTCGCAAGACTTCACCGAAAGTTTCCATCGGGTT
TGGACTAGGATCAATGTCAATAAGCCTCTCAAGAATGTCGTCTCGATGATCAGGGGCGTG
AACGTCAAATCTACAAGGTCAAATACGAAAGGCTGCCAGATTGGTGTGTGGTCTGTGGTA
TGATGGGACACCTTTTCAAGGAACATGGCAATGGCATCCACCCTCCTTCGGCACCGGTTT
TTAAAGATCCCAGGGCCTCTTGGGTTATGCATACATGGAGAGGACCTGATGGAGGTAGAT
GTTGCAGAGGAGGACGAAGAGGAGGTCGAACCAATATGAGGGGGAGGACAATGATGGTGA
ACTAGATGCAAACATGTTGGATGCAGAAAGTAACAGAAAGAGGGGATCTTCAGCCTCGAC
ACTTTGGAGTTCAGCCATGGAACAGGGGAAGAAATTGGCGCTGGTATCACATGTGATTCC
CCCAAGGCCAAGTACCTCACAGGAGATGAAGAGAACAAGTGTTCAAGTTGATGGGGACAA
GAGTTTGGCAGCAAACCATGGAGGATTGACCAAGGGTGATCTAAAGTTGGCGGGCCCGAT
GGGCGAGCACCGTCGAGCCTAATGAGTGTGTGTTGCTGGAACTGTCGCGGCGGGGCAAGG
CTGCGACAGTCCAAGAACTTTGCGATTTCGCTAGGAAATTCGCCCTTACCCTCCTTTGCT
TCGTTGAAACTCGGCTTAAAGGCTCGAGAGTAGAAGCATTAGCAGGAACTCTTGGTTATG
ATAATGGTTTTGCTGTAGATAGTCAGGGTAGAAGCGGTGGCATCTGTATCTTTTGGAATA
AAGAAATAAAAGTTGATGTTTTGGGTTATTCAGTTTGTCACCCTGATTGTGATGTCCTTG
AACCTAGGTTTGATCCATTGAGGCTGACCGTGGTGTACGGAGAAGCCCAAACGAGCCTCA
GACACAACACCAGGGGGTGATGAAGGATATAAGCACATCTAGCAGCCTTCCCTTGCTTTG
TGCGGGGGATTTCAATGAAGTCTTACGCCCACACGAGCATGAGGGGGTTGGTCAGCGGAG
CAATGCCCAAATACAAGCCTTTCGATGGGCAGTGGATGTTTGCATGTTGGTTGACATAGG
GTATGTGGGGAATTTCTATACCTTTGAAAAGAAAGTTACACGAGGAACGTGTACAAAGGC
ACGGCTCGACCGGGCACTGGCATCTTCTGAGTGGTGTGTCTTTTCCGTGCGATGGACCTC
ACTCATCTGGTGGCTGCCACATCGGATCACTGTCCGATCCTGGCAAACCTAAACAGAGAT
CAGCACCAAACCCAACGGCCTTGTTCTTTCAAGTACAAGGTTATGTGGTAAGGGCATTCA
ACATGGAATAAAACCATAGCAGAGACATAGTCATCCCGAGGACCTTCAAATAGGGTGGAG
GAACTACGGGAAAAGCTTCGGGTAGTAGCTCACGATTTACGATGATGGAATACTAACACC
TTCGGCAGTGTTCACAAAGAGATAAAACCCTGAAGCTAGAACTGGAAAAACTGCGGTCTA
AACCCAGCCGTTCTGCACCCACACATGTTGAACTGAAGATAAATGAGAAGCTGGTGGAAC
TCCTACGCAGGAAAGAGATCATGTGGCGCCAAAGGTATAGGGTGGAGTGGCTCACCTCGG
GGGACATGAACACTAAATTTTTTCACCTGAGAGCTAGCATTCATCAGAAGAAAAACATGA
TCAAGGTGCTGCAAAGCTCGCTGGGGGTGTTAACTGAAGATCCCGGAGAACTACGGGCAC
TGGTACACAACTTCTACAAGACCCTATATACCAACGAGGGTGTTAGAAATATGGACGATG
TCCTGGAGTGTGTACCGAGGAAGGTGAAGCCGGAGGTGAACGAGATGTTGTGTGCCCCAT
ATTCTAAAGAGGAGGTCAAGTCCGCACTGTTTCAAATGTTCCTGACCAAAGCACCTGGTC
CTGTCGGCTTTCCGATGCACTTTTACCAGAGGCATTGGGAGCTATGTGGTACAAAGGTAA
CTGATGCAGTACTCAAGATTGTTAGGGGGGAAGGCAGCGCGGAGAGCATCAATGACACAA
TACTTGTGTTAATTCCCAAGGTAATGAATCCATCCCTCCTGTCGCAGTTTCGACCTATTA
GCTTATGCAATGTGATTTACAAGATTACTTCAAAGGTCATTGCGAATAGACTCAACACAA
GTCTTGCCTGATGTTGGGGATATAACTCCATGGTATAACCTGCCATACTGGTCCGGGTCA
AACCATAGAGAAGACAAGAAGATGGACCAAAGGGCTTATCCAATCAACCGCATGGCGTCC
CAACACTTGAATACGGTGACTCCAGGCCCACAAGGCAAGAGACGCCGTAAGTTTTCCTAA
ACTTGGGAAGAATGATAGAATAGAGTTCTAGTAAGTCACGGGTGTTTATTTGACCGGACT
CTGTTGTAAACTCGAGGCATCTACTTATATATAAAGGAGAGCCCTCGAGTCAGAAAGATC
AAGCAAGAAACTCTCGAGAGCTAGGTTAGCAATTACCATCCTTGTAATCGAGATACCCAT
CAATATAGACACAAATAAGGACATAGGCTTTTACCTCCATCGGAGGGCCAAACCTGGGTA
AATCCCCCTCTCGCTCCCGATTAACCTCTTTGAGTCGCCACACCGCGACGATGGCCTCAT
CACTAAGTCCGTTCACGACGACATGTGCCGTGACAAAACCACGATAATTGGCGCCCACCA
CGGGGTTATCACAAGGTTGAATTGAGTCCTCAGAGGGAACCCGCACAGGGTTTGGGAGGT
ATGGGGTTGCTATGATAATCAATAATCACTGTAGCGATCGCTACACCAACAATCCAGACC
GGGACTTTGAGGCCGTCTTAGCCAAGTCTAGCCAACAGGTCCCCTTCAGCCAGATCTACA
CGCTGGCGCCCGAGTCGGACATCTACACCACCATCGTCGAGCCGGCTCGATGTGCGCAAA
ACGATCGATGTTAAGCCGGTCGTCGACACGTTTTCATCAAATTCACCCAGGGGCTCAGCC
TTCCGGATGAGTTGGTAGGCAGCAAGGATATCCTCAACAACCATGATGGTGAGTCATTCA
TTGGAGACACTGGGTCTATCTTGCCTCTTAGTGATGGACCTAGGGACCTTCTGAAAGAAG
AACAAGCTAGGGAGTCGGATGAACCGCCTCGTCAAGTCACGATCTACATGGCTAGAGTCG
CGTCGGCTCCGGGTCCATCTGCACAAGGAGCCACCAACGGCGCCGGCGGGTTGGGCAACT
CGGGGCATGAGTGATCTCGTGGCTGAGATGGCCAAACTTTTTGAGGGCCCTGTCACTGTG
GAAAACCAGGAGGAGCGTAACGTGGAATTAGAAAAACTTCACGCGTAGATGGTCAGGTTT
CAGCGGAAGATTGATGCCGAGAACACTAGGATGGCAGAGTTACAGGCTCAAATCCAAGAT
GAGTTGGATCGTTTCAGGACAGACGCCTGGCGGCTAGGGCTTCAATAGAACACTCATGAG
GCAGTTCACCATAGGAGGCATCTGTCTCGGTTGCCGCAAAACCTGACGCTGACTCGTTTG
TTTGCCAGTCCACACACGCCATGCGTTGCACAAAATCCGCCTCATGGACAGGTAGAGACG
GCTCTACCACAACTGGCTCAGCCATCACCACAACATTTTCACACCCGTAGAGTCACTCTT
CCAACCCCATTGACAATATGTTGTCTACAACGTGTAACTTGTAGGCGCTCCCCATTCACG
GAAATACCCCGATTGAGATTGAAGCTAGAAATGCCATTCAGATGTTGAATACGGTGGTGG
CTCAACAAGCTCATTTCTCATATAGTCGAGATAGGATACACTCCACACCTTATATCAGCC
GTCATGAGGAGTCGTCGGCTGTTTCCAGCAAGGGGCGACTATTGGGGAACGTCGCATGGG
NNNNAAAAAAATTCCTACGCGCATGAAGGCCTATCATGGCGATGTCCATCTACAAGACGG
GATATTCGATCTACGTACCCTTGTAGATCACACA