Map Locations of contig_41176 (5687 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41176

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56817 2 972 bp AK377083 Available Available None





CDS Structure of MLOC_56817






Contig Sequence (5687 bp)

>contig_41176 5687 assembly3_WGSMorex_rbca.fasta
TTCCAGAGCCATGACTTGGTTTCGAGATCTTATGGGTTTCANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTGTTGTTGTTGTTGTTGTTTCCTTAAGAAAATTGGTT
GATTGTTTCTCTTGCATCACATTATAGTTTAGTTTCTGAAGCTAACTAACTGAATTTGCT
ATTTATATTCCAGGTTTTAGCACATTTGCTGTCATTTGTTGATAGTAAAGCTGTGGAAAC
GGATCTCATGGTGGATGAAGACGAAGGGTTTATGGAGATTGCTGAGGCCGAAAAGAAAGT
TGAACAAACCAAACCTATCTCTAAATATCCAGCAAACACATTTTCAGGTGCTGGTTTGCT
GCTCAACTGTATCCAACCAAGCTGCACTCTTATATTATTACATTGTTTGCGCTATGACTA
TGAGAAATTTACATTCCATTAGCAAGGATTAGAAATTTGCACCCAATGTTTTTTCCTTAG
CTTATCTTTTTGAATTTAAGATATAGCTTTATTGTAGTAAAATAGTAATTTTTCATGGAG
TTCCATGCCTATTAGCAATAGACATACACGACCTAACAAGGAACAGCTTTCTGACAGCTT
TTTTTGGCATGTCCATCATTTCGTAACTGTCTGATAGTTTGGATCTTTTCCTGATGATGA
AACCTTACCATTTTTTGCATTAAGTTACAACTTCATTTAATCCATGCTGTCTACAGAACT
AATAAGGGCGAGTAAACTGGAAACCTCTTTAGCTATATGCCTATATCGTGGTGTCACAGT
ACTGTTGTAAGATATTTATATGCAAAAGTATTAAAAGCTGATATACCAGAATGAACTATC
AAAATGTGCCTTTTTGGGCAGCCCTGACAAAACTTGAGGCATACTTAACTACAATAAACA
CCTTTTCTATATTCAGTAGTCTAATCCCAGTTATATATCCTTGTATTTTTGCATGATGGT
GTTATGTTTTATTCTCAGGTTACAAAGCCAAACTGGACAAGTTCAGAACACTCTGGAATG
ATGTTCTTGCCAATCCACTCAATTGGACTGATAACCGGGCTGAGAAGGCGAATGGATCTG
TGAGCATGTTGTTTATACATATGTGTTTACTGCCTTCAAATTAAGAAGCAAAGCTTGTCA
GCCACTAACACTTGCAGGCATTTTTATTCGAATTGGGCAGAAAAATCCAAAGTATCCTGA
TTTTAAGAACAAGACATCAGATGAGGCACTCTGGCTTGGCTCAGCACCACCGCATGTGGT
AGAGAAGTTGGATGGTTTGACCTTTAGTAGTGGCTACAATGCGGCTAAAACGGCTACAAC
ATATAAGCCTTTTGATTCTAGCATGGGGAGAGGTAAAACTTTAATCCTAAAATTCTCCCT
TTTCTCCGTAGTTTTTTATACTAATATTCAGTATAAACAACAGGTACGAATACAGGTTGG
AGTAAATTCAAGCCAAGCCAAGCTGCTTCTCCCGAGAAACAAAAAAAGGAAGGTAGGTAA
ATTGGCTATTGTTTCTGTTTCCTGTGTGTGCATTTTACTTTACCATTAATAGTCAAGGCT
TCCTGTGTGTGCATTTTACTTTTCTGTTTCCTGTGTGTGCATTTTACTTTTCTGGTAGCT
GCACAAGTGACTTAAATACCATCTTTGTCTGGCTTGTGTATTAGTACATCCCATTATCTC
TACTTGTCATCTAAACTTCGGTATCTCGCTGCTGCAGAAGTTGATTAAATATCATCTTTG
CCTGTTTGCCTAGCTCCTCCTTTTGCAATGGGATTATTTGAGCCCGAGTATCTAACTAAC
TTTTCTTCTATACTTGTGTTTTTGTGATGTGTTCTTTTTTGAGTTTCTATAAATACCGTC
ATGCATTTCTTGGTTCCTTAACCACATGCAGTGCCTCTTTGTTTCTATGGATTTTCAATG
TTTTGTTTGAGGATTCTAATCAGTACAAACTTTTCCTACAAGGCCTGTTCGGTTCATAGA
AAACAATATGGATTTTCCTTGGCATTTATTTGCACTGGATTTCACAGGAATTTTTCATCC
ACTCCAATCTGTTGGAAACATTCCTACGTTTTTCCTATGCACAATCAAACATCCATCAAC
CATGTAGTATCCATGACACTCTAATCTCGCGTTTTGGAAATCGTGCAAATCAAGGAGGTT
ATATCGCTTACAATGGCCATGTTTCTTGAACTGTGTTTTGGCCAGTCTTTCTAGCGGAAC
CTGCATATTCTTCTAGTCGGTAGTTTGAGCCTCACAGCCTGTGAGCATCTCTTTGCTGAT
GACCTGCGTAACATTGCTTTCAGCGGAATCGTGGCAGAATCTGGTGGAAAGTCCTCAAAG
CTGGTGGGACAACCGAGTAGACAAGGTGAGCCTCGGAACATTTCGTCATGATTTATTTTT
CCTTCCCTCAGCTGGTCCTAACGATTGTTCTATCTCCTTTGAAATTCAGAGGTCACCTAA
AGCCCCCGACTTCAAGCACAAAGACACCGGCGAGGCTCTATGGTTGAGTCCCAGGACACC
AAGTTGGGTTACAGATGCGCTGCCGCCGGTGAAAGGAGGTAGCAAAGGGGGAGGGGCAGG
TAGAAGGCCGGAGACCCTACTCTCTTGACCTGTCTGAGGTGGCCTACGCTGTGCGATGTG
CGTTGCCTCAGCTCTATTCTTTTGCTAAATATATTCAGGCTGTCTCTGTTCTGCTAACTT
ATGCGAGTCCGGTAGAGACCACGCAAGATTAAAGAAAAAAAAAAATCTCTGCCTTAACCT
CCAGCGCTGTCACTGATGCCCATGTGGGTTGGGCTGGGTTGGGCCTTAGTAATGCTATGC
GAGGATGTAAATAGCATTTCCAAGTCGATGATACCTATGCCGCTTCATACGTCTGTCCCC
CTTGCACTGCTTTGAGTTTCATGGCTGTGCTTTCAGCAAAATTACATGGTAGTAAAGTGG
GCCTTGGGCGTCGCCCGGGAAACTTAAGCGGGCTGTGTGTCATTCGGCCTCACAGATTTT
GACACGGGATAAAGCCCAAACAAGGAAACGAACATGGTATGCCTCGGAGACTTAGTCCGA
TGGAACATAGTAGCACTACTCCGCATATAAGACTTGGTCCGATAGATTATCACCTAGGAG
ATTCAGCAGAAAGATTTGGCTCATTAACAACCCCATTCTGTCTAACGGACGTTACTAGGG
GCCATTTCGTCGAGATGAGGAGCTATATAGGACGATTTTGTTGGCGAGCTTCCAAACAAC
GCCGCAGCAAATGGCTGCTGCCGTGAGCTTCTCCTACCAAATACACATCTTCATGCTCCT
CCTCTGCTACTCCATATGGTCTCTGCACCTGCCTCGTGCTACCCTCTCGATTTCTTTCAG
CCCCGACTTGTCCGATCCCGACTACGACGCCCAAGACTTCTTTTTCCAGGGTGACGCATA
CTACGACACCCAGTCTCACATGATCCAGCTCACGAGAAACGGCGTGGGTCGAGACAACCG
GAACAGCGTAGGGCGGGCGTACCTCGCGACGCCCGTGCCGCTGTGGGACACCGTCACCGG
CGAGCTCGCCCGCTTCACCACCTCCTTCACTTTCCAAATCCCGCCAAGCAATGACACTGG
CGATGGCTTGACGTTCTTCCTTGGGCATTATCCTCCGCCGAGCATTCCCAATGTCAAACG
CGACATGGGCGGCGGGAACCTCGGCCTCTTCAACACAACCGCTGGCACGGTCGCGACCGG
CGACGACCGAGTCGTGGCGGTTGAGTTTGATACGTACTTCAACTTTGGCATCGACCACAG
CGGCAGCCACATGGGCATCGACGTCAATTCCATCGTCTCCCAGGAGTACACCAACGCGGA
CGTGCCTGACAGGAACCTGACGTCTGGCTTCCTGATGAGTTGCGATATCAGCTACGGCAA
CGACACGAAATTACTGGCTGCCGTTCTCCAGATCGGCGACGTGACTTACCGTGTCAACAC
GACTGTTGACCTGAGGCAGGCCTTGCCCAATGTGGTGGCCATCGGCTTCTCAGGTGCCAC
TGGTTTGGCCGTCGAGTTACACCAAATAATGTCATGGTCATTTAACTCCACCTTGGATCC
GCGAGCCGCGCCTGCGCCTGCGCCTGCGCCCGCGCTCGCACCGACGGGCTCCGAGATTTC
GCCGCCTGCACCGACGACCTCCGAGCCCCCGCCGCCGTGGCGGCCTACGCTGAAGAGCCC
CAGGGTTCCGCCGCCTGCGAGGCAGAACCTGTCGAAACTGGCAGTAGAGGTGACTGGACC
GTTTATTGGAGTTATTATTGCAATCGTGTGCGTCTTTGTTGGCGTCCATCAATGGCAGCT
ATACACGAGGAAGAAGCGATGCAGAGCTCTCGCCAGGGGCCTCGGGCACATTGATTACCA
TAAGCTGGCGCGCGCGGCCAACAACTTCGCCGAGGAAACCAGGCTCGGGCAAGGAGGTTC
CGCCTTCGTTTACAGGGGCCAACTGACAAGCCCAAGCAGACCGGTGGCGATAAAGAGATT
CAAACCGGCGGCATCCGGCAGGCAGGCGTTCGAGGACGAGCTCAGGATCGCCAGTCGTCT
CAGGCACCGGAACCTCGTCGAATTGATAGGTTGGTGCTACGACGATAAGAGGAATCCGGT
TGAGTCTCTGTGCCGGTGGCGGGACGACAGGTACACTCGTCTCTTCCTTGTGTATGAGCT
CTTGCCACAAGGTAGCCTCGATCAACACCTACACGGGGGCATCAGTTGGTTACCATGGGA
CAAGAGGTTCGTGTGTAATTCCATCTCTTATTACATCGATGCAACTTGATTTCTTCTTGA
TGTAAAAATGGTGGTTAACACGCTTTGGCAAACAGGCACGGGATCATCCTCGACCTAGGT
TCTGCACTGCAATACCTCCATGTAGATTGCGAGCAACAACAGCAGTGCATCGTGCATGGT
GATATCAAGTCGAGCAACGTGTTGCTCGACCCTTCGTATGGTGCCAAGTTAGGTGACTTC
GGGTTGGCAAGATTTGTTGACCATGAAACCGGGTCGCACACCACAGATGTCTTGCAGGGC
ACTTACGGGTACATTGACCCTGTGTTCATCGACACGAGCCAGCGGAATATGCAGTCGGAC
ATCTACAGTTTCGGCATTGTCCTACTGGAGATGGTCTCTGGAAGGAACCCAACGATGCAT
CTCCATGACGCACCTCCATTGTCGTCATGGGTAAGGAGTTTGTACCACGGCAATATGATC
CTAGAGGCCGCAGATTATAGGCTGATAGGCAGCGAGTCCAGTACTGGGCGACAACAAATG
GAGCGTGTACTGCTTGTAGGGCTCTTGTGTGTGCACCACAACCCGAGCAGCCGGCCGTCC
ATCACCCAAGCCATGGATGCCCTGCGATCCGAGGAACTAAAACTGGACATGAGGCCCCTA
GCGCAGCTGGAACCCTAGTTGCCACAACCTTTAATTGTAGTCCAAAAAATCACAAAGGAA
TGCCATACATGTATTCAAGAGATAAACACTGAGTTGCGATGCGGAGGTGTGCCTCGGTAT
ACTACAGACCGCCATACGTATACCCACATCGTATTGTATACTACATACCGCCATACGTAT
GCAATACGAGATGAGTATACGTATAACGGCCTGTAGTGTCCAAAAGTATACACTGCGAGA
TGGGTATACATTTCCCTTTCTACGTTTTGTGGAGAAGGGGGGGGGGG