| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
 |
Predicted Genes from contig_41197
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_56857 |
1 |
2576 bp |
None |
Available |
Available |
None |
| MLOC_56859 |
1 |
1587 bp |
MLOC_56859.1 |
Available |
Available |
LOC_Os10g13960.1, FRAME:-1, EVALUE:3e-18, 13110.m01229 protein retrotransposon protein, putative, unclassified |
| MLOC_56856 |
1 |
696 bp |
None |
Available |
Available |
None |
| MLOC_56858 |
2 |
3061 bp |
None |
Available |
Available |
LOC_Os11g24560.1, FRAME:-2, EVALUE:1e-16, 13111.m02341 protein protein transport protein, putative, expressed |
CDS Structure of MLOC_56857
CDS Structure of MLOC_56859
CDS Structure of MLOC_56856
CDS Structure of MLOC_56858
Contig Sequence (6869 bp)
>contig_41197 6869 assembly3_WGSMorex_rbca.fasta
TCTACTTTGTTCCATACACATTATATATTTTTGTATATGTTTTCTTATACACCGGAAACA
TTTTTCTATGCACATTTAAAGTTTTTTAAATACACGATCAAAAAATTTAAAAAATAAAAG
AAAAATATATTATTTATTGTCCATACGCACTGTACATTTTTTTGTACATATGGGAACTTT
TTTGCCTACAAATTTGACATTTCTTTAATCCATGATTAACATCTGTGCAAAGTTTATCGA
AATAAAGGCAAAAGAGGAAAAAAAAGTAGAAAAGTGCGAAATAGAAGAACAAAAAGGGTT
TCAAGCCGGAAACATTTTTCTATGCACATTTAAAGTTTTTTTAATACACGATCAATATTT
TTCAAAATTAAAGAAAAATATATTATTTATTGTCCATACGCACTGTACATTTTTTTGTAT
ATATGGGAACTTTTTTGCCTACAAATTTGACATTTCTTTAATCCATGATTAACATTTGTG
CAAAGTTTATCGAAATAAAGGCAAAAGAGGAAAAAAAAAGTAGAAAAGTGCGTAATAGAA
GAACAAAAAGGGTTTCAAGCCGCGATCGAGATCAAACCTGGGTCTCCAGGGTGGGACAAC
GCACACCCAACCGGTTGGGGTAGGCTTGTGCTTGTGATAAAATACAGAACCGCATCCTTT
AGAATTAGAAAGAAAGAGCCAAATCGAAGTTCAAAAAAGAATCGTTTTTGTCACTTACGG
GTGGCATTGGTGGGTAATTTTGGCGAACTTTAGGGGCAAATTTAATGACGTACCACAGAA
GCAATAGATGCTTTATTAGTAGGTATAGAGGTATAGATATAGATATAGAATAGAATTTGA
CTTCTAGTGTTGGTTAGGCGCATCAGTAGTTGATATCATCTCCATATGACATGGATATTA
TATGCTGATAAAAGAGGAAATCAAATGAGAAGAGAAGAAAGAAACTATAACTATTATCTA
AAGCTTAGACCAATGCCATTTTTCTTCGGCTTGCTATGATCTACCTCCTTGGCCTTAGGT
TCCTAGCTCACAGCCACAGCTCACCGCTCCCAAGTTCCAAGGCCTACTGTCAACATGTAT
TGCTTCCAAGTGCCACCATGTGAAACCACCCACCAAAATCTGGTTGCTGCCTGCTGCCAC
TGATGGCACTCCATGTCAACGGCTCAAAGGCTGCTCACCCAAATCTAGTAGCTGACAGGG
AAGATGGCAAAGAGAAGGATGACAGTGAACAAAGAATGAAGCACCGAGCAGTAGCATGAG
TTCATGGCTTCTTGTTGAGCGGCCATGAGTAATCAACTCTCCCAATAACAAGATGGAGAA
GAGGCAGGGCAAGGGGATAGAGAGTTAAGTTAGAGGAGGATACGCTATTGGCACAGAGAC
AGCATCTGCCAGCAAAACATGACCAAGGCCACCAGTTTCAAAGAAGAGATGTGAACAACG
CTGATCTACTCAAGGAGAGCAAGCCAGCGAGCAGTGTCCATGGGAGAGATAACAAGATCC
AGCAGTTTGAAGCTTACCACCTCTCTCCTGTCCCGCCATTGCTACTATTCATGTTGTCCA
GTATTACTCATTAGCACCAAGCATCCAGCAGCTGTGGGGGTGATCGCTGATGATTATTGT
TCATTCTGCATAGCAGAGATCAGAGACTAACCGGGCTGGGGGTTAAATTATTTTAAAGAA
TGATTCTGCTGATCTATATGGGGAAGAGTCACAGAGCGAGGAGGCCCGATGGATGTTCAT
CGTGTGATGTGGATGACCAGCACAACAGACAAACCACAGAAGGTGGTGAAATTATCTGAG
ATACTCCCTCCGGACCTTTTTTCTCTGGGTCTAAGAGCAAACACGCATACCAAGGCATGG
GTCGCTGGCTGTTTCCTGGACGAGATTGCCCCGGTGGCCCTGCGCAGCATCGATGGAATC
AGCCGATGGTAATAAATTTGTATGCAACCTGATTGGCTCTCCTCCCTCGCCTCGTTCCCA
ACGTTGCATGCCGGCGTCCCTTTTTCTCCAGCGGCGCTGCACGCGAGCTTCTGTTCATGC
TAGCAAAATTTCACCTCCCTCCTAATCCTAAACGAAACAGGACACCATGGAGTAGCTTCA
AAAATTGGCCGCGGAAAGTGAACTTATCGCCACAGATTTGGAATTCCCTCCGAAACTGAC
AAACCCACTTTATAAATCAAGCCCCATGAACAGACAACATGCACACTTATGCTCAGTCTC
GCCACACTTCTCTTGCTCGCCACGAGCATGCATGGATCACCGTCCTCCGCGAGTGCATGG
ATGTCCAACACGAGCGCCATACCTCGCGTACACCTGGACAACGCCGTTGCCTTTCCTGGA
CAACGCCGTTGCCTTTCTCCGCTTGGCTGGCTGCCACGAGCACGCCATCCTCCACTAGCT
TGATGTCCTCGACGTGCGTGCAGACCGCCAAGAGGACACCACCGGCCGCGAGCACGCTAT
CATCTGCGAGGACGATGTGGTCCACAAGGATGTTGTGCTCTGCGTGCGCATCGTCCGCAT
GCGCATCGTCCGTTGTGAGGATGCCACCGGCCGCAAGCATGTCGTCCTCGGCGTGCATGC
CGACCGCCAAGAGGATGCCACCGAACGCGAGCACGTCGTGGTCCGCAAGCTCGTGTCCTC
GGCGTACACGCCGACCGCCAAGAGGACGCCATCGAAAGCGAGCACGTCGTGGTCAACAAG
CTCGCCGTCCTTAGCATGCACGCTGTCCGCTGTGAGGATGCCACATGCCGCGAGCATGTC
ATCCTCGGCATGCACGCCGACCGCCGAGAGGACACCACCAGCCGCAAGTATGTCATCATC
CGTGAGGACACCATGGTCCGCGAGTTCGTCGTCCTCTGTGAGGAGGCCATCGGTGGCAAT
TATGATGACCGTAGCAAGGTCACCACCGGCGACAAGCAGGCCTCTGTACATGAGGAGGAG
CTCTTGTTCCATCTTCACCGCGGTTGTTCTGTTCACAAGCATAAGGCCCCATAGGTTTTC
TCTCTCCCTCACAACAAATGGGACCCGTAGAGAGATGAGGAGATGTGGTAGGAAGACGAA
GCACGGCAGCCGAAGAAGTGGAGGGGCAAAGTTGGAAAGAAGCGATGAAAAAGCCTTACG
CGCAGAGCATTGCAAGAAAAACGGGAAAAAATTAAACGCAAACTAAAAAGATCGGAGGGA
GTACAAAATATATTGATTGTTCATACAGATCTACCTAGACATGCCATCTTTGGATGAAAA
TGTAAAAGGTAATGAAACAAAGATGATAAGGGACAGCAAACTTACTTAAATGACAGGCCC
AATGAATGTTCACCTCCCTCAAAAATGCGTTTAAAAGAATCCTTAAACACGGAATGCCCA
AAACTCTCGGATAAGACAACAAGGCCGCATGTTCTCTCAATAGCAAGCTTCATCTCAGCT
AGTCCAACCTGTTTTGGTGTTTCAAACATAACACAAGTTCAGTCGAACACCAATACAAAA
TCAACAAGCACAATTGGAGGATAATAAATGTAGCTTCGGATACAGGCCATTCTAAACTCA
TACAGTGTGATTTCATTAACATTTCCATCTACTAACTGACAACAGATCTTCTCAGAAATT
ATGACATGTGATTTATTTTTTCTTTGAAGTAATGACATGTGAAATTTTTATGCAGTATCT
TTCCCAAAAAGGCAAATCCCATCTTTTTTTTTCTTGAAGCAGCAAACACAGATGTCACAA
AATCAAATTTAGTAATACGTTATAATTTGTAGAACCGATCGCTAGTGATCTAAACGGCCT
TATATTTCTTTACAGAGGGAGTACTATGGAACATAGAAAGAGTATATTGCTGATCATCAA
TTGGAGCAATAGTGAAAGAAGGACAAGAAAATGGCTACAGCAGTGGGTCAGTTTGGGACT
TGTGTGGTATACTGGGTACTGCCAATGATACTGAACTACTGACTGTGATCGAGTACTAGC
CAAACTTGTTCAAAGAAACACTTGGTTACACGTTTGATGGGCTGGCACACATAGCATCTC
TCCCTTCCTTGAGAAACAGCTTGTCCGCAAGCTGTAGCTTGTCAATTGACTCCCATGGGA
CCTTGGGTGCTACTTGTTGTGGAGCTATCTTGGCCATAGTTGTCAGCCTCAATGAAGAAG
AGCCGCAAGCACCGGTGATCACGAACATCAATCTCGTTGTAGTTGAAGCAAAGGCACTGA
TGATAACGTTATGCCAACTTAGTGGGGTGAGGCACCGAACTTGTCAGTGGCAGGTTGGCT
CTGGAGTGGTCAACGGCAGAACAGGTACTAGTGGTGCTGGCGATGAAGATGTCGGAATTA
AGTTGACCGTGGGAGGATCGGAGGGGCACAAGGGCCCCATAGGCTCAAAAGGTTGGTGTG
ATGACGTTGTTGGAGGGAAATGTCACTGCTCATGGGTCTTGGTGAAGGAAACAAGGTCTG
ATGGTCTTTGAAACTCGGCGTCAACTCCTGCCGTGTACAAAGACCGTTGTTGGGACGGTG
TTAATGGCTCATTGTCGCGGCCAATGTTCAGGATATCAGCTGCTCTATCAGGTGTTGAGT
AGAAACTAATCGGTGAATCAGCCTATTTACTGAATTTATCGGTAATCCATTTATCGGTAG
GTTACTAGGGTTATGTCTATATATCCTAGGCTACATGGCAACATGCAATATACTAAATGT
CTAAATATGCTAATGTACACGTGAATGTAACAAAAAAAAGTGTTAGAGCAACTCCAACAG
GCGCGCTATCTTACCGGCGTGCTGAAAAAATGCCACTTTTTGCGCGCACGGACCTGAGTC
GGGTGCTCCAGCAGACGCGCTAAAATAGCGTGCGTTGTAAAGTTGGTTGCTCGCGCGGGG
CAAAACGGCATCCCACGCTGGACAGAGCAGCGATGCAGATACAGCCAACCAGTAGGGCAG
CCCGGTGCATGTAGCTCCCGCTTGCGCAGGGTTCGGAGAAGGGTCCGACCACTTTGGGTC
TTAAGTACGCAGCCTTTCCCTACATTTCTGCAAGAGGCTGTTTCCAGGACTTGAACCCGT
GACCTCATGGTCACAAGGCAGCAGCTTTACCACTGCGCCAAGGCTCCCCTCCATAGCCAA
CCAGTAGCATTACAACAATTTTGGAGAAGGAGCAGGACCCCAAACCTAGAGAAGGGAAGG
AAACAGACTACATTTTTGGGCAAAATAAGCTTTGCCTCCCCTACCATTTAATCGTCCCAC
TGAAATTTTGGCTTTTTATCGGCTGTCGGACCAATTAATCACGTGTCCCAGTTAATTCCT
AAGGGGTTATTCGATTCAGTCAGGTGTCGAGTAGCAGTTAACTGACGGCCGATATTTTGA
ACAGTGGTTGCAGCACATGAGTGCTAGAAACCTGCTGGTGTAGTCGACGACCGGGGAAGT
GAACGGGAGACGCGCCAACTCGCTAAAGGGATTTGCACGAAGGGATGGCCCAAACTAAGC
GTCGCAAGCCTCCTTGAACCGATGCCATGTCAGCATGCCTAAATCACGCTCAAGTTGTAC
GCACCAGAATTGAGCGTCATCGGTGAGGTGGCAGGCTGCATTCCAGACCTTATTGGCCTC
GTCTATGCGCTGTCCACGAAAGAATTGCTCGCACCATTTAACCAACCAAGAGGATCGACC
AAGTCAACAAGCTTTTGGAAGCAGGGCATGCTAAAGCACGGACCCGAGCCAAGGTGACGG
TTAGGCAGGGGGCGGAAGGGGTGGGCAGGGTGGACCTAGGGGGAGGGGCGGCCATACCGG
CGTACGAAATCAGTTGGCAGGTGAAGGCATGTAAGGTTGTCGAGGCGCGGCAGTATGTGG
CTGCTGCTGGTAGGTGAGGGCAGAGAAATTGGGCGGGATTTGGGATGGGATTTGGCTGTA
AGGTGGGGTTCCGAAGTGACCCGGACTGATTCTTGGAGGCAACTGCAGGAGTAAGGAGAA
GGCTAGAGGTGGTAAAGGGGGAATGGCGCCTGTCTGTGGTTGGCAGCAGTTGGCACGGGG
TTGTGTTGCAACAGCAGATAGGTGGTGGAAGGCAGGAAAGAGGGGGTGGTGGGGTGGGCA
ATCTGCCCATAGGGTAGAGGTCTGCCGGCGGCAGCGGTGTCGATTCGCCGAAGCGAAGCA
CCAAGGGCACATCGTCGCTTGGGAGCAGGGCCTGGGACGTGGAGGTGGTGTCATGGGCAG
CTGCTGCAACCACGGAATCTAGTGGCAGGCCAGGGCCAGCAGCCATTGCTCAAGCAATGC
ACCAGCCAGACGAAAAGCACATGTTCCTTCACTCATTCGCATGTGAAGACCTCCAATTGC
TTCGTGATGAACTTCATCTGCTCAAAAGCATCAATCTTGATTTCTTTCCCGAATTGGAAG
GATCTACTTCTGATATAACCCTAGTTACTGAAAGGTAGATAAAAGTAGACGACAATATTC
TTCTCCGCTTTATTGAGAGGGGTCAGCCCCTTTTTATAGAATATAGACAACTAAGACAAG
ACTTGACCGACAAGCCGACATGTCTATTCAGACTCTAATATAATTCCTAAACTGACTGGA
CTCTTTCCTAACAACTCGTAGCCAGTTCCTTTGAGCTCTCCTGTGAAAATAAGCTCCTGT
GAGAATAAGCTCCAAATAAGCTCCTGTGAAAATAAGCTCCAGATAATAAGCTAGCCAGTT
CTTTTCGGTGCCTGTTTTTCCAGCTTATATATGGTATGAGTAGTGAAAAGTCTATAATAC
CCTTGAAGTGGAGCTGGAATGGGTCTTCGACCGGAGTAGGGCAGGGGACGAGGGTCCTTC
GCTGGAGTGGGTCTTACTGACGAGCGCATTGTTGAGANNNCCATGGAGCTCAATGTTCAC
CTTCGTGATACTGATGGTGATCCCCTGCC
