Map Locations of contig_41146 (5633 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_41146

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56785 1 820 bp AK253012.1 Available Available None
MLOC_56784 4 1545 bp MLOC_56784.2 Available Available LOC_Os02g38190.1, FRAME:-1, EVALUE:3e-71, 13102.m04200 protein expressed protein





CDS Structure of MLOC_56785






CDS Structure of MLOC_56784






Contig Sequence (5633 bp)

>contig_41146 5633 assembly3_WGSMorex_rbca.fasta
GGTTTGTAGGGGATTATCTTCGAGGGAATCAGAAACCCCGCGATTCCCCGCATGTCCATT
TGGTGGACAGGGTTTGTGGTGAGCAAACCCCTTCAATCCTCTCTAATCCCCCTCGATTTC
TTCCTACCCACATGGCTCAGAAACCTTGTCTCATGGCTCAGGGATTTGACAATTGAGGAG
GATTGGGTGAAAGGAAGGGATTCACCCAATCCTCTAAACCCCCCTCCACAATCCTCCTCG
ACCCCTTCCTGCCAAACAAGGCCTTTCGGTTCCTTTATATTTGAAGCGATTTGGAGGGGA
CTGAGAAGGATTAAATCTCGTACAAGTTAAATTTCACCTAAATCCCCTTCAATCCTCTCC
TGAAAGGGAGGAACCGAACAAGGCCTAAGGAGGCCTGTCTGCTTCCATGCTCTGCCTTCC
AACAAAATCCTCCGGCCAACGCCAAGGAGTGATGGCAATGCTCCATCTAACACGATCTGG
TTCCTATGTTTCCACAATTCACAAAGAACTAGGATCAAGATGGCCATGAAGTCCTTCCGT
AGATCATCGCCGGTGTCCTTGCTCCCGCAACACTCCGTGAAAGTGCTGCCCGTCATTGGC
ACCCAACCATATGCCTCTACCAAGAGCCTGGAAGGGCTTCGTGGGTGTTTAACTTTGTGA
TAATTGTGTTTTGTTGTCCCTGAGGCAAATATCGCAGCTCACCAAACTGCTAAACAATTT
GTTGGTGCTGTACCGGAGCGTGCCTGGAGTTCCCGGGTTCTTACCACGGCTGGTAAACGA
ATGAAACTCTACATTCACACCCAAAAAAGCGAAAAGGAGAAGATTGCGCAGAACTATTAT
CATCCACCAACAGCCCAAATCAAGAATCAGAGTTGGAGGAACTACCAAATGAAGGTGACC
AACAGCCCAAATCAAGAATCAGAGTTGGAGGAACTACCAAATGAAGGTGGATTCAAACAA
TCTGGACTGCAACAGGCAGGTAGAGAACAAAGTAGACAGGCCATGTAAGTATTATTAAGC
TCAGGACTTACAGAAGGAAGATCAGCCGTGGTAAGAAGCAGGGAACTCCAGGCACGCTCA
ATGATACCAGAAGCAGTTCACCTCCTGGAATCAATCAAGCCACCAGATGATAACAGCGGC
AGTTCACCATCTGAAACTAAGCAAGCCAGACACCGACGGACGCTTAAACAATTGTGTGCA
ACTTGGTTCTTGTTTTGGAAAATCTGCTGACAAACCCAAACAGTACTACATATTTTCATC
ATACATCATATGGAACTAATTGTAAGCGTTTGGTTTTTGATGGGTCATATAACATACTAG
CTCACAGCAATCGAAAAGCAGTAGAAAATTGGCGTAAAGATAGGCGGCGACTCAGTTCTC
CAGGCCAGGCACCTGCATGCGGCGGGCGGCCTCAGACTTCTTGCCGCCGAAGATTTCGTC
GGAGACGACCCTGAGCTGACCACGGTGCTTGGACTTGGCGATCTTCTGGATCGTCTTGGG
GTTGGTCACCTTCTGCAGCTTTGAGCCGGTGCGCAGCACGTTCTCCTTCTTGCGCTTCTC
CCGCTCCTCCTTCTTCTTGCGCTTGGCGACCTTGTTCTGCCGGATCTCGTCCTTGAGCTC
CGCCACGCGCACCTGGTACGCCTTCTTCAGGGACTTGTCCCTCACGCGCTGCTCCAGAGG
GACAGGCTTCCGCGACACCATCAGAGCGGAGGAGCGGCGCGTGCGTGGCTCCTTCCATGT
CCGCCCCGAGACGCGCCCGGCGATGACGCCGTCGTAGGTGGGCTGCCCGAAGGCCGCCGG
CTTGGACGGGTCGGACTGGGAGGGCACCGCACGGAGCTTGGACGGCCGGGGGGCGTCGGC
GTCGAGGTCCATGGAATCGGCGGCATCTGCCTCCTCCTCCCGGCGCTTGCGCTTTCCGCG
CTCGCCGCCGAGGCCCTCGTCGAGGTAGCGGAAGTCGAGGTGCGAGGCCATGGGGGGAGA
CTGGGAACTAGCTAGGGTTTCGCCGCCTTTGGGGCTGGGAGAGAGAGGAAGAGGGACTGG
AGGCGGAAGGGGTGGGTTTTTGTTAGGGTTTGAGCGACGGCTGGCGGAGGCAGGTTGGAT
GGGCCAGAGTTGGCGTAAATTTGGACAGGCCCATTTCGAAAAATAAGTTCTTTTTTTTTT
GTAAAATCACGCGCCTCGTAAATAAAATAGTGCATGAAAAGTTGTCACTCTCCCATCAAT
TATTGTAGTGACTTTTAATAAGACAAAACATGTTTCTCATGTAAATTTGCAATAGTATGG
TCTTAAATATAAAATCTTTTAGAGATTACATTATAAACTACACACAAAGTAAAATGAATA
AATGTACACTCTAAAATATGTCTATGTACATCTGTATCTAGTCCGCAATGAAATCTTTAG
GTACATCATAAAGCAGAATCCGTTTGTATGTGGACTTCAATCTCTCACCGTCCGGCCTTT
ATATGTGTGCGCCACATTTTCTGATGACCAATTAACAACATAAAATATGCGTCTCGCTGC
ATGTGGGACTCCCACCACGATCCCACCCACCACTGCTTATGGGCATTTGTGGACAGTCCA
CTAGAAATTAGATGGTTAAGTGGGTTCAAGTGGAATCCCACATAAAAAGTCGTGTATAGA
GCTCACCAGAAATTAGATGGATTAAGCGCTCAGAAGGATCGAAGGAGTAGGACCTAGGGC
GGGGGCCGTTGAGCGCTTCGGTGAGGCCCTCGTAGGGCGTCTCCTGAACAGTCATGGAGC
AAAGGTCGAGGGACGCGGCGTCGGCCTCGGTGAGGAAGAGGAGGCGTTGCTTGATGAAGG
CGAGCGACGTGGAGGAGCCGATGGCGGTGTCGTAGAGCGTACGAGGGCAAGGGTGTCGTT
AAGGGCGCAGATGAGGAGCCGCGAGGAGGCCGCGGCGAGGGTGAGCCAGTCGTCGTCGTG
CGGGGACGACTCGGTGAGCTGGTGCGCCGCGATGGAGCCATCGGCGTGGCCCGCAAAGAG
CAGACAGTCGACGCGGCGCGAGGAGAGGTACGCGAGCAGGGCAGTGACCCGGGAGCCGGC
AGAGTCCTCGTCGGGGGCACGTCGAGCTCGAGCAGCGTGTCGCCGGCGGCGGATAAGACG
TACACGCAGCCCAGGACAGTGTGCGCACGTTGTGCAAGTCAACATGGACAACGGCAGTCA
GGCATGTACTCCCTCCATTTTAAATATAAGACCTTTTAAAGATTTCACTATAGACTAGAT
ACGGAGCAAAATGAATGAATTTACATTTTAAAATATGACTACATATATCCGTATGTAGTT
TATAGTGAAATCTCTAAAAGGTCTTATATTTAGAAAAATGTCTTAAATTTAAGGACGGAG
GGAGTAGTTGTCATGCTGCTTGTGTCAGCTGCACGCCCGGGTTTGTAGGATGGCATAGAC
ATGTGCAGCCATGAGCCCTTGACTAGCTAGCTGTCCCTTTCTTTTCATCGGTGTTGAAAC
AGAAGTAGATTTTCATCGGTGTTGTTGGCTAGCTTAATAGGACGAGATGAGCTTTTAATG
GATTAAATGTGATAACCTGATTAATTTTGTCTTTGTTCAATGGGATACCACTAAAGCAAT
ATAAATAGATGGGCTAAGTTAATCCCACTTAAACCCAACCCCACCCGCAACCTGAGAAAT
ACGTGAACCCCTTATAAGCACGAACAAATGGAGTGCAGTACTACTATTGGTAAAATCAAC
ATGCAAAGATTAGACGAGTCACATCGGAGCATCAATCCGGTTGCTGAGAGGGTGCTTGGA
TCCAAGAGACTAAAATTAGTCTCTTTAAGAGGCTAAAGTTCCAAACATCCCTAACTAAAG
AGAGGCTAAAACTAATCTTAAGACTAAAATCTTTCAGTCAGGAGTACCCCTATTAAAATA
TGCATTAGTCCTCTCTCTCCTCATTTAACTCCTCATGCAAGTTCTGGATTGAAAGGTTTG
GAAGATAATAAATGCTCATTAACTTGATTTTAGTCTCTTTAGTACTTGAATCCAAGCATG
GATGAGGCTAGCAAGTTTTAGTCCCACTACTTTTAGTCATGGGACTAAAACGTATCAAGC
ACCCAAGTTATCTGGTCGATCTTAATTCACGAAACATATAACTCAAATGCACAAATCCAC
GCATCAGCTCTGGATGTAAAAGAGGATCGTTTCTTTATAATTCCGAACTTATTTCCAGTT
ATAACTTGGCAAGTTTCTGGTGAGTTGCTCAAATTATTCTGAAGCAAACCAGATAGAACA
CGCCGGAAGATTTACAGTGATTCGCTGAACAAAAAGACAATCTAACACTACAATCAATGA
AAATCATTCAGGACTAGCAGACTAGTCCGAGGGGCACAAAAAACTAGTCTCAAAAAGCAC
GCAATTGGCGGCTAATCGAGTTTAGCGATCACTGCATCCGTGACTTCCTGGGTGGTGCTG
GTGCCGCCCAAATCCCTAGTCCTGTATTTGCCTTCTGCAATGACACCCTTCACGGCTGAT
TCCAGCCGGTCGGCAAATGACGGGAACTGCAAATGCCTCAGCATCATGGCAGACGAGAGA
AACAGAGCAACGGGGTTAGCTTTCTTCTGTTGCAGAATCTTATCATTTCCAACATTTCCG
GCAGAAGCACCCTGCTCAAAGACCGCATGGTCCTGACCAACATTGCCTGAAATAATGCGG
TGCACAAAGATTTAGACTCTAATTTTCCATCCCCATATGCTCACAAGTTGGGTCTTTATG
CATGGTGCTAAGAGGTTCAAACATGGAAAGGTTAAATAAATGTATAAAATGTAACATAGA
GCAGGCACTATATTACACAGAAACAATCAATTTATACCAATTCTAAACCTATTTGAGCAA
AAACAAAAGAATCACAAGCAGAATCAAACTCTACCTCCAGGCATGACACCAGTGCCCCCA
GCAATACCTGCAGCCACATTGGACACCAGGTTGCCATAAAGATTTGGGGTGACCTATAAA
GGGAAGAAAACAAAAGTCAGTTAACAGGTAATTTCCGAAATTGATTTGTAAACTTTGGGA
CCATCAAGCCAACCTTTAGAATGTAAAACAGCGCATACAAAGAAATACAAAATTGCCAAC
AGAAGGTACAAACATAAGAGATGCTGCTATCACATTTGTAAAAACTTAGCTAAACGATCC
TCACTAATATTTTCTGTATAGGATCAATATAAGTCTATATCAAACAGCATGCTGCTCAAG
GTTAAAAAAAATAACTTACTATAGAACCATGAGAACATATCAGCTCGATGAACAATTAGA
ATATAGTTGCAATACAGTGACATTTAGTGAGAACTGCATAGATTCATAAACATACCATAA
CATCAAACTGTTCAGGTTTTGCAACAAGCTGCATACAGCAGTTGTCCACAATGATTTCAT
TATATTGAATTCCAGGATACTTCGTCGCAACCTCACGGCAGGACTCCAGGAACAAACCAT
CAGCTAGCTTCATGATGTTTGCTTTATGCACTGCCGTCACTTTCTTTCTATTGTTGAGGT
AAGCATACTCAAAGGCGTATTTGGCAATCCTTTCAGAGCAGAACTTCGTCATCACCTGCC
AAATCCATTCAGTGAGTTTAACATGGAGGGGGGGGGGGGAATCCTTCAGACAA